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Aliases for RMST Gene

Subcategory (RNA class) for RMST Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for RMST Gene

  • Rhabdomyosarcoma 2 Associated Transcript (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 54 2 3
  • NCRNA00054 3 6
  • NCRMS 3 6
  • Rhabdomyosarcoma 2 Associated Transcript (Non-Coding RNA) 3
  • Non-Coding RNA In Rhabdomyosarcoma (RMS) 3
  • Non-Protein Coding RNA 54 2
  • LINC00054 3

External Ids for RMST Gene

Previous GeneCards Identifiers for RMST Gene

  • GC12P096362
  • GC12U900573
  • GC12P097858

Summaries for RMST Gene

GeneCards Summary for RMST Gene

RMST (Rhabdomyosarcoma 2 Associated Transcript (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

Gene Wiki entry for RMST Gene

fRNAdb sequence ontologies for RMST Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary and piRNA Summary for RMST Gene

Genomics for RMST Gene

Regulatory Elements for RMST Gene

Genomic Location for RMST Gene

Start:
97,431,653 bp from pter
End:
97,565,035 bp from pter
Size:
133,383 bases
Orientation:
Plus strand

Genomic View for RMST Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RMST Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RMST Gene

Proteins for RMST Gene

Post-translational modifications for RMST Gene

No Post-translational modifications

No data available for DME Specific Peptides for RMST Gene

Domains for RMST Gene

Gene Families for RMST Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RMST: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RMST Gene

Function for RMST Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RMST Gene

Localization for RMST Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RMST Gene

Pathways for RMST Gene

SuperPathways for RMST Gene

No Data Available

Interacting Proteins for RMST Gene

Gene Ontology (GO) - Biological Process for RMST Gene

None

No data available for Pathways by source for RMST Gene

Transcripts for RMST Gene

Unigene Clusters for RMST Gene

Rhabdomyosarcoma 2 associated transcript (non-protein coding):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RMST

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RMST Gene

No ASD Table

Relevant External Links for RMST Gene

GeneLoc Exon Structure for
RMST
ECgene alternative splicing isoforms for
RMST

Expression for RMST Gene

mRNA expression in normal human tissues for RMST Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RMST Gene

This gene is overexpressed in Thyroid (24.7) and Pituitary (8.2).

SOURCE GeneReport for Unigene cluster for RMST Gene Hs.652568

genes like me logo Genes that share expressions with RMST: view

In Situ Assay Products

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for RMST Gene

Orthologs for RMST Gene

Evolution for RMST Gene

ENSEMBL:
Gene Tree for RMST (if available)
TreeFam:
Gene Tree for RMST (if available)

No data available for Orthologs for RMST Gene

Paralogs for RMST Gene

No data available for Paralogs for RMST Gene

Variants for RMST Gene

Sequence variations from dbSNP and Humsavar for RMST Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs714892 -- 97,470,079(+) CCACT(G/T)CCTTC intron-variant
rs721155 -- 97,470,410(+) ttcat(A/G)catgt intron-variant
rs721156 -- 97,470,365(+) AAGAG(C/T)ctcca intron-variant
rs1013843 -- 97,504,573(-) ACACA(C/T)GTAGA intron-variant
rs1013844 -- 97,504,092(-) catag(C/T)gaaaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RMST Gene

Variant ID Type Subtype PubMed ID
nsv7234 OTHER Inversion 18451855
nsv832495 CNV Gain 17160897
nsv840 CNV Insertion 18451855
nsv438229 CNV Loss 16468122
esv2665672 CNV Deletion 23128226

Relevant External Links for RMST Gene

HapMap Linkage Disequilibrium report
RMST

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RMST Gene

Disorders for RMST Gene

Relevant External Links for RMST

Genetic Association Database (GAD)
RMST
genes like me logo Genes that share disorders with RMST: view

No data available for UniProtKB/Swiss-Prot for RMST Gene

Publications for RMST Gene

  1. Rmst is a novel marker for the mouse ventral mesencephalic floor plate and the anterior dorsal midline cells. (PMID: 20062813) Uhde C.W. … Li M. (PLoS ONE 2010) 2 3
  2. Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes. (PMID: 12082533) Chan A.S. … Zielenska M. (Oncogene 2002) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity. (PMID: 23563609) Wheeler E. … Farooqi I.S. (Nat. Genet. 2013) 3
  5. The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis. (PMID: 23932716) Ng S.Y. … Stanton L.W. (Mol. Cell 2013) 3

Products for RMST Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RMST
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RMST
    • Block miRNA regulation of RMST using miScript Target Protectors

    Sources for RMST Gene

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