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Aliases for RN7SKP20 Gene

Subcategory (RNA class) for RN7SKP20 Gene

7SK RNA

Aliases for RN7SKP20 Gene

  • RNA, 7SK Small Nuclear Pseudogene 20 2 3 5

External Ids for RN7SKP20 Gene

ORGUL Members for RN7SKP20 Gene

Summaries for RN7SKP20 Gene

GeneCards Summary for RN7SKP20 Gene

RN7SKP20 (RNA, 7SK Small Nuclear Pseudogene 20) is a Pseudogene, and is affiliated with the 7SK RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP20 Gene

Genomics for RN7SKP20 Gene

Regulatory Elements for RN7SKP20 Gene

Enhancers for RN7SKP20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF013597 0.6 ENCODE 0.8 +2.0 1953 0.5 ZNF316 MAFF MAFG EMSY MAFK RN7SKP20 TCEANC
GH0XF013647 1.7 FANTOM5 Ensembl ENCODE 0.2 +51.7 51684 1.8 PKNOX1 ATF1 ARNT CREB3L1 ELK1 GATA2 FOS JUNB NCOA1 TSHZ1 TCEANC RAB9A RN7SKP20
GH0XF013649 0.8 ENCODE 0.2 +53.9 53915 1.8 ATF1 FEZF1 ZIC2 GLIS2 ZNF766 SCRT2 PRDM10 FOSL2 KLF8 ZNF639 TCEANC RAB9A RN7SKP20
GH0XF013650 0.7 ENCODE 0.2 +50.1 50072 0.0 ZNF263 CTCF ZNF654 RNF2 ZNF175 TRIM22 REST RAD21 ZNF324 ZFP69B RAB9A TCEANC RN7SKP20
GH0XF013646 0.7 ENCODE 0.2 +50.0 49981 0.2 ZNF263 CTCF ZNF654 RNF2 ZNF175 TRIM22 REST RAD21 ZNF324 ZFP69B RAB9A TCEANC RN7SKP20
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP20 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP20 Gene

Chromosome:
X
Start:
13,596,236 bp from pter
End:
13,596,548 bp from pter
Size:
313 bases
Orientation:
Plus strand

Genomic View for RN7SKP20 Gene

Genes around RN7SKP20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP20 Gene

Proteins for RN7SKP20 Gene

Post-translational modifications for RN7SKP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP20 Gene

Domains & Families for RN7SKP20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP20 Gene

Function for RN7SKP20 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP20 Gene

Localization for RN7SKP20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP20 Gene

Pathways & Interactions for RN7SKP20 Gene

SuperPathways for RN7SKP20 Gene

No Data Available

Interacting Proteins for RN7SKP20 Gene

Gene Ontology (GO) - Biological Process for RN7SKP20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP20 Gene

Transcripts for RN7SKP20 Gene

mRNA/cDNA for RN7SKP20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP20 Gene

No ASD Table

Relevant External Links for RN7SKP20 Gene

GeneLoc Exon Structure for
RN7SKP20
ECgene alternative splicing isoforms for
RN7SKP20

Expression for RN7SKP20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SKP20 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP20 Gene:

RN7SKP20
genes like me logo Genes that share expression patterns with RN7SKP20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SKP20 Gene

Orthologs for RN7SKP20 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP20 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22453 35
  • 56 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 7SK 35
  • 67 (a)
OneToOne
Species where no ortholog for RN7SKP20 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP20 Gene

ENSEMBL:
Gene Tree for RN7SKP20 (if available)
TreeFam:
Gene Tree for RN7SKP20 (if available)

Paralogs for RN7SKP20 Gene

No data available for Paralogs for RN7SKP20 Gene

Variants for RN7SKP20 Gene

Relevant External Links for RN7SKP20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP20 Gene

Disorders for RN7SKP20 Gene

No disorders were found for RN7SKP20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP20 Gene

Publications for RN7SKP20 Gene

No publications were found for RN7SKP20 Gene.

Products for RN7SKP20 Gene

Sources for RN7SKP20 Gene

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