RIMS4 Gene
protein-coding GIFtS: 46
GCID: GC20M043380
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|
regulating synaptic membrane exocytosis 4(Previous name: chromosome 20 open reading frame 190 )
(Previous symbol: C20orf190)
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Aliases
for RIMS4 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Regulating Synaptic Membrane Exocytosis 41 2 | | DJ781B1.31 | | C20orf1901 2 3 | | RIM-42 | | Rab3-Interacting Molecule 42 3 | | RIM42 | | RIM 42 3 | | RIM4-Gamma1 | | RIM4 Gamma2 3 | | RIM4gamma2 | | Chromosome 20 Open Reading Frame 1901 | | Regulating Synaptic Membrane Exocytosis Protein 42 |
Export aliases for RIMS4 gene to outside databasesPrevious GC identifers: GC20U900082 GC20M044070 GC20M044065 GC20M042813 GC20M040121 |
Summaries
for RIMS4 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: RIMS4_HUMAN, Q9H426Function: Regulates synaptic membrane exocytosis (By similarity)
|
Genomic Views
for RIMS4 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000020.10 NC_018931.1 NT_011362.10
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the RIMS4 gene promoter:
Pax-5 SREBP-1c ATF-2 NRSF form 1 NRSF form 2 SREBP-1b RORalpha1 CRE-BP1 POU2F1 POU2F1a
Other transcription factors
Search SABiosciences Chromatin IP Primers for RIMS4
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RIMS4 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 20q13.12 Ensembl cytogenetic band: 20q13.12 HGNC cytogenetic band: 20q13.12RIMS4 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 20 GeneLoc Exon Structure GeneLoc location for GC20M043380: view genomic region
(about GC identifiers)
Start:
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43,380,449 bp from pter |
End:
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43,438,979 bp from pter |
Size:
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58,531 bases |
Orientation:
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minus strand |
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Proteins
for RIMS4 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: RIMS4_HUMAN, Q9H426 (See
protein sequence)Recommended Name: Regulating synaptic membrane exocytosis protein 4 Size: 269 amino acids; 29329 Da
Subunit: Binds PPFIA3 (By similarity). Does not bind RAB3
Subcellular location: Cell junction, synapse (By similarity)
Secondary accessions: A4FU94 E1P613 Q3MI44 Q5JWT7Alternative splicing: 2 isoforms: Q9H426-1 Q9H426-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for RIMS4: NX_Q9H426
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9H426
RIMS4 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001192246.1 NP_892015.1
ENSEMBL proteins: ENSP00000361942 ENSP00000439287
Human Recombinant Protein Products for RIMS4:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
RIMS4 for ontologies About GeneDecksing
RIMS4 Antibody Products:
Assay Products for RIMS4: |
Protein
Domains /
Families
for RIMS4 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
RIMS4 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9H426ProtoNet protein and cluster: Q9H426 1 Blocks protein family: IPB000008 C2 domain
UniProtKB/Swiss-Prot: RIMS4_HUMAN, Q9H426Similarity: Contains 1 C2 domain |
Function
for RIMS4 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: RIMS4_HUMAN, Q9H426Function: Regulates synaptic membrane exocytosis (By similarity)Phenotypes:
1 GenomeRNAi human phenotype for RIMS4:
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RIMS4 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RIMS4
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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Synthesis Service for RIMS4 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RIMS4 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RIMS4 |
|
Pathways & Interactions
for RIMS4 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RIMS4
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006836 | neurotransmitter transport |
IEA | -- | | GO:0006887 | exocytosis |
IEA | -- |
RIMS4 for ontologies About GeneDecksing
|
Drugs & Compounds
for RIMS4 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for RIMS4
Search CenterWatch for drugs/clinical trials and news about RIMS4
|
Transcripts
for RIMS4 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for RIMS4 gene (2 alternative transcripts): NM_001205317.1 NM_182970.3 Unigene Cluster for RIMS4: Regulating synaptic membrane exocytosis 4 Hs.517065 [show with all ESTs]Unigene Representative Sequence: NM_0012053172 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000372851(uc010ggu.3 uc002xms.3) ENST00000541604
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RIMS4 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RIMS4
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): RIMS4 (NM_182970) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RIMS4 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RIMS4 |
