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Aliases for RHPN1-AS1 Gene

Subcategory (RNA class) for RHPN1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for RHPN1-AS1 Gene

  • RHPN1 Antisense RNA 1 (Head To Head) 2 3 5
  • RHPN1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • RHPN1 Antisense RNA 1 2 4
  • C8orf51 3 4
  • Chromosome 8 Open Reading Frame 51 2
  • RHPN1 Antisense Gene Protein 1 4

External Ids for RHPN1-AS1 Gene

ORGUL Members for RHPN1-AS1 Gene

Previous HGNC Symbols for RHPN1-AS1 Gene

  • C8orf51

Previous GeneCards Identifiers for RHPN1-AS1 Gene

  • GC08M144449

Summaries for RHPN1-AS1 Gene

GeneCards Summary for RHPN1-AS1 Gene

RHPN1-AS1 (RHPN1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RHPN1-AS1 Gene

Genomics for RHPN1-AS1 Gene

Regulatory Elements for RHPN1-AS1 Gene

Enhancers for RHPN1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G143366 0.8 ENCODE 0.7 +1.8 1750 0.2 ATF1 CREB3L1 ZNF766 EGR1 ZBTB11 USF2 REST ZNF592 TFDP1 MBD2 PIR36498 RHPN1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RHPN1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RHPN1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000232070 -265 1401 PKNOX1 ATF1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZBTB7B GLIS2 FOS

Genomic Location for RHPN1-AS1 Gene

Chromosome:
8
Start:
143,366,623 bp from pter
End:
143,368,635 bp from pter
Size:
2,013 bases
Orientation:
Minus strand

Genomic View for RHPN1-AS1 Gene

Genes around RHPN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RHPN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RHPN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RHPN1-AS1 Gene

Proteins for RHPN1-AS1 Gene

  • Protein details for RHPN1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BWJ2-RHAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by RHPN1-AS1
    Protein Accession:
    Q9BWJ2

    Protein attributes for RHPN1-AS1 Gene

    Size:
    59 amino acids
    Molecular mass:
    6658 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RHPN1-AS1 Gene

Post-translational modifications for RHPN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RHPN1-AS1 Gene

Domains & Families for RHPN1-AS1 Gene

Protein Domains for RHPN1-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RHPN1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RHPN1-AS1 Gene

Function for RHPN1-AS1 Gene

Gene Ontology (GO) - Molecular Function for RHPN1-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with RHPN1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RHPN1-AS1 Gene

Localization for RHPN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RHPN1-AS1 Gene

Pathways & Interactions for RHPN1-AS1 Gene

SuperPathways for RHPN1-AS1 Gene

No Data Available

Interacting Proteins for RHPN1-AS1 Gene

Selected Interacting proteins: Q9BWJ2-RHAS1_HUMAN for RHPN1-AS1 Gene via IID UniProtKB

Symbol External ID(s) Details
KRT38

Gene Ontology (GO) - Biological Process for RHPN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RHPN1-AS1 Gene

Drugs & Compounds for RHPN1-AS1 Gene

No Compound Related Data Available

Transcripts for RHPN1-AS1 Gene

mRNA/cDNA for RHPN1-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(19) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RHPN1-AS1 Gene

RHPN1 antisense RNA 1 (head to head):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RHPN1-AS1 Gene

No ASD Table

Relevant External Links for RHPN1-AS1 Gene

GeneLoc Exon Structure for
RHPN1-AS1
ECgene alternative splicing isoforms for
RHPN1-AS1

Expression for RHPN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RHPN1-AS1 Gene

SOURCE GeneReport for Unigene cluster for RHPN1-AS1 Gene:

Hs.245886
genes like me logo Genes that share expression patterns with RHPN1-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RHPN1-AS1 Gene

Orthologs for RHPN1-AS1 Gene

Evolution for RHPN1-AS1 Gene

ENSEMBL:
Gene Tree for RHPN1-AS1 (if available)
TreeFam:
Gene Tree for RHPN1-AS1 (if available)

No data available for Orthologs for RHPN1-AS1 Gene

Paralogs for RHPN1-AS1 Gene

No data available for Paralogs for RHPN1-AS1 Gene

Variants for RHPN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for RHPN1-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000829922 -- 143,368,763(+) CGAAG(C/T)GGCAT upstream-variant-2KB
rs1000944052 -- 143,368,616(+) CGCCG(A/C)GGCGC nc-transcript-variant, upstream-variant-2KB
rs1000983908 -- 143,366,356(+) CACAT(A/G)TAACA downstream-variant-500B
rs1001532407 -- 143,367,121(+) GGTGG(A/G)AACCC nc-transcript-variant, upstream-variant-2KB
rs1001681492 -- 143,366,262(+) TCCCT(G/T)CCTGT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RHPN1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3619106 CNV gain 21293372
esv3619107 CNV gain 21293372
nsv470247 CNV loss 18288195
nsv612765 CNV loss 21841781
nsv824761 CNV gain 20364138
nsv950012 CNV deletion 24416366

Relevant External Links for RHPN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RHPN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RHPN1-AS1 Gene

Disorders for RHPN1-AS1 Gene

Relevant External Links for RHPN1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RHPN1-AS1

No disorders were found for RHPN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RHPN1-AS1 Gene

Publications for RHPN1-AS1 Gene

  1. The Long Non-Coding RNA RHPN1-AS1 Promotes Uveal Melanoma Progression. (PMID: 28124977) Lu L. … Fan X. (Int J Mol Sci 2017) 2 3 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for RHPN1-AS1 Gene

Sources for RHPN1-AS1 Gene

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