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Aliases for RN7SKP173 Gene

Subcategory (RNA class) for RN7SKP173 Gene

7SK RNA

Aliases for RN7SKP173 Gene

  • RNA, 7SK Small Nuclear Pseudogene 173 2 3 5

External Ids for RN7SKP173 Gene

ORGUL Members for RN7SKP173 Gene

Previous GeneCards Identifiers for RN7SKP173 Gene

  • GC20P037392

Summaries for RN7SKP173 Gene

GeneCards Summary for RN7SKP173 Gene

RN7SKP173 (RNA, 7SK Small Nuclear Pseudogene 173) is a Pseudogene, and is affiliated with the 7SK RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP173 Gene

Genomics for RN7SKP173 Gene

Regulatory Elements for RN7SKP173 Gene

Enhancers for RN7SKP173 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G038139 2.1 FANTOM5 Ensembl ENCODE dbSUPER 21.3 -605.5 -605538 33.6 CREB3L1 MLX AGO1 ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SNHG17 ACTR5 TTI1 RN7SKP173 SNORA71A SNORA71C RPRD1B MANBAL TGM2 RPS3P2
GH20G038891 1.5 Ensembl ENCODE dbSUPER 13.4 +131.6 131648 3.0 PKNOX1 WRNIP1 ARID4B ELK1 ZNF143 ZNF202 SP3 JUNB REST TBX21 FAM83D TTI1 ACTR5 SNHG17 RN7SKP173 SNORA71A SNORA71C RPRD1B GC20M038907 RN7SL116P
GH20G038839 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +81.4 81376 6.2 TBL1XR1 YBX1 TCF12 ZNF121 ZNF766 EGR1 CBX5 ZNF143 RELB ZNF548 ACTR5 SNHG17 SNORA71C RN7SKP173 RPRD1B PPP1R16B SNORA71A RALGAPB DHX35 RN7SL116P
GH20G038897 1.2 dbSUPER 13.4 +138.5 138544 5.8 FOXA2 PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 FAM83D SNORA71A TTI1 ACTR5 SNHG17 RN7SKP173 SNORA71C RPRD1B DHX35 SNORA71B
GH20G038356 0.9 ENCODE 17.7 -405.0 -405027 0.2 HDGF ATF1 CBX3 ARNT ZSCAN4 ZNF2 RAD21 CHAMP1 EGR1 ZNF143 SNHG17 RN7SKP173 SNORA71C ENSG00000206249 ENSG00000224635 SNORA71B SNORA71A ACTR5 SNORA60 BPI
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP173 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP173 Gene

Chromosome:
20
Start:
38,761,528 bp from pter
End:
38,761,842 bp from pter
Size:
315 bases
Orientation:
Plus strand

Genomic View for RN7SKP173 Gene

Genes around RN7SKP173 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP173 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP173 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP173 Gene

Proteins for RN7SKP173 Gene

Post-translational modifications for RN7SKP173 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP173 Gene

Domains & Families for RN7SKP173 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP173 Gene

Function for RN7SKP173 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP173 Gene

Localization for RN7SKP173 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP173 Gene

Pathways & Interactions for RN7SKP173 Gene

SuperPathways for RN7SKP173 Gene

No Data Available

Interacting Proteins for RN7SKP173 Gene

Gene Ontology (GO) - Biological Process for RN7SKP173 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP173 Gene

Drugs & Compounds for RN7SKP173 Gene

No Compound Related Data Available

Transcripts for RN7SKP173 Gene

mRNA/cDNA for RN7SKP173 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP173 Gene

No ASD Table

Relevant External Links for RN7SKP173 Gene

GeneLoc Exon Structure for
RN7SKP173
ECgene alternative splicing isoforms for
RN7SKP173

Expression for RN7SKP173 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP173 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP173 Gene:

RN7SKP173
genes like me logo Genes that share expression patterns with RN7SKP173: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP173 Gene

Orthologs for RN7SKP173 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RN7SKP173 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 7SK 35
  • 59 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25505 35
  • 59 (a)
OneToOne
Species where no ortholog for RN7SKP173 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP173 Gene

ENSEMBL:
Gene Tree for RN7SKP173 (if available)
TreeFam:
Gene Tree for RN7SKP173 (if available)

Paralogs for RN7SKP173 Gene

No data available for Paralogs for RN7SKP173 Gene

Variants for RN7SKP173 Gene

Relevant External Links for RN7SKP173 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP173

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP173 Gene

Disorders for RN7SKP173 Gene

No disorders were found for RN7SKP173 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP173 Gene

Publications for RN7SKP173 Gene

No publications were found for RN7SKP173 Gene.

Products for RN7SKP173 Gene

Sources for RN7SKP173 Gene

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