RLF Gene
protein-coding GIFtS : 53
GCID: GC01 P040627
rearranged L-myc fusion (Previous name: rearranged L-myc fusion sequence )
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Aliasesfor RLF gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Rearranged L-Myc Fusion 1 2 Zn-15L1 ZNF292L1 2 ZN-15L2 Rearranged L-Myc Fusion Sequence1 2 Zinc Finger Protein Rlf2 Rearranged L-Myc Fusion Gene Protein2 3 Zn-15 Related2 Zn-15-Related Protein2 3
Export aliases for RLF gene to outside databases Previous GC identifers: GC01P040661 GC01P039630 GC01P040090 GC01P040040 GC01P040296 GC01P040399 GC01P038745
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Summariesfor RLF gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: RLF_HUMAN, Q13129 Function : May be involved in transcriptional regulationGene Wiki entry for RLF
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Genomic Viewsfor RLF gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_032977.9 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the RLF gene promoter: AhR ATF-2 NCX/Ncx XBP-1 Arnt CREB RORalpha1 CRE-BP1 COMP1 ATF6 Other transcription factors Search SABiosciences Chromatin IP Primers for RLF Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat RLF
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p32 Ensembl cytogenetic band: 1p34.2 HGNC cytogenetic band: 1p32 RLF Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P040627: view genomic region
(about GC identifiers )
Start:
40,627,041 bp from pter
End:
40,706,593 bp from pter
Size:
79,553 bases
Orientation:
plus strand
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Proteinsfor RLF gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: RLF_HUMAN, Q13129 (See
protein sequence )Recommended Name: Zinc finger protein Rlf Size : 1914 amino acids; 217953 Da
Subunit : Interacts with RIT1 and RIT2 (By similarity)
Subcellular location : Nucleus (Probable)
Miscellaneous : In some small cell lung carcinoma (SCLC) cell lines, there is an intrachromosomal rearrangements at 1p32fusing the first exon of the RLF gene with L-myc
Secondary accessions : Q14CQ1 Q9NU60Explore the universe of human proteins at neXtProt for RLF: NX_Q13129 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q13129 RLF Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_036553.2 ENSEMBL proteins: ENSP00000361857 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
RLF for ontologies About GeneDecksing RLF Antibody Products: Assay Products for RLF:
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Protein
Domains / Familiesfor RLF gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
RLF for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q13129 ProtoNet protein and cluster: Q13129
1 Blocks protein family : IPB007086 C2H2-type zinc finger signature UniProtKB/Swiss-Prot: RLF_HUMAN, Q13129 Similarity : Belongs to the krueppel C2H2-type zinc-finger protein familySimilarity : Contains 14 C2H2-type zinc fingers
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Functionfor RLF gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: RLF_HUMAN, Q13129 Function : May be involved in transcriptional regulation
Genatlas biochemistry entry for RLF : rearranged l-myc fusion gene,in small cell lung carcinoma Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RLF (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RLFOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: RLF (NM_004491 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RLF Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RLF
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RLF
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
RLF for ontologies About GeneDecksing 3 GenomeRNAi human phenotypes for RLF :
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Pathways & Interactionsfor RLF gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RLF STRING Interaction
Network Preview (showing 5 interactants - click image to see 9)5/14 Interacting proteins for RLF (Q13129 1 , 2 , 3 ENSP00000361857 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 14 )About this table Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7 ): About this table
RLF for ontologies About GeneDecksing
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Drugs & Compoundsfor RLF gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for RLF Search CenterWatch for drugs/clinical trials and news about RLF
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Transcriptsfor RLF gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for RLF gene: NM_012421.3 Unigene Cluster for RLF:
Rearranged L-myc fusion Hs.205627 [show with all ESTs ] Unigene Representative Sequence: NM_012421 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000372771 (uc001cfc.4 uc001cfd.4 ) ENST00000487606 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RLF (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RLFOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: RLF (NM_004491 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RLF Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RLF
Additional cDNA sequence: AK307662.1 BC113666.1 BX537979.1 U22377.1 X58480.1
9 DOTS entries : DT.214756 DT.97800159
DT.95363715 DT.121437600 DT.121437615 DT.121437621 DT.121437628 DT.95262154 DT.100754512 24/118 AceView cDNA sequences (see all 118 ):
CB163941 AW102775 F12163 BM698782 AW274998 BM669568 BM542854 BM712271 BP339286 F11598 AI803292 AW383138 AW196684 AI826273 BU678115 BM806992 BX956701 CB126178 AU130403 BX105264 AW383178 AI765591 AW572667 AA173500 GeneLoc Exon Structure
