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Aliases for RHPN1-AS1 Gene

Subcategory (RNA class) for RHPN1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for RHPN1-AS1 Gene

  • RHPN1 Antisense RNA 1 (Head To Head) 2 3
  • RHPN1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • RHPN1 Antisense RNA 1 2 4
  • C8orf51 3 4
  • Chromosome 8 Open Reading Frame 51 2
  • RHPN1 Antisense Gene Protein 1 4

External Ids for RHPN1-AS1 Gene

ORGUL Members for RHPN1-AS1 Gene

Previous HGNC Symbols for RHPN1-AS1 Gene

  • C8orf51

Previous GeneCards Identifiers for RHPN1-AS1 Gene

  • GC08M144449

Summaries for RHPN1-AS1 Gene

GeneCards Summary for RHPN1-AS1 Gene

RHPN1-AS1 (RHPN1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RHPN1-AS1 Gene

Genomics for RHPN1-AS1 Gene

Genomic Location for RHPN1-AS1 Gene

Start:
143,366,623 bp from pter
End:
143,368,635 bp from pter
Size:
2,013 bases
Orientation:
Minus strand

Genomic View for RHPN1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RHPN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RHPN1-AS1 Gene

No data available for Regulatory Elements for RHPN1-AS1 Gene

Proteins for RHPN1-AS1 Gene

  • Protein details for RHPN1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BWJ2-RHAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by RHPN1-AS1
    Protein Accession:
    Q9BWJ2
    Secondary Accessions:

    Protein attributes for RHPN1-AS1 Gene

    Size:
    59 amino acids
    Molecular mass:
    6658 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RHPN1-AS1 Gene

Proteomics data for RHPN1-AS1 Gene at MOPED

Post-translational modifications for RHPN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RHPN1-AS1 Gene

Domains for RHPN1-AS1 Gene

Gene Families for RHPN1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for RHPN1-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RHPN1-AS1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RHPN1-AS1 Gene

Function for RHPN1-AS1 Gene

Gene Ontology (GO) - Molecular Function for RHPN1-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with RHPN1-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RHPN1-AS1 Gene

Localization for RHPN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RHPN1-AS1 Gene

Pathways for RHPN1-AS1 Gene

SuperPathways for RHPN1-AS1 Gene

No Data Available

Interacting Proteins for RHPN1-AS1 Gene

Selected Interacting proteins: Q9BWJ2-RHAS1_HUMAN for RHPN1-AS1 Gene via UniProtKB

Symbol External ID(s) Details
KRT38

Gene Ontology (GO) - Biological Process for RHPN1-AS1 Gene

None

No data available for Pathways by source for RHPN1-AS1 Gene

Transcripts for RHPN1-AS1 Gene

mRNA/cDNA for RHPN1-AS1 Gene

(19) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RHPN1-AS1 Gene

RHPN1 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RHPN1-AS1 Gene

No ASD Table

Relevant External Links for RHPN1-AS1 Gene

GeneLoc Exon Structure for
RHPN1-AS1
ECgene alternative splicing isoforms for
RHPN1-AS1

Expression for RHPN1-AS1 Gene

mRNA expression in normal human tissues for RHPN1-AS1 Gene

SOURCE GeneReport for Unigene cluster for RHPN1-AS1 Gene Hs.245886

genes like me logo Genes that share expressions with RHPN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RHPN1-AS1 Gene

Orthologs for RHPN1-AS1 Gene

Evolution for RHPN1-AS1 Gene

ENSEMBL:
Gene Tree for RHPN1-AS1 (if available)
TreeFam:
Gene Tree for RHPN1-AS1 (if available)

No data available for Orthologs for RHPN1-AS1 Gene

Paralogs for RHPN1-AS1 Gene

No data available for Paralogs for RHPN1-AS1 Gene

Variants for RHPN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for RHPN1-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs2450763 -- 143,366,223(+) CCGGC(A/G)CTCAC downstream-variant-500B
rs10642629 -- 143,366,508(+) CTCCA(-/AC)ACACA downstream-variant-500B
rs11418673 -- 143,366,144(+) TTTTT(-/C)CTTTA downstream-variant-500B
rs35198976 -- 143,366,415(+) GGAAA(-/CT)CTAAA downstream-variant-500B
rs56081747 -- 143,366,143(+) TTTTT(C/T)CTTTA downstream-variant-500B

Relevant External Links for RHPN1-AS1 Gene

HapMap Linkage Disequilibrium report
RHPN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RHPN1-AS1 Gene

Disorders for RHPN1-AS1 Gene

No disorders were found for RHPN1-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for RHPN1-AS1 Gene

Publications for RHPN1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4

Products for RHPN1-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RHPN1-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RHPN1-AS1
    • Block miRNA regulation of RHPN1-AS1 using miScript Target Protectors

    Sources for RHPN1-AS1 Gene

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