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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RHOXF2 Gene

protein-coding   GIFtS: 44
GCID: GC0XP119292

Rhox Homeobox Family, Member 2

  Search for RHOXF2
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Rhox Homeobox Family, Member 21 2     CT1072
PEPP22 3 5     PEPP-22
Cancer/Testis Antigen 1071 2     Homeobox Protein From AL5905262
Paired-Like Homeobox Protein PEPP-22 3     PEPP Subfamily Gene 22
Testis Homeobox Gene 12 3     Rhox Homeobox Family Member 22
THG12 3     

External Ids:    HGNC: 300111   Entrez Gene: 845282   Ensembl: ENSG000001317217   OMIM: 3004475   UniProtKB: Q9BQY43   

Export aliases for RHOXF2 gene to outside databases

Previous GC identifers: GC0XP119177 GC0XP108744


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for RHOXF2 Gene: 
RHOXF2 (Rhox homeobox family, member 2) is a protein-coding gene. GO annotations related to this gene include sequence-specific DNA binding and sequence-specific DNA binding transcription factor activity. An important paralog of this gene is GSC.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000023.10  NT_011786.16  NC_018934.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RHOXF2 gene promoter:
         MZF-1   Pax-5   POU6F1 (c2)   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRHOXF2 promoter sequence
   Search SABiosciences Chromatin IP Primers for RHOXF2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RHOXF2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq24   Ensembl cytogenetic band:  Xq24   HGNC cytogenetic band: Xq24

RHOXF2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RHOXF2 gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP119292:  view genomic region     (about GC identifiers)

Start:
119,292,467 bp from pter      End:
119,297,945 bp from pter
Size:
5,479 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: RHXF2_HUMAN, Q9BQY4 (See protein sequence)
Recommended Name: Rhox homeobox family member 2  
Size: 288 amino acids; 31692 Da
Subcellular location: Nucleus (By similarity)
Secondary accessions: Q9BR00

Explore the universe of human proteins at neXtProt for RHOXF2: NX_Q9BQY4

Explore proteomics data for RHOXF2 at MOPED 

RHOXF2 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

RHOXF2 Protein Expression

REFSEQ proteins: NP_115887.1  
ENSEMBL proteins: 
 ENSP00000360441  

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--

RHOXF2 for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
PRD: Homeoboxes / PRD class

3 InterPro protein domains:
 IPR017970 Homeobox