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Aliases for RN7SKP127 Gene

Subcategory (RNA class) for RN7SKP127 Gene

lncRNA

Aliases for RN7SKP127 Gene

  • RNA, 7SK Small Nuclear Pseudogene 127 2 3 5

External Ids for RN7SKP127 Gene

ORGUL Members for RN7SKP127 Gene

Summaries for RN7SKP127 Gene

GeneCards Summary for RN7SKP127 Gene

RN7SKP127 (RNA, 7SK Small Nuclear Pseudogene 127) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP127 Gene

Genomics for RN7SKP127 Gene

Regulatory Elements for RN7SKP127 Gene

Enhancers for RN7SKP127 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F029736 1 Ensembl ENCODE 11.2 -7.4 -7427 6.5 YBX1 RAD21 ZNF121 ZNF366 FOS MIXL1 ZNF202 ZNF280D NFYC CEBPB ENSG00000261766 ENSG00000260853 MIR4517 ZNF764 NPIPB13 SMG1P2 ZNF689 ZNF747 CD2BP2 NPIPB10P
GH16F029742 1.1 FANTOM5 ENCODE 11.1 -13.7 -13729 5.4 HDGF YY1 ZNF121 CBX5 ELK1 ZNF207 JUNB REST TBX21 PPARG RN7SKP127 C16orf54 TBX6 YPEL3 MYLPF CORO1A PPP4C ENSG00000260719
GH16F029729 0.6 Ensembl 10.8 +2.1 2104 0.6 CTCF TFAP4 ZNF76 ZNF384 YBX1 RAD21 ZNF7 TEAD3 ZNF121 SLC30A9 ZNF764 ZNF689 CDIPT RN7SKP127 ZNF768 ENSG00000261766 GC16M029709
GH16F029720 0.8 Ensembl ENCODE 10 +10.0 10004 1.2 ATF1 ZNF133 ARID4B THRB ZNF2 RAD21 RARA RFX5 CHAMP1 ZNF766 RN7SKP127 GC16M029709
GH16F029693 0.5 ENCODE 9.5 +36.7 36745 1.5 ZBTB33 NR2F6 RN7SKP127 GC16P029695 QPRT
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RN7SKP127 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP127 Gene

Chromosome:
16
Start:
29,731,051 bp from pter
End:
29,731,404 bp from pter
Size:
354 bases
Orientation:
Minus strand

Genomic View for RN7SKP127 Gene

Genes around RN7SKP127 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP127 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP127 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP127 Gene

Proteins for RN7SKP127 Gene

Post-translational modifications for RN7SKP127 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP127 Gene

Domains & Families for RN7SKP127 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP127 Gene

Function for RN7SKP127 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP127 Gene

Localization for RN7SKP127 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP127 Gene

Pathways & Interactions for RN7SKP127 Gene

SuperPathways for RN7SKP127 Gene

No Data Available

Interacting Proteins for RN7SKP127 Gene

Gene Ontology (GO) - Biological Process for RN7SKP127 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP127 Gene

Transcripts for RN7SKP127 Gene

mRNA/cDNA for RN7SKP127 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP127 Gene

No ASD Table

Relevant External Links for RN7SKP127 Gene

GeneLoc Exon Structure for
RN7SKP127
ECgene alternative splicing isoforms for
RN7SKP127

Expression for RN7SKP127 Gene

mRNA expression in normal human tissues for RN7SKP127 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SKP127 Gene

This gene is overexpressed in Colon - Transverse (x30.9), Small Intestine - Terminal Ileum (x9.1), and Whole Blood (x5.4).

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP127 Gene:

RN7SKP127
genes like me logo Genes that share expression patterns with RN7SKP127: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SKP127 Gene

Orthologs for RN7SKP127 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SKP127 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 100 (a)
OneToOne
Species where no ortholog for RN7SKP127 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP127 Gene

ENSEMBL:
Gene Tree for RN7SKP127 (if available)
TreeFam:
Gene Tree for RN7SKP127 (if available)

Paralogs for RN7SKP127 Gene

No data available for Paralogs for RN7SKP127 Gene

Variants for RN7SKP127 Gene

Relevant External Links for RN7SKP127 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP127

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP127 Gene

Disorders for RN7SKP127 Gene

No disorders were found for RN7SKP127 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP127 Gene

Publications for RN7SKP127 Gene

No publications were found for RN7SKP127 Gene.

Products for RN7SKP127 Gene

Sources for RN7SKP127 Gene

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