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Aliases for RN7SKP150 Gene

Subcategory (RNA class) for RN7SKP150 Gene

7SK RNA

Aliases for RN7SKP150 Gene

  • RNA, 7SK Small Nuclear Pseudogene 150 2 3 5

External Ids for RN7SKP150 Gene

ORGUL Members for RN7SKP150 Gene

Previous GeneCards Identifiers for RN7SKP150 Gene

  • GC05P179275

Summaries for RN7SKP150 Gene

GeneCards Summary for RN7SKP150 Gene

RN7SKP150 (RNA, 7SK Small Nuclear Pseudogene 150) is a Pseudogene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for RN7SKP150 Gene

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

Additional gene information for RN7SKP150 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP150 Gene

Genomics for RN7SKP150 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP150 Gene

Promoters and enhancers for RN7SKP150 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I180069 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 27.3 +225.1 225147 3.6 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 POLR2B RNF130 ZFP62 MRNIP HNRNPH1 MAML1 LOC100996419 RN7SKP150 CNOT6 RUFY1 TBC1D9B
GH05I179619 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 18.5 -223.6 -223559 6.1 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 HNRNPH1 MAML1 MRNIP ZNF879 RUFY1 ZFP2 GRM6 ZNF354C LOC100996419 ENSG00000254035
GH05I179023 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 19.2 -822.0 -822031 1.6 ATF1 SIN3A ZNF2 YY1 ETS1 ZNF213 ZNF302 ELK1 ZNF143 ATF7 ZNF879 ZNF354C RN7SKP150 ZNF354B ZNF454 LOC100996419 MRNIP ENSG00000254035 ZFP2 GRM6
GH05I180798 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14.5 +959.7 959738 14.1 ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 SP3 MGAT1 ENSG00000233937 RACK1 GFPT2 RN7SKP150 LOC100996419 ENSG00000250900 TRIM7 ZFP62 ENSG00000280161
GH05I179803 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10 -39.9 -39889 5.9 HDGF FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SP3 SP5 MGAT4B SQSTM1 ZNF879 LOC100996419 ZFP2 ZNF454 GRM6 ENSG00000254035 ZNF354C MRNIP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SKP150 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP150 Gene

Genomic Locations for RN7SKP150 Gene
chr5:179,845,832-179,846,152
(GRCh38/hg38)
Size:
321 bases
Orientation:
Plus strand
chr5:179,272,832-179,273,152
(GRCh37/hg19)

Genomic View for RN7SKP150 Gene

Genes around RN7SKP150 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP150 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP150 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP150 Gene

Proteins for RN7SKP150 Gene

Post-translational modifications for RN7SKP150 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP150 Gene

Domains & Families for RN7SKP150 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP150 Gene

Function for RN7SKP150 Gene

Phenotypes From GWAS Catalog for RN7SKP150 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP150 Gene

Localization for RN7SKP150 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP150 Gene

Pathways & Interactions for RN7SKP150 Gene

SuperPathways for RN7SKP150 Gene

No Data Available

Interacting Proteins for RN7SKP150 Gene

Gene Ontology (GO) - Biological Process for RN7SKP150 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP150 Gene

Drugs & Compounds for RN7SKP150 Gene

No Compound Related Data Available

Transcripts for RN7SKP150 Gene

mRNA/cDNA for RN7SKP150 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP150 Gene

No ASD Table

Relevant External Links for RN7SKP150 Gene

GeneLoc Exon Structure for
RN7SKP150
ECgene alternative splicing isoforms for
RN7SKP150

Expression for RN7SKP150 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP150 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP150 Gene:

RN7SKP150
genes like me logo Genes that share expression patterns with RN7SKP150: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP150 Gene

Orthologs for RN7SKP150 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RN7SKP150 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 34
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 7SK 34
  • 70 (a)
OneToMany
Species where no ortholog for RN7SKP150 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP150 Gene

ENSEMBL:
Gene Tree for RN7SKP150 (if available)
TreeFam:
Gene Tree for RN7SKP150 (if available)

Paralogs for RN7SKP150 Gene

No data available for Paralogs for RN7SKP150 Gene

Variants for RN7SKP150 Gene

Additional Variant Information for RN7SKP150 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP150

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP150 Gene

Disorders for RN7SKP150 Gene

No disorders were found for RN7SKP150 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP150 Gene

Publications for RN7SKP150 Gene

No publications were found for RN7SKP150 Gene.

Products for RN7SKP150 Gene

Sources for RN7SKP150 Gene

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