Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RN7SKP150 Gene

Subcategory (RNA class) for RN7SKP150 Gene

7SK RNA

Aliases for RN7SKP150 Gene

  • RNA, 7SK Small Nuclear Pseudogene 150 2 3 5

External Ids for RN7SKP150 Gene

ORGUL Members for RN7SKP150 Gene

Previous GeneCards Identifiers for RN7SKP150 Gene

  • GC05P179275

Summaries for RN7SKP150 Gene

GeneCards Summary for RN7SKP150 Gene

RN7SKP150 (RNA, 7SK Small Nuclear Pseudogene 150) is a Pseudogene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for RN7SKP150 Gene

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP150 Gene

Genomics for RN7SKP150 Gene

Regulatory Elements for RN7SKP150 Gene

Enhancers for RN7SKP150 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F180798 0.5 ENCODE 22.6 +959.7 959739 14.1 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 ZNF610 LOC100996419 ENSG00000233937 RACK1 RN7SKP150 ZFP62 GFPT2 TRIM52 ENSG00000250900 TRIM7 CNOT6
GH05F179803 0.4 ENCODE 10.5 -39.9 -39880 5.9 HDGF ARID4B SIN3A DMAP1 ZNF48 ZNF2 YY1 ZNF121 GLIS2 KLF7 ZNF879 LOC100996419 ZFP2 ZNF454 LOC100130798 ZNF354C RN7SKP150 CNOT6 LOC100422593 MGAT4B
GH05F180784 1.2 Ensembl ENCODE 10.5 +941.1 941055 5.8 PLRG1 RAD21 RFX5 CHAMP1 ZNF335 ZNF143 ZNF207 EGR2 ZNF263 ZNF654 ZFP62 MGAT1 LOC100996419 OR2V2 OR2Y1 ENSG00000250900 CNOT6 TBC1D9B RN7SKP150 TRIM7
GH05F180669 0.5 Ensembl 10.5 +824.3 824265 1.7 HDGF PKNOX1 ZNF133 ARID4B YBX1 ZNF2 GATA2 ZNF143 ZNF207 KLF7 ZFP62 ENSG00000233937 MAML1 TRIM52 LOC100996419 CNOT6 GFPT2 TBC1D9B RN7SKP150 RACK1
GH05F179758 0.8 Ensembl ENCODE 10.4 -83.0 -83031 8.4 HDGF PKNOX1 MLX ARID4B DMAP1 ZNF2 ZNF143 FOS ZNF263 SP5 MAML1 CANX MGAT4B ZNF879 LOC100996419 ZNF354C LTC4S MIR1229 SQSTM1 ZFP2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RN7SKP150 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP150 Gene

Chromosome:
5
Start:
179,845,832 bp from pter
End:
179,846,152 bp from pter
Size:
321 bases
Orientation:
Plus strand

Genomic View for RN7SKP150 Gene

Genes around RN7SKP150 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP150 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP150 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP150 Gene

Proteins for RN7SKP150 Gene

Post-translational modifications for RN7SKP150 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP150 Gene

Domains & Families for RN7SKP150 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP150 Gene

Function for RN7SKP150 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP150 Gene

Localization for RN7SKP150 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP150 Gene

Pathways & Interactions for RN7SKP150 Gene

SuperPathways for RN7SKP150 Gene

No Data Available

Interacting Proteins for RN7SKP150 Gene

Gene Ontology (GO) - Biological Process for RN7SKP150 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP150 Gene

Transcripts for RN7SKP150 Gene

mRNA/cDNA for RN7SKP150 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP150 Gene

No ASD Table

Relevant External Links for RN7SKP150 Gene

GeneLoc Exon Structure for
RN7SKP150
ECgene alternative splicing isoforms for
RN7SKP150

Expression for RN7SKP150 Gene

mRNA expression in normal human tissues for RN7SKP150 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP150 Gene:

RN7SKP150
genes like me logo Genes that share expression patterns with RN7SKP150: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SKP150 Gene

Orthologs for RN7SKP150 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RN7SKP150 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 7SK 35
  • 70 (a)
OneToMany
Species where no ortholog for RN7SKP150 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP150 Gene

ENSEMBL:
Gene Tree for RN7SKP150 (if available)
TreeFam:
Gene Tree for RN7SKP150 (if available)

Paralogs for RN7SKP150 Gene

No data available for Paralogs for RN7SKP150 Gene

Variants for RN7SKP150 Gene

Relevant External Links for RN7SKP150 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP150

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP150 Gene

Disorders for RN7SKP150 Gene

No disorders were found for RN7SKP150 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP150 Gene

Publications for RN7SKP150 Gene

No publications were found for RN7SKP150 Gene.

Products for RN7SKP150 Gene

Sources for RN7SKP150 Gene

Content
Loading form....