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Aliases for RN7SKP10 Gene

Subcategory (RNA class) for RN7SKP10 Gene

7SK RNA

Aliases for RN7SKP10 Gene

  • RNA, 7SK Small Nuclear Pseudogene 10 2 3

External Ids for RN7SKP10 Gene

Summaries for RN7SKP10 Gene

GeneCards Summary for RN7SKP10 Gene

RN7SKP10 (RNA, 7SK Small Nuclear Pseudogene 10) is a Pseudogene, and belongs to 7SK RNA RNA class.

fRNAdb sequence ontologies for RN7SKP10 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP10 Gene

Genomics for RN7SKP10 Gene

Genomic Location for RN7SKP10 Gene

Start:
109,915,096 bp from pter
End:
109,915,420 bp from pter
Size:
325 bases
Orientation:
Plus strand

Genomic View for RN7SKP10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RN7SKP10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP10 Gene

ORGUL Member Location for RN7SKP10 Gene

ORGUL Member Location for RN7SKP10 gene

No data available for Regulatory Elements for RN7SKP10 Gene

Proteins for RN7SKP10 Gene

Post-translational modifications for RN7SKP10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP10 Gene

Domains for RN7SKP10 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RN7SKP10 Gene

Function for RN7SKP10 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RN7SKP10 Gene

Localization for RN7SKP10 Gene

No data available for Gene Ontology (GO) - Cellular Components for RN7SKP10 Gene

Pathways for RN7SKP10 Gene

SuperPathways for RN7SKP10 Gene

No Data Available

Interacting Proteins for RN7SKP10 Gene

Gene Ontology (GO) - Biological Process for RN7SKP10 Gene

None

No data available for Pathways by source for RN7SKP10 Gene

Transcripts for RN7SKP10 Gene

mRNA/cDNA for RN7SKP10 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP10 Gene

No ASD Table

Relevant External Links for RN7SKP10 Gene

GeneLoc Exon Structure for
RN7SKP10
ECgene alternative splicing isoforms for
RN7SKP10

Expression for RN7SKP10 Gene

mRNA expression in normal human tissues for RN7SKP10 Gene

genes like me logo Genes that share expressions with RN7SKP10: view

Orthologs for RN7SKP10 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RN7SKP10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 37
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22275 37
  • 65 (a)
OneToMany
Species with no ortholog for RN7SKP10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP10 Gene

ENSEMBL:
Gene Tree for RN7SKP10 (if available)
TreeFam:
Gene Tree for RN7SKP10 (if available)

Paralogs for RN7SKP10 Gene

No data available for Paralogs for RN7SKP10 Gene

Variants for RN7SKP10 Gene

Relevant External Links for RN7SKP10 Gene

HapMap Linkage Disequilibrium report
RN7SKP10

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RN7SKP10 Gene

Disorders for RN7SKP10 Gene

No disorders were found for RN7SKP10 Gene.

No data available for UniProtKB/Swiss-Prot for RN7SKP10 Gene

Publications for RN7SKP10 Gene

No publications were found for RN7SKP10 Gene.

Products for RN7SKP10 Gene

Sources for RN7SKP10 Gene

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