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Expression for RLF gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section RLF expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ATTGTATATG
About this image RLF expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Reproductive System Early Gonad Testis Somatic Cells Testis Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See RLF Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for RLF SOURCE GeneReport for Unigene cluster: Hs.205627 UniProtKB/Swiss-Prot: RLF_HUMAN, Q13129 Tissue specificity : Widely expressed in fetal and adult tissues SABiosciences Custom PCR Arrays for RLF Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RLFBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat RLF QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RLF QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RLF In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RLF
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Orthologsfor RLF gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for RLF gene from 4/12 species (see all 12 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
RLF6
Uncharacterized protein
63(a)
1 ↔ 1
23(1704306-1733624)
lizard (Anolis carolinensis)
Reptilia
RLF6
--
58(a)
1 ↔ 1
GL343276.1(1767463-1785593)
African clawed frog (Xenopus laevis)
Amphibia
Xl.305672
Xenopus laevis transcribed sequence with moderate similarity more
74.78(n)
 
48046441
zebrafish (Danio rerio)
Actinopterygii
rlf1
rearranged L-myc fusion
48.69(n) 38.88(a)
 
562452 XM_685832.5 XP_690924.5
ENSEMBL Gene Tree for RLF (if available)TreeFam Gene Tree for RLF (if available)
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Paralogsfor RLF gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for RLF gene ZNF654 2 ZNF292 2 ENSG00000229729 2 1 SIMAP similar gene for RLF using alignment to 1 protein entry: RLF_HUMAN :ZNF808
RLF for paralogs About GeneDecksing 2 Pseudogenes.org Pseudogenes for RLF PGOHUM00000245666 PGOHUM00000235409
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Genomic Variantsfor RLF gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for RLF (40627041 - 40706593 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for RLF 2 CNVs : 4219 3289
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RLF
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Disorders
/ Diseasesfor RLF gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
RLF for disorders About GeneDecksing
OMIM gene information: 180610
OMIM disorders : --5 diseases for RLF : About MalaCards retinopathy of prematurity cryptorchidism lung carcinoma lung cancer carcinoma 2 Novoseek disease relationships for RLF gene About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
cancer lung
39.9
3
1312699 (2), 1649386 (1)
tumors
0
2
1312699 (2)
Export disorders for RLF gene to outside databases
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Publicationsfor RLF gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for RLF gene, integrated from 9 sources (see all 20 ): (articles sorted by number of sources associating them with RLF) Utopia : connect your pdf to the dynamic world of online information
The rearranged L-myc fusion gene (RLF) encodes a Zn-15 related zinc finger protein. (PubMed id 8545128) 1 , 2 , 9 Makela T.P.... Alitalo K. (1995) Intrachromosomal rearrangements fusing L-myc and rlf in small-cell lung cancer. (PubMed id 1649386) 1 , 3, 9 Makela T.P....Alitalo K. (1991) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 1 , 2 Gregory S.G.... Bentley D.R. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 1 , 2 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692) 2 Rigbolt K.T....Blagoev B. (2011) System-wide changes to SUMO modifications in response to heat shock. (PubMed id 19471022) 1 Golebiowski F....Hay R.T. (2009) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008) A yeast 2-hybrid analysis of human GTP cyclohydrolase I protein interactions. (PubMed id 16696853) 1 Swick L. and Kapatos G. (2006)
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External Searches for RLF gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RLF gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RLF gene
(According to HUGE )
About This Section --
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Specialized Databases showing RLF gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for RLF gene: Search GeneIP for patents involving RLF GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RLF gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for RLF OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for RLF OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RLF Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for RLF OriGene 3'-UTR Clone for RLF OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RLF OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RLF Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for RLF OriGene Custom Protein Services for RLF OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RLF QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RLF QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat RLF QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat RLF QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RLF QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RLF
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RLF Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RLF
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RLF
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Aliases for RLF
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Drugs / Compounds for RLF
Expression for RLF
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