RILPL1 Gene
protein-coding GIFtS : 46
GCID: GC12 M123955
Rab interacting lysosomal protein-like 1
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Aliasesfor RILPL1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Rab Interacting Lysosomal Protein-Like 1 1 2 Rab-Interacting Lysosomal-Like Protein 12 3 RLP12 3 FLJ393781 GOSPEL2 RILP-Like Protein 12
Export aliases for RILPL1 gene to outside databases Previous GC identifers: GC12M122522 GC12M120917
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Summariesfor RILPL1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: RIPL1_HUMAN, Q5EBL4 Function : Neuroprotective protein, which acts by sequestring GAPDH in the cytosol and prevent the apoptotic function ofGAPDH in the nucleus. Competes with SIAH1 for binding GAPDH (By similarity). Does not regulate lysosomal morphology and distribution
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Genomic Viewsfor RILPL1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000012.11 NC_018923.1 NT_009755.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the RILPL1 gene promoter: Max1 AML1a HTF GCNF AP-4 Evi-1 GCNF-1 GCNF-2 c-Myc Other transcription factors Search SABiosciences Chromatin IP Primers for RILPL1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat RILPL1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 12q24.31 Ensembl cytogenetic band: 12q24.31 HGNC cytogenetic band: 12q24.31 RILPL1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12M123955: view genomic region
(about GC identifiers )
Start:
123,955,909 bp from pter
End:
124,018,265 bp from pter
Size:
62,357 bases
Orientation:
minus strand
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Proteinsfor RILPL1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: RIPL1_HUMAN, Q5EBL4 (See
protein sequence )Recommended Name: RILP-like protein 1 Size : 403 amino acids; 47108 Da
Subunit : Interacts (when S-nitrosylated) with GAPDH (By similarity)
Subcellular location : Cytoplasm, cytosol
Secondary accessions : Q66K36 Q8N1M0Alternative splicing : 3 isoforms : Q5EBL4-1 Q5EBL4-2 Q5EBL4-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for RILPL1: NX_Q5EBL4 Post-translational modifications:
S-nitrosylation is required for the interaction with GAPDH (By similarity)1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q5EBL4 RILPL1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_847884.2 ENSEMBL proteins: ENSP00000366070 ENSP00000345874 ENSP00000442991 Human Recombinant Protein Products: Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view) : About this table
RILPL1 for ontologies About GeneDecksing RILPL1 Antibody Products: Assay Products for RILPL1:
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Protein
Domains / Familiesfor RILPL1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
RILPL1 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q5EBL4 ProtoNet protein and cluster: Q5EBL4
UniProtKB/Swiss-Prot: RIPL1_HUMAN, Q5EBL4 Similarity : Belongs to the RILPL familySimilarity : Contains 1 RILP-like domain
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Functionfor RILPL1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: RIPL1_HUMAN, Q5EBL4 Function : Neuroprotective protein, which acts by sequestring GAPDH in the cytosol and prevent the apoptotic function ofGAPDH in the nucleus. Competes with SIAH1 for binding GAPDH (By similarity). Does not regulate lysosomal morphology and distribution
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RILPL1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RILPL1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: RILPL1 (NM_178314 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RILPL1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RILPL1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RILPL1
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005515 protein binding
-- --
RILPL1 for ontologies About GeneDecksing
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Pathways & Interactionsfor RILPL1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RILPL1 STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)2 Interacting proteins for RILPL1 (Q5EBL4 3 ENSP00000366070 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0043526 neuroprotection
-- -- GO:1901214 regulation of neuron death
ISS --
RILPL1 for ontologies About GeneDecksing
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Drugs & Compoundsfor RILPL1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for RILPL1 Search CenterWatch for drugs/clinical trials and news about RILPL1 / RIPL1
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Transcriptsfor RILPL1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for RILPL1 gene: NM_178314.3 Unigene Cluster for RILPL1:
Rab interacting lysosomal protein-like 1 Hs.530315 [show with all ESTs ] Unigene Representative Sequence: BC041375 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000376874 (uc001ufd.2 uc001ufe.2 uc010tas.1 ) ENST00000340724 ENST00000544468 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RILPL1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RILPL1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: RILPL1 (NM_178314 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RILPL1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RILPL1
Additional cDNA sequence: AK096697.1 AK097550.1 BC041375.1 BC080626.1 BC089444.1
12 DOTS entries : DT.92421480 DT.100776417
DT.97796895 DT.87046251 DT.214214 DT.102828354 DT.121175260 DT.405892 DT.91896440 DT.100744930 DT.100776415 DT.97793965 24/105 AceView cDNA sequences (see all 105 ):
AI734180 BM508077 CA441706 BF437352 AI453241 NM_180703 AA211268 BU682752 AA487864 BC054034 CA307572 BM797196 BM714052 BM717649 BC020829 BU856880 AA301542 NM_180699 BC028485 BM998075 BM694072 BM704623 AW975762 AA487865 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for RILPL1 (see all 6 ) About this scheme ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12a · 12b SP1 :       -   -   -           -           SP2 :       -   -   -           -     -       SP3 :         -   -           -           SP4 :           -                     SP5 :                              
ECgene alternative splicing isoforms for RILPL1
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Expression for RILPL1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section RILPL1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TAGCAATGTT
About this image RILPL1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Eye Lens Eye Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See RILPL1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for RILPL1 SOURCE GeneReport for Unigene cluster: Hs.530315 UniProtKB/Swiss-Prot: RIPL1_HUMAN, Q5EBL4 Tissue specificity : Widely expressed. Expressed at lower level in liver and kidney SABiosciences Custom PCR Arrays for RILPL1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RILPL1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat RILPL1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RILPL1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RILPL1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RILPL1
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Orthologsfor RILPL1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for RILPL1 gene from 7/20 species (see all 20 ) About this table
ENSEMBL Gene Tree for RILPL1 (if available)TreeFam Gene Tree for RILPL1 (if available)
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Paralogsfor RILPL1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for RILPL1 gene RILPL2 2 RILP 2
RILPL1 for paralogs About GeneDecksing
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Genomic Variantsfor RILPL1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 12 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for RILPL1 (123955909 - 124018265 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 3 variations for RILPL1 1 CNV : 5313 2 Indels : 24885 71603
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RILPL1
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Disorders
/ Diseasesfor RILPL1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
RILPL1 for disorders About GeneDecksing
OMIM gene information: 614092
OMIM disorders : --1 disease for RILPL1 : About MalaCards neuronitis Export disorders for RILPL1 gene to outside databases
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Publicationsfor RILPL1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for RILPL1 gene integrated from 9 sources : (articles sorted by number of sources associating them with RILPL1) Utopia : connect your pdf to the dynamic world of online information
A unique region of RILP distinguishes it from its related proteins in its regulation of lysosomal morphology and interaction with Rab7 and Rab34. (PubMed id 14668488) 1 , 2 , 3 Wang T.... Hong W. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008) Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348) 1 Barbe L....Andersson-Svahn H. (2008) The finished DNA sequence of human chromosome 12. (PubMed id 16541075) 2 Scherer S.E.... Gibbs R.A. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for RILPL1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RILPL1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RILPL1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing RILPL1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for RILPL1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for RILPL1 gene: Search GeneIP for patents involving RILPL1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RILPL1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies Browse OriGene shRNA RFPs OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for RILPL1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RILPL1 OriGene Protein Over-expression Lysate for RILPL1 Browse OriGene Fluorogenic Cell Assay Kits Browse OriGene siRNAs OriGene 3'-UTR Clone for RILPL1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RILPL1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RILPL1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for RILPL1 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for RILPL1 OriGene Custom Protein Services for RILPL1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RILPL1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RILPL1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat RILPL1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat RILPL1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RILPL1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RILPL1
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RILPL1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RILPL1
ThermoFisher Antibodies for RILPL1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RILPL1
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