Additional cDNA sequence: AK055698.1 AK095716.1 AK124626.1 AK126807.1 AY326954.1 BC036612.2 BC104190.1 BC104191.1 BC112985.1 BX648947.1 4 DOTS entries: DT.65287302 DT.110291 DT.120810360 DT.120810452 24/92 AceView cDNA sequences (see all 92): AW207186 NM_182970 T33629 AA351616 AI879054 BQ881878 Z39210 AL040526 BU167487 AI218940 AY326954 AW206818 AA833714 BU729025 AK055698 AK124626 BE544700 BE045709 AI050674 AI199767 BI918162 BX389351 AL521195 BQ070672
GeneLoc Exon Structure
|
Expression
for RIMS4 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| RIMS4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTGAAATTAA
About this image
See RIMS4 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RIMS4
SOURCE GeneReport for Unigene cluster: Hs.517065
SABiosciences Custom PCR Arrays for RIMS4
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RIMS4
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat RIMS4 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RIMS4 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RIMS4 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RIMS4 |
Orthologs
for RIMS4 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for RIMS4 gene from 5/19 species (see all 19) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
RIMS41 |
regulating synaptic membrane exocytosis 4 |
81.66(n)
93.31(a) |
|
428142 XM_425700.2 XP_425700.2 |
lizard
(Anolis carolinensis) |
Reptilia |
RIMS46 |
-- |
92(a) |
1 ↔ 1 |
4(143785527-143806772) |
zebrafish
(Danio rerio) |
Actinopterygii |
LOC5709231 |
regulating synaptic membrane exocytosis protein 4-like |
76.12(n)
84.33(a) |
|
570923 XM_694455.4 XP_699547.4 |
fruit fly
(Drosophila melanogaster) |
Insecta |
Rim6 |
Rim |
3(a) |
1 → many |
3R(13698470-13742300) |
worm
(Caenorhabditis elegans) |
Secernentea |
unc-106 |
Rab-3-interacting molecule unc-10 |
6(a) |
1 → many |
X(7272279-7280275) |
ENSEMBL Gene Tree for RIMS4 (if available)
TreeFam Gene Tree for RIMS4 (if available) |
Paralogs
for RIMS4 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for RIMS4 gene
- RIMS12 RIMS32 RIMS22
4 SIMAP similar genes for RIMS4 using alignment to 2 protein entries: RIMS4_HUMAN (see all proteins):RIMS2 RIMS3 RIMS1 CHR11SYT
RIMS4 for paralogs About GeneDecksing
|
Genomic Variants
for RIMS4 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 20 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for RIMS4 (43380449 - 43438979 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for RIMS4: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RIMS4 |
|
Disorders
/ Diseases
for RIMS4 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
RIMS4 for disorders About GeneDecksing
OMIM gene information: 611601
OMIM disorders: --
1  disease for RIMS4: About MalaCardspolydactyly
1 disease from the University of Copenhagen DISEASES database for RIMS4:Polydactyly Human Genome Epidemiology (HuGE) Navigator: RIMS4 (2 documents)
Export disorders for RIMS4 gene to outside databases
|
Publications
for RIMS4 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for RIMS4 gene integrated from 9 sources:
(articles sorted by number of sources associating them with RIMS4) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Genomic definition of RIM proteins: evolutionary amplification of a family of synaptic regulatory proteins. (PubMed id 12620390)1, 2, 3 Wang Y. and Suedhof T.C. (2003)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)1, 2 Deloukas P....Rogers J. (2001)
- A yeast two-hybrid screen reveals that osteopontin ass ociates with MAP1A and MAP1B in addition to other proteins linked to microtubule stability, apoptosis and protein degradation in the human brain. (PubMed id 22779921)1 Long P....Rose S. (2012)
- Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
- Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
- ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. (PubMed id 17525332)2 Matsuoka S.... Elledge S.J. (2007)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for RIMS4 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing RIMS4 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing RIMS4 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RIMS4 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for RIMS4 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for RIMS4 gene:
Search GeneIP for patents involving RIMS4
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for RIMS4 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
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| |
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| | | | Search Tocris compounds for RIMS4 |
| |  |  |  |  | | | | |
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 | | | RIMS4 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RIMS4 |
|  |  |  |  | | | | ThermoFisher Antibodies for RIMS4 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RIMS4 |
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