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Aliases for RN7SKP180 Gene

Subcategory (RNA class) for RN7SKP180 Gene

7SK RNA

Aliases for RN7SKP180 Gene

  • RNA, 7SK Small Nuclear Pseudogene 180 2 3 5

External Ids for RN7SKP180 Gene

ORGUL Members for RN7SKP180 Gene

Previous GeneCards Identifiers for RN7SKP180 Gene

  • GC17M070661

Summaries for RN7SKP180 Gene

GeneCards Summary for RN7SKP180 Gene

RN7SKP180 (RNA, 7SK Small Nuclear Pseudogene 180) is a Pseudogene, and is affiliated with the 7SK RNA class.

Additional gene information for RN7SKP180 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP180 Gene

Genomics for RN7SKP180 Gene

Regulatory Elements for RN7SKP180 Gene

Enhancers for RN7SKP180 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H072680 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.1 -19114 5 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 SLC30A9 ZNF143 FOS SP5 REST C17orf80 GC17M072664 RN7SKP180 GC17P072715
GH17H072660 1 ENCODE 0.7 +2.6 2620 1 FOXA2 MLX ARID4B DMAP1 SLC30A9 FOS ATF7 SP5 ZHX2 NFYC RN7SKP180 GC17M072664 LOC105371887
GH17H072666 0.7 ENCODE 0.7 -2.5 -2545 0 SOX13 MLX ARID4B RARA TEAD3 GATAD2A NFIA SP5 MIER2 HMG20A RN7SKP180 GC17M072664 GC17P072715
GH17H072702 1.1 ENCODE dbSUPER 0.3 -38.4 -38385 0 ELF3 FOXA2 RAD21 RARA ZSCAN5C SCRT2 FOS MIER3 CEBPA RCOR2 GC17P072715 RN7SKP180 GC17M072664
GH17H072678 0.8 ENCODE dbSUPER 0.4 -14.3 -14320 0 ZNF146 PRDM6 GLIS1 ZNF140 RN7SKP180 GC17M072664 GC17P072715
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP180 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP180 Gene

Chromosome:
17
Start:
72,663,823 bp from pter
End:
72,664,152 bp from pter
Size:
330 bases
Orientation:
Minus strand

Genomic View for RN7SKP180 Gene

Genes around RN7SKP180 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP180 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP180 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP180 Gene

Proteins for RN7SKP180 Gene

Post-translational modifications for RN7SKP180 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP180 Gene

Domains & Families for RN7SKP180 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP180 Gene

Function for RN7SKP180 Gene

Phenotypes From GWAS Catalog for RN7SKP180 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP180 Gene

Localization for RN7SKP180 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP180 Gene

Pathways & Interactions for RN7SKP180 Gene

SuperPathways for RN7SKP180 Gene

No Data Available

Interacting Proteins for RN7SKP180 Gene

Gene Ontology (GO) - Biological Process for RN7SKP180 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP180 Gene

Drugs & Compounds for RN7SKP180 Gene

No Compound Related Data Available

Transcripts for RN7SKP180 Gene

mRNA/cDNA for RN7SKP180 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP180 Gene

No ASD Table

Relevant External Links for RN7SKP180 Gene

GeneLoc Exon Structure for
RN7SKP180
ECgene alternative splicing isoforms for
RN7SKP180

Expression for RN7SKP180 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP180 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP180 Gene:

RN7SKP180
genes like me logo Genes that share expression patterns with RN7SKP180: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP180 Gene

Orthologs for RN7SKP180 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP180 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 34
  • 91 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 7SK 34 34
  • 83 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 7SK 34
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26035 34
  • 75 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 7SK 34
  • 64 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 7SK 34
  • 76 (a)
OneToMany
Species where no ortholog for RN7SKP180 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP180 Gene

ENSEMBL:
Gene Tree for RN7SKP180 (if available)
TreeFam:
Gene Tree for RN7SKP180 (if available)

Paralogs for RN7SKP180 Gene

No data available for Paralogs for RN7SKP180 Gene

Variants for RN7SKP180 Gene

Relevant External Links for RN7SKP180 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP180

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP180 Gene

Disorders for RN7SKP180 Gene

No disorders were found for RN7SKP180 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP180 Gene

Publications for RN7SKP180 Gene

No publications were found for RN7SKP180 Gene.

Products for RN7SKP180 Gene

Sources for RN7SKP180 Gene

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