Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RN7SKP11 Gene

Subcategory (RNA class) for RN7SKP11 Gene

lncRNA

Aliases for RN7SKP11 Gene

  • RNA, 7SK Small Nuclear Pseudogene 11 2 3 5

External Ids for RN7SKP11 Gene

ORGUL Members for RN7SKP11 Gene

Previous GeneCards Identifiers for RN7SKP11 Gene

  • GC12M096822

Summaries for RN7SKP11 Gene

GeneCards Summary for RN7SKP11 Gene

RN7SKP11 (RNA, 7SK Small Nuclear Pseudogene 11) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP11 Gene

Genomics for RN7SKP11 Gene

Regulatory Elements for RN7SKP11 Gene

Enhancers for RN7SKP11 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F096419 1.7 FANTOM5 Ensembl ENCODE 0.8 +1.6 1607 12.6 PKNOX1 ZFP64 ZNF493 SIN3A BRCA1 GTF3C2 ZNF121 KLF7 ZNF548 FOS ELK3 NEDD1 CDK17 CFAP54 METAP2 SNRPF USP44 RN7SKP11 GC12P096416
GH12F096433 1.3 FANTOM5 Ensembl ENCODE 0.4 -6.6 -6615 2.2 USF1 BHLHE40 USF2 MAX JUNB RAD51 IKZF1 TCF7 FOS MAFK CFAP54 CDK17 NEDD1 RN7SKP11 ENSG00000258272
GH12F096444 1.5 FANTOM5 Ensembl ENCODE 0.3 -19.3 -19329 4.7 TBP HDAC1 PKNOX1 ATF1 TBL1XR1 RAD21 ZBTB40 BRCA1 RFX5 GATA2 CDK17 CFAP54 NEDD1 RN7SKP11 ENSG00000258272
GH12F096456 1 Ensembl ENCODE 0.3 -29.4 -29372 1.4 JUN CHD4 BMI1 EBF1 EED CREM TCF7L2 MTA2 TRIM22 TBX21 CFAP54 CDK17 RN7SKP11 ENSG00000258272
GH12F096466 0.9 Ensembl ENCODE 0.3 -39.6 -39622 1.1 NFYA JUN EP300 ATF2 JUND GATA3 SCRT2 NFYB ZSCAN29 PRDM1 CFAP54 RNU4-24P ENSG00000258272 RN7SKP11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP11 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP11 Gene

Chromosome:
12
Start:
96,427,200 bp from pter
End:
96,427,486 bp from pter
Size:
287 bases
Orientation:
Minus strand

Genomic View for RN7SKP11 Gene

Genes around RN7SKP11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP11 Gene

Proteins for RN7SKP11 Gene

Post-translational modifications for RN7SKP11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP11 Gene

Domains & Families for RN7SKP11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP11 Gene

Function for RN7SKP11 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP11 Gene

Localization for RN7SKP11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP11 Gene

Pathways & Interactions for RN7SKP11 Gene

SuperPathways for RN7SKP11 Gene

No Data Available

Interacting Proteins for RN7SKP11 Gene

Gene Ontology (GO) - Biological Process for RN7SKP11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP11 Gene

Transcripts for RN7SKP11 Gene

mRNA/cDNA for RN7SKP11 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP11 Gene

No ASD Table

Relevant External Links for RN7SKP11 Gene

GeneLoc Exon Structure for
RN7SKP11
ECgene alternative splicing isoforms for
RN7SKP11

Expression for RN7SKP11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SKP11 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SKP11 Gene

This gene is overexpressed in Brain - Amygdala (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP11 Gene:

RN7SKP11
genes like me logo Genes that share expression patterns with RN7SKP11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SKP11 Gene

Orthologs for RN7SKP11 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP11 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 7SK 35
  • 55 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23094 35
  • 37 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 7SK 35
  • 35 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 7SK 35
  • 36 (a)
ManyToMany
Species where no ortholog for RN7SKP11 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP11 Gene

ENSEMBL:
Gene Tree for RN7SKP11 (if available)
TreeFam:
Gene Tree for RN7SKP11 (if available)

Paralogs for RN7SKP11 Gene

No data available for Paralogs for RN7SKP11 Gene

Variants for RN7SKP11 Gene

Relevant External Links for RN7SKP11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP11 Gene

Disorders for RN7SKP11 Gene

No disorders were found for RN7SKP11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP11 Gene

Publications for RN7SKP11 Gene

No publications were found for RN7SKP11 Gene.

Products for RN7SKP11 Gene

Sources for RN7SKP11 Gene

Content
Loading form....