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Aliases for RN7SKP146 Gene

Subcategory (RNA class) for RN7SKP146 Gene

7SK RNA

Aliases for RN7SKP146 Gene

  • RNA, 7SK Small Nuclear Pseudogene 146 2 3 5

External Ids for RN7SKP146 Gene

ORGUL Members for RN7SKP146 Gene

Summaries for RN7SKP146 Gene

GeneCards Summary for RN7SKP146 Gene

RN7SKP146 (RNA, 7SK Small Nuclear Pseudogene 146) is a Pseudogene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for RN7SKP146 Gene

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP146 Gene

Genomics for RN7SKP146 Gene

Regulatory Elements for RN7SKP146 Gene

Enhancers for RN7SKP146 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F000656 0.6 ENCODE 16.3 -71.1 -71082 3.6 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 RN7SKP146 LINC01925 ENSG00000265671 LOC105371953 SLC25A3P3 LOC105371950 IL9RP4 ENSG00000266602 ENSG00000263396 ENOSF1
GH18F000498 0.2 ENCODE 16.3 +87.2 87194 2.0 PKNOX1 DMAP1 FEZF1 GLI4 ZNF2 GLIS2 KLF7 ZNF263 TSHZ1 ZNF488 LINC01925 RN7SKP146 ENSG00000265671 LOC105371950 IL9RP4 LOC105371953 ENSG00000263396 SLC25A3P3 CETN1 COLEC12
GH18F000392 1.2 FANTOM5 Ensembl ENCODE 16.2 +191.9 191942 4.8 PKNOX1 SIN3A FEZF1 ZNF2 GLIS2 FOS SP3 TSHZ1 REST ZNF488 THOC1 LINC01925 RN7SKP146 IL9RP4 LOC105371950 ENSG00000265671 LOC105371953 SLC25A3P3 ENSG00000263396 COLEC12
GH18F000576 0.5 ENCODE 4.9 +8.5 8455 3.5 ESRRA RFX1 CREB3L1 NRF1 CEBPB REST ZNF366 RFX3 ZSCAN29 COLEC12 CLUL1 RN7SKP146 CETN1 GC18P000534
GH18F000596 0.5 ENCODE 0.4 -10.0 -10019 1.4 HDGF ATF1 PKNOX1 ARID4B ZNF48 ZNF121 GLIS2 CBX5 ZNF143 SP3 CLUL1 ROCK1P1 RN7SKP146
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RN7SKP146 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP146 Gene

Chromosome:
18
Start:
586,517 bp from pter
End:
586,850 bp from pter
Size:
334 bases
Orientation:
Minus strand

Genomic View for RN7SKP146 Gene

Genes around RN7SKP146 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP146 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP146 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP146 Gene

Proteins for RN7SKP146 Gene

Post-translational modifications for RN7SKP146 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP146 Gene

Domains & Families for RN7SKP146 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP146 Gene

Function for RN7SKP146 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP146 Gene

Localization for RN7SKP146 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP146 Gene

Pathways & Interactions for RN7SKP146 Gene

SuperPathways for RN7SKP146 Gene

No Data Available

Interacting Proteins for RN7SKP146 Gene

Gene Ontology (GO) - Biological Process for RN7SKP146 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP146 Gene

Transcripts for RN7SKP146 Gene

mRNA/cDNA for RN7SKP146 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP146 Gene

No ASD Table

Relevant External Links for RN7SKP146 Gene

GeneLoc Exon Structure for
RN7SKP146
ECgene alternative splicing isoforms for
RN7SKP146

Expression for RN7SKP146 Gene

mRNA expression in normal human tissues for RN7SKP146 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP146 Gene:

RN7SKP146
genes like me logo Genes that share expression patterns with RN7SKP146: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SKP146 Gene

Orthologs for RN7SKP146 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SKP146 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 98 (a)
OneToOne
Species where no ortholog for RN7SKP146 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP146 Gene

ENSEMBL:
Gene Tree for RN7SKP146 (if available)
TreeFam:
Gene Tree for RN7SKP146 (if available)

Paralogs for RN7SKP146 Gene

No data available for Paralogs for RN7SKP146 Gene

Variants for RN7SKP146 Gene

Relevant External Links for RN7SKP146 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP146

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP146 Gene

Disorders for RN7SKP146 Gene

No disorders were found for RN7SKP146 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP146 Gene

Publications for RN7SKP146 Gene

No publications were found for RN7SKP146 Gene.

Products for RN7SKP146 Gene

Sources for RN7SKP146 Gene

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