Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RIMBP3B Gene

Aliases for RIMBP3B Gene

  • RIMS Binding Protein 3B 2 3
  • RIMS-Binding Protein 3.2 3 4
  • RIM-BP3.2 3 4
  • RIM-BP3.B 3 4
  • RIMS Binding Protein 3.2 3
  • RIMS-Binding Protein 3B 3
  • RIMBP3.2 3

External Ids for RIMBP3B Gene

Previous GeneCards Identifiers for RIMBP3B Gene

  • GC22P020067
  • GC22P021738
  • GC22P021759
  • GC22P021775
  • GC22P021797

Summaries for RIMBP3B Gene

GeneCards Summary for RIMBP3B Gene

RIMBP3B (RIMS Binding Protein 3B) is a Protein Coding gene. An important paralog of this gene is RIMBP3C.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RIMBP3B Gene

Genomics for RIMBP3B Gene

Regulatory Elements for RIMBP3B Gene

Genomic Location for RIMBP3B Gene

Start:
21,383,374 bp from pter
End:
21,389,478 bp from pter
Size:
6,105 bases
Orientation:
Plus strand

Genomic View for RIMBP3B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RIMBP3B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RIMBP3B Gene

Proteins for RIMBP3B Gene

  • Protein details for RIMBP3B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NNM3-RIM3B_HUMAN
    Recommended name:
    RIMS-binding protein 3B
    Protein Accession:
    A6NNM3
    Secondary Accessions:

    Protein attributes for RIMBP3B Gene

    Size:
    1639 amino acids
    Molecular mass:
    180952 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RIMBP3B Gene

Proteomics data for RIMBP3B Gene at MOPED

Post-translational modifications for RIMBP3B Gene

  • Ubiquitination at Lys1226
  • Modification sites at PhosphoSitePlus

Other Protein References for RIMBP3B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RIMBP3B Gene

Domains for RIMBP3B Gene

Protein Domains for RIMBP3B Gene

Suggested Antigen Peptide Sequences for RIMBP3B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NNM3

UniProtKB/Swiss-Prot:

RIM3B_HUMAN :
  • A6NNM3
Domain:
  • Contains 2 fibronectin type-III domains.
  • Contains 3 SH3 domains.
Family:
  • Belongs to the RIMBP family.
genes like me logo Genes that share domains with RIMBP3B: view

No data available for Gene Families for RIMBP3B Gene

Function for RIMBP3B Gene

Gene Ontology (GO) - Molecular Function for RIMBP3B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with RIMBP3B: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RIMBP3B Gene

Localization for RIMBP3B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RIMBP3B Gene COMPARTMENTS Subcellular localization image for RIMBP3B gene
Compartment Confidence
nucleus 3
cytosol 2
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RIMBP3B Gene

Pathways for RIMBP3B Gene

SuperPathways for RIMBP3B Gene

No Data Available

Interacting Proteins for RIMBP3B Gene

Gene Ontology (GO) - Biological Process for RIMBP3B Gene

None

No data available for Pathways by source for RIMBP3B Gene

Transcripts for RIMBP3B Gene

mRNA/cDNA for RIMBP3B Gene

(37) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RIMBP3B Gene

RIMS binding protein 3B:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RIMBP3B

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RIMBP3B

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RIMBP3B Gene

No ASD Table

Relevant External Links for RIMBP3B Gene

GeneLoc Exon Structure for
RIMBP3B
ECgene alternative splicing isoforms for
RIMBP3B

Expression for RIMBP3B Gene

mRNA expression in normal human tissues for RIMBP3B Gene

mRNA differential expression in normal tissues according to GTEx for RIMBP3B Gene

This gene is overexpressed in Testis (42.8).

SOURCE GeneReport for Unigene cluster for RIMBP3B Gene Hs.568257

genes like me logo Genes that share expressions with RIMBP3B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for RIMBP3B Gene

Orthologs for RIMBP3B Gene

This gene was present in the common ancestor of mammals.

Orthologs for RIMBP3B Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RIMBP3B 35
  • 75.6 (n)
  • 62.82 (a)
dog
(Canis familiaris)
Mammalia LOC486445 35
  • 79.31 (n)
  • 69.18 (a)
mouse
(Mus musculus)
Mammalia Rimbp3 35
  • 73.66 (n)
  • 64.86 (a)
rat
(Rattus norvegicus)
Mammalia Rimbp3 35
  • 73.97 (n)
  • 65.41 (a)
Species with no ortholog for RIMBP3B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RIMBP3B Gene

ENSEMBL:
Gene Tree for RIMBP3B (if available)
TreeFam:
Gene Tree for RIMBP3B (if available)

Paralogs for RIMBP3B Gene

Paralogs for RIMBP3B Gene

Selected SIMAP similar genes for RIMBP3B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RIMBP3B: view

Variants for RIMBP3B Gene

Sequence variations from dbSNP and Humsavar for RIMBP3B Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs468032 -- 21,383,577(+) GCTAG(A/T)AGCAG upstream-variant-2KB
rs468588 -- 21,387,131(+) CTGGA(G/T)GTGCT reference, missense
rs468931 -- 21,388,309(+) GAAAA(A/G)GCAGT missense, reference
rs469598 -- 21,382,657(+) GTCTC(A/G)ATGCA upstream-variant-2KB
rs618444 -- 21,389,289(+) ctccc(G/T)cacca downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RIMBP3B Gene

Variant ID Type Subtype PubMed ID
nsv436864 CNV Insertion 17901297
nsv437849 CNV Loss 16327808
esv28075 CNV Gain+Loss 19812545
nsv471490 CNV Duplication 19718026
dgv4874n71 CNV Gain 21882294
nsv914437 CNV Gain 21882294
dgv4875n71 CNV Gain 21882294
nsv914443 CNV Loss 21882294
nsv914444 CNV Gain 21882294
dgv4877n71 CNV Gain 21882294
nsv7350 OTHER Inversion 18451855
nsv428386 CNV Loss 18775914
nsv914448 CNV Loss 21882294
dgv4878n71 CNV Gain 21882294
nsv469545 CNV Gain 16826518
nsv471596 CNV Gain+Loss 15918152
dgv819e199 CNV Deletion 23128226
esv2661723 CNV Deletion 23128226
nsv511071 OTHER Inversion 20534489
nsv442791 CNV CNV 18776908
nsv914458 CNV Loss 21882294
nsv834145 CNV Loss 17160897
nsv914461 CNV Gain 21882294
esv2678291 CNV Deletion 23128226
esv25508 CNV Gain+Loss 19812545
dgv820e199 CNV Deletion 23128226

Relevant External Links for RIMBP3B Gene

HapMap Linkage Disequilibrium report
RIMBP3B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RIMBP3B Gene

Disorders for RIMBP3B Gene

No disorders were found for RIMBP3B Gene.

No data available for UniProtKB/Swiss-Prot for RIMBP3B Gene

Publications for RIMBP3B Gene

  1. Structure and evolution of RIM-BP genes: identification of a novel family member. (PMID: 17855024) Mittelstaedt T. … Schoch S. (Gene 2007) 2 3
  2. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  3. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 4

Products for RIMBP3B Gene

Sources for RIMBP3B Gene

Back to Top

Content