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Aliases for RLIMP3 Gene

Subcategory (RNA class) for RLIMP3 Gene

lncRNA

Aliases for RLIMP3 Gene

  • Ring Finger Protein, LIM Domain Interacting Pseudogene 3 2 3
  • CTD-2647E9.1 5

External Ids for RLIMP3 Gene

ORGUL Members for RLIMP3 Gene

Previous GeneCards Identifiers for RLIMP3 Gene

  • GC15P050087

Summaries for RLIMP3 Gene

GeneCards Summary for RLIMP3 Gene

RLIMP3 (Ring Finger Protein, LIM Domain Interacting Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RLIMP3 Gene

Genomics for RLIMP3 Gene

Regulatory Elements for RLIMP3 Gene

Enhancers for RLIMP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G049815 1.4 FANTOM5 Ensembl ENCODE 0.3 +22.0 21973 1.3 CTCF ETV1 BACH1 MAX ZNF766 EED ETV6 RELB CREM IKZF2 LOC102724587 FGF7 RLIMP3
GH15G049831 1.2 Ensembl ENCODE dbSUPER 0.3 +37.8 37777 1.7 CTCF MAZ SREBF2 MAX REST EP300 RAD21 GATA3 SCRT2 SMC3 DTWD1 FAM227B LOC102724587 FGF7 RLIMP3
GH15G049846 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +53.5 53533 3.1 TBP CTCF MXI1 JUN MAX BMI1 BRCA1 RAD21 GATA3 SMC3 DTWD1 FAM227B FGF7 ATP8B4 LOC102724587 RLIMP3
GH15G049854 1.4 Ensembl ENCODE dbSUPER 0.2 +62.1 62133 2.8 TBP RB1 NFRKB BRCA1 ZBTB40 RAD21 RFX5 SMARCC2 ZNF143 RCOR1 DTWD1 FGF7 ATP8B4 LOC102724587 RLIMP3
GH15G049812 0.5 ENCODE 0.4 +19.6 19563 1.8 NBN MNT CEBPG ATF2 LOC102724587 DTWD1 FGF7 RLIMP3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RLIMP3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RLIMP3 Gene

Chromosome:
15
Start:
49,794,244 bp from pter
End:
49,796,097 bp from pter
Size:
1,854 bases
Orientation:
Plus strand

Genomic View for RLIMP3 Gene

Genes around RLIMP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RLIMP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RLIMP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RLIMP3 Gene

Proteins for RLIMP3 Gene

Post-translational modifications for RLIMP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RLIMP3 Gene

Domains & Families for RLIMP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RLIMP3 Gene

Function for RLIMP3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RLIMP3 Gene

Localization for RLIMP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RLIMP3 Gene

Pathways & Interactions for RLIMP3 Gene

SuperPathways for RLIMP3 Gene

No Data Available

Interacting Proteins for RLIMP3 Gene

Gene Ontology (GO) - Biological Process for RLIMP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RLIMP3 Gene

Drugs & Compounds for RLIMP3 Gene

No Compound Related Data Available

Transcripts for RLIMP3 Gene

mRNA/cDNA for RLIMP3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RLIMP3 Gene

No ASD Table

Relevant External Links for RLIMP3 Gene

GeneLoc Exon Structure for
RLIMP3
ECgene alternative splicing isoforms for
RLIMP3

Expression for RLIMP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RLIMP3 Gene

mRNA differential expression in normal tissues according to GTEx for RLIMP3 Gene

This gene is overexpressed in Testis (x13.9).

NURSA nuclear receptor signaling pathways regulating expression of RLIMP3 Gene:

RLIMP3
genes like me logo Genes that share expression patterns with RLIMP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RLIMP3 Gene

Orthologs for RLIMP3 Gene

Evolution for RLIMP3 Gene

ENSEMBL:
Gene Tree for RLIMP3 (if available)
TreeFam:
Gene Tree for RLIMP3 (if available)

No data available for Orthologs for RLIMP3 Gene

Paralogs for RLIMP3 Gene

No data available for Paralogs for RLIMP3 Gene

Variants for RLIMP3 Gene

Relevant External Links for RLIMP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RLIMP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RLIMP3 Gene

Disorders for RLIMP3 Gene

No disorders were found for RLIMP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RLIMP3 Gene

Publications for RLIMP3 Gene

No publications were found for RLIMP3 Gene.

Products for RLIMP3 Gene

Sources for RLIMP3 Gene

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