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Aliases for RIBC2 Gene

Aliases for RIBC2 Gene

  • RIB43A Domain With Coiled-Coils 2 2 3
  • C22orf11 3 4
  • RIB43A-Like With Coiled-Coils Protein 2 3
  • Chromosome 22 Open Reading Frame 11 2
  • TRIB 3

External Ids for RIBC2 Gene

Previous Symbols for RIBC2 Gene

  • C22orf11

Summaries for RIBC2 Gene

GeneCards Summary for RIBC2 Gene

RIBC2 (RIB43A Domain With Coiled-Coils 2) is a Protein Coding gene. An important paralog of this gene is RIBC1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RIBC2 Gene

Genomics for RIBC2 Gene

Genomic Location for RIBC2 Gene

Start:
45,413,691 bp from pter
End:
45,432,496 bp from pter
Size:
18,806 bases
Orientation:
Plus strand

Genomic View for RIBC2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RIBC2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RIBC2 Gene

Regulatory Elements for RIBC2 Gene

Proteins for RIBC2 Gene

  • Protein details for RIBC2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H4K1-RIBC2_HUMAN
    Recommended name:
    RIB43A-like with coiled-coils protein 2
    Protein Accession:
    Q9H4K1
    Secondary Accessions:
    • Q6ICD0
    • Q9Y413

    Protein attributes for RIBC2 Gene

    Size:
    309 amino acids
    Molecular mass:
    37060 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RIBC2 Gene

Proteomics data for RIBC2 Gene at MOPED

Post-translational modifications for RIBC2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RIBC2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RIBC2 Gene

Domains for RIBC2 Gene

Protein Domains for RIBC2 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

RIBC2_HUMAN
Family:
  • Belongs to the RIB43A family.:
    • Q9H4K1
genes like me logo Genes that share domains with RIBC2: view

No data available for Gene Families for RIBC2 Gene

Function for RIBC2 Gene

Gene Ontology (GO) - Molecular Function for RIBC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 22458338
genes like me logo Genes that share ontologies with RIBC2: view

miRNA for RIBC2 Gene

miRTarBase miRNAs that target RIBC2

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RIBC2 Gene

Localization for RIBC2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RIBC2 Gene COMPARTMENTS Subcellular localization image for RIBC2 gene
Compartment Confidence
nucleus 3
cytosol 1
extracellular 1
golgi apparatus 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RIBC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
genes like me logo Genes that share ontologies with RIBC2: view

Pathways for RIBC2 Gene

SuperPathways for RIBC2 Gene

No Data Available

Interacting Proteins for RIBC2 Gene

Gene Ontology (GO) - Biological Process for RIBC2 Gene

None

No data available for Pathways by source for RIBC2 Gene

Transcripts for RIBC2 Gene

Unigene Clusters for RIBC2 Gene

RIB43A domain with coiled-coils 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RIBC2 Gene

No ASD Table

Relevant External Links for RIBC2 Gene

GeneLoc Exon Structure for
RIBC2
ECgene alternative splicing isoforms for
RIBC2

Expression for RIBC2 Gene

mRNA expression in normal human tissues for RIBC2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RIBC2 Gene

This gene is overexpressed in Testis (27.9).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for RIBC2 Gene

SOURCE GeneReport for Unigene cluster for RIBC2 Gene Hs.475110

genes like me logo Genes that share expressions with RIBC2: view

Orthologs for RIBC2 Gene

This gene was present in the common ancestor of animals.

Orthologs for RIBC2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RIBC2 36
  • 99.2 (n)
  • 98.41 (a)
RIBC2 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RIBC2 36
  • 85.41 (n)
  • 81.17 (a)
RIBC2 37
  • 80 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RIBC2 36
  • 86.03 (n)
  • 84.35 (a)
RIBC2 37
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ribc2 36
  • 79.31 (n)
  • 70.03 (a)
Ribc2 16
Ribc2 37
  • 70 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RIBC2 37
  • 57 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RIBC2 37
  • 55 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ribc2 36
  • 79.84 (n)
  • 70.82 (a)
chicken
(Gallus gallus)
Aves RIBC2 36
  • 63.34 (n)
  • 58.76 (a)
RIBC2 37
  • 58 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RIBC2 37
  • 57 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ribc2 36
  • 59.87 (n)
  • 54.16 (a)
zebrafish
(Danio rerio)
Actinopterygii ribc2 36
  • 49.44 (n)
  • 40.96 (a)
ribc2 37
  • 39 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001735 36
  • 48.85 (n)
  • 39.39 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG7264 36
  • 42.88 (n)
  • 31.56 (a)
CG7264 37
  • 31 (a)
OneToMany
Species with no ortholog for RIBC2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RIBC2 Gene

ENSEMBL:
Gene Tree for RIBC2 (if available)
TreeFam:
Gene Tree for RIBC2 (if available)

Paralogs for RIBC2 Gene

Paralogs for RIBC2 Gene

Selected SIMAP similar genes for RIBC2 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RIBC2: view

Variants for RIBC2 Gene

Sequence variations from dbSNP and Humsavar for RIBC2 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs717294 -- 45,429,781(-) CAGCA(A/G)TACTG intron-variant
rs717295 -- 45,429,741(-) CCAGA(C/T)GGTCC intron-variant
rs738227 -- 45,432,714(+) AATGC(A/G)AGCTC downstream-variant-500B
rs738228 -- 45,432,896(+) aagGA(G/T)AAGTG downstream-variant-500B
rs1022476 -- 45,425,835(+) TCCTG(C/T)TGCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RIBC2 Gene

Variant ID Type Subtype PubMed ID
dgv1411e1 CNV Complex 17122850
nsv9921 CNV Gain+Loss 18304495
esv34218 CNV Gain 17911159
nsv471210 CNV Gain 18288195
nsv515690 CNV Gain+Loss 19592680
nsv834221 CNV Loss 17160897
nsv3651 CNV Insertion 18451855
esv2724402 CNV Deletion 23290073
nsv525550 CNV Loss 19592680

Relevant External Links for RIBC2 Gene

HapMap Linkage Disequilibrium report
RIBC2

Disorders for RIBC2 Gene

Relevant External Links for RIBC2

Genetic Association Database (GAD)
RIBC2
genes like me logo Genes that share disorders with RIBC2: view

No data available for UniProtKB/Swiss-Prot for RIBC2 Gene

Publications for RIBC2 Gene

  1. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Genomic structure and expression analysis of the mouse testis-specific ribbon protein (Trib) gene. (PMID: 15563848) Arango N.A. … Teixeira J. (Gene 2004) 3

Products for RIBC2 Gene

Sources for RIBC2 Gene

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