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Aliases for RIMBP3C Gene

Aliases for RIMBP3C Gene

  • RIMS Binding Protein 3C 2 3 5
  • RIMS-Binding Protein 3.3 3 4
  • RIM-BP3.3 3 4
  • RIM-BP3.C 3 4
  • RIMS Binding Protein 3.3 3
  • RIMBP3.3 3

External Ids for RIMBP3C Gene

Previous GeneCards Identifiers for RIMBP3C Gene

  • GC22M020232
  • GC22M021900

Summaries for RIMBP3C Gene

GeneCards Summary for RIMBP3C Gene

RIMBP3C (RIMS Binding Protein 3C) is a Protein Coding gene. An important paralog of this gene is RIMBP2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RIMBP3C Gene

Genomics for RIMBP3C Gene

Regulatory Elements for RIMBP3C Gene

Promoters for RIMBP3C Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RIMBP3C on UCSC Golden Path with GeneCards custom track

Genomic Location for RIMBP3C Gene

Chromosome:
22
Start:
21,545,357 bp from pter
End:
21,551,461 bp from pter
Size:
6,105 bases
Orientation:
Minus strand

Genomic View for RIMBP3C Gene

Genes around RIMBP3C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RIMBP3C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RIMBP3C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RIMBP3C Gene

Proteins for RIMBP3C Gene

  • Protein details for RIMBP3C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NJZ7-RIM3C_HUMAN
    Recommended name:
    RIMS-binding protein 3C
    Protein Accession:
    A6NJZ7

    Protein attributes for RIMBP3C Gene

    Size:
    1639 amino acids
    Molecular mass:
    180950 Da
    Quaternary structure:
    • Interacts with FASLG.

neXtProt entry for RIMBP3C Gene

Proteomics data for RIMBP3C Gene at MOPED

Post-translational modifications for RIMBP3C Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RIMBP3C Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RIMBP3C Gene

Domains & Families for RIMBP3C Gene

Protein Domains for RIMBP3C Gene

Suggested Antigen Peptide Sequences for RIMBP3C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NJZ7

UniProtKB/Swiss-Prot:

RIM3C_HUMAN :
  • Contains 2 fibronectin type-III domains.
  • Belongs to the RIMBP family.
Domain:
  • Contains 2 fibronectin type-III domains.
  • Contains 3 SH3 domains.
Family:
  • Belongs to the RIMBP family.
genes like me logo Genes that share domains with RIMBP3C: view

No data available for Gene Families for RIMBP3C Gene

Function for RIMBP3C Gene

Phenotypes for RIMBP3C Gene

genes like me logo Genes that share phenotypes with RIMBP3C: view

Animal Models for RIMBP3C Gene

MGI Knock Outs for RIMBP3C:

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for RIMBP3C Gene

Localization for RIMBP3C Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RIMBP3C Gene COMPARTMENTS Subcellular localization image for RIMBP3C gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RIMBP3C Gene

Pathways & Interactions for RIMBP3C Gene

SuperPathways for RIMBP3C Gene

No Data Available

Interacting Proteins for RIMBP3C Gene

Selected Interacting proteins: A6NJZ7-RIM3C_HUMAN for RIMBP3C Gene via I2D

Symbol External ID(s) Details
FASLG

Gene Ontology (GO) - Biological Process for RIMBP3C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RIMBP3C Gene

Drugs & Compounds for RIMBP3C Gene

No Compound Related Data Available

Transcripts for RIMBP3C Gene

mRNA/cDNA for RIMBP3C Gene

(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(29) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RIMBP3C Gene

RIMS binding protein 3C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RIMBP3C Gene

No ASD Table

Relevant External Links for RIMBP3C Gene

GeneLoc Exon Structure for
RIMBP3C
ECgene alternative splicing isoforms for
RIMBP3C

Expression for RIMBP3C Gene

mRNA expression in normal human tissues for RIMBP3C Gene

mRNA expression in normal human tissues for RIMBP3C Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for RIMBP3C Gene Hs.447643

genes like me logo Genes that share expression patterns with RIMBP3C: view

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RIMBP3C Gene

Orthologs for RIMBP3C Gene

This gene was present in the common ancestor of animals.

Orthologs for RIMBP3C Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RIMBP3B 35
  • 75.37 (n)
  • 62.68 (a)
-- 36
  • 58 (a)
OneToMany
dog
(Canis familiaris)
Mammalia LOC486445 35
  • 79.31 (n)
  • 69.18 (a)
mouse
(Mus musculus)
Mammalia Rimbp3 35
  • 73.66 (n)
  • 64.86 (a)
Rimbp3 16
Rimbp3 36
  • 59 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Rimbp3 35
  • 73.95 (n)
  • 65.41 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 37 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 17 (a)
ManyToMany
chicken
(Gallus gallus)
Aves -- 36
  • 26 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 37 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii si:ch211-105f12.2 36
  • 30 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta Rbp 36
  • 13 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea tag-168 36
  • 16 (a)
OneToMany
Species with no ortholog for RIMBP3C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RIMBP3C Gene

ENSEMBL:
Gene Tree for RIMBP3C (if available)
TreeFam:
Gene Tree for RIMBP3C (if available)

Paralogs for RIMBP3C Gene

Paralogs for RIMBP3C Gene

(2) SIMAP similar genes for RIMBP3C Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RIMBP3C: view

Variants for RIMBP3C Gene

Sequence variations from dbSNP and Humsavar for RIMBP3C Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs7926 -- 21,545,903(-) TTAAG(C/T)GTCCC utr-variant-3-prime
rs364215 -- 21,546,879(+) CTGGC(A/G)CCCAG reference, synonymous-codon
rs484252 -- 21,546,328(-) GCTCA(C/T)CATCC reference, missense
rs1610467 -- 21,546,735(+) GGGGT(C/G)AAGAG reference, synonymous-codon
rs618488 -- 21,545,512(-) ctgtg(C/T)gctca downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RIMBP3C Gene

Variant ID Type Subtype PubMed ID
nsv436864 CNV Insertion 17901297
nsv437849 CNV Loss 16327808
esv28075 CNV Gain+Loss 19812545
nsv471490 CNV Duplication 19718026
dgv4874n71 CNV Gain 21882294
nsv914437 CNV Gain 21882294
dgv4875n71 CNV Gain 21882294
nsv914443 CNV Loss 21882294
nsv914444 CNV Gain 21882294
dgv4877n71 CNV Gain 21882294
nsv7350 OTHER Inversion 18451855
nsv428386 CNV Loss 18775914
nsv914448 CNV Loss 21882294
dgv4878n71 CNV Gain 21882294
nsv469545 CNV Gain 16826518
nsv471596 CNV Gain+Loss 15918152
dgv819e199 CNV Deletion 23128226
esv2661723 CNV Deletion 23128226
nsv511071 OTHER Inversion 20534489
nsv442791 CNV CNV 18776908
nsv914458 CNV Loss 21882294
nsv834145 CNV Loss 17160897
nsv914461 CNV Gain 21882294
esv2678291 CNV Deletion 23128226
esv25508 CNV Gain+Loss 19812545
dgv820e199 CNV Deletion 23128226

Variation tolerance for RIMBP3C Gene

Gene Damage Index Score: 0.00; 0.02% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RIMBP3C Gene

HapMap Linkage Disequilibrium report
RIMBP3C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RIMBP3C Gene

Disorders for RIMBP3C Gene

Relevant External Links for RIMBP3C

Genetic Association Database (GAD)
RIMBP3C
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RIMBP3C

No disorders were found for RIMBP3C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RIMBP3C Gene

Publications for RIMBP3C Gene

  1. Identification of SH3 domain interaction partners of human FasL (CD178) by phage display screening. (PMID: 19807924) Voss M. … Janssen O. (BMC Immunol. 2009) 3 4 67
  2. Structure and evolution of RIM-BP genes: identification of a novel family member. (PMID: 17855024) Mittelstaedt T. … Schoch S. (Gene 2007) 2 3
  3. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for RIMBP3C Gene

Sources for RIMBP3C Gene

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