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Aliases for RMST Gene

Subcategory (RNA class) for RMST Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RMST Gene

  • Rhabdomyosarcoma 2 Associated Transcript (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 54 2 3
  • Rhabdomyosarcoma 2 Associated Transcript (Non-Coding RNA) 3
  • Non-Coding RNA In Rhabdomyosarcoma (RMS) 3
  • Non-Protein Coding RNA 54 2
  • NCRNA00054 3
  • LINC00054 3
  • NCRMS 3

External Ids for RMST Gene

Previous GeneCards Identifiers for RMST Gene

  • GC12P096362
  • GC12U900573
  • GC12P097858

Summaries for RMST Gene

GeneCards Summary for RMST Gene

RMST (Rhabdomyosarcoma 2 Associated Transcript (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with RMST include rhabdomyosarcoma.

Gene Wiki entry for RMST Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RMST Gene

Genomics for RMST Gene

Regulatory Elements for RMST Gene

Genomic Location for RMST Gene

Chromosome:
12
Start:
97,431,653 bp from pter
End:
97,565,035 bp from pter
Size:
133,383 bases
Orientation:
Plus strand

Genomic View for RMST Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RMST Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RMST Gene

Proteins for RMST Gene

Post-translational modifications for RMST Gene

No Post-translational modifications

No data available for DME Specific Peptides for RMST Gene

Domains & Families for RMST Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RMST Gene

Function for RMST Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RMST Gene

Localization for RMST Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RMST Gene

Pathways & Interactions for RMST Gene

SuperPathways for RMST Gene

No Data Available

Interacting Proteins for RMST Gene

Gene Ontology (GO) - Biological Process for RMST Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RMST Gene

Drugs & Compounds for RMST Gene

No Compound Related Data Available

Transcripts for RMST Gene

Unigene Clusters for RMST Gene

Rhabdomyosarcoma 2 associated transcript (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RMST Gene

No ASD Table

Relevant External Links for RMST Gene

GeneLoc Exon Structure for
RMST
ECgene alternative splicing isoforms for
RMST

Expression for RMST Gene

mRNA expression in normal human tissues for RMST Gene

mRNA differential expression in normal tissues according to GTEx for RMST Gene

This gene is overexpressed in Thyroid (x24.7) and Pituitary (x8.2).

SOURCE GeneReport for Unigene cluster for RMST Gene Hs.652568

genes like me logo Genes that share expression patterns with RMST: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RMST Gene

Orthologs for RMST Gene

Evolution for RMST Gene

ENSEMBL:
Gene Tree for RMST (if available)
TreeFam:
Gene Tree for RMST (if available)

No data available for Orthologs for RMST Gene

Paralogs for RMST Gene

No data available for Paralogs for RMST Gene

Variants for RMST Gene

Sequence variations from dbSNP and Humsavar for RMST Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs714892 -- 97,470,079(+) CCACT(G/T)CCTTC intron-variant
rs721155 -- 97,470,410(+) ttcat(A/G)catgt intron-variant
rs721156 -- 97,470,365(+) AAGAG(C/T)ctcca intron-variant
rs1013843 -- 97,504,573(-) ACACA(C/T)GTAGA intron-variant
rs1013844 -- 97,504,092(-) catag(C/T)gaaaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RMST Gene

Variant ID Type Subtype PubMed ID
nsv7234 OTHER Inversion 18451855
nsv832495 CNV Gain 17160897
nsv840 CNV Insertion 18451855
nsv438229 CNV Loss 16468122
esv2665672 CNV Deletion 23128226

Relevant External Links for RMST Gene

HapMap Linkage Disequilibrium report
RMST

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RMST Gene

Disorders for RMST Gene

MalaCards: The human disease database

(1) MalaCards diseases for RMST Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
rhabdomyosarcoma
- elite association
Search RMST in MalaCards View complete list of genes associated with diseases

Relevant External Links for RMST

Genetic Association Database (GAD)
RMST
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RMST
genes like me logo Genes that share disorders with RMST: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RMST Gene

Publications for RMST Gene

  1. Rmst is a novel marker for the mouse ventral mesencephalic floor plate and the anterior dorsal midline cells. (PMID: 20062813) Uhde C.W. … Li M. (PLoS ONE 2010) 2 67
  2. Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes. (PMID: 12082533) Chan A.S. … Zielenska M. (Oncogene 2002) 2 67
  3. Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity. (PMID: 23563609) Wheeler E. … Farooqi I.S. (Nat. Genet. 2013) 67
  4. The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis. (PMID: 23932716) Ng S.Y. … Stanton L.W. (Mol. Cell 2013) 67
  5. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D. … Mitchell G.F. (BMC Med. Genet. 2007) 67

Products for RMST Gene

Sources for RMST Gene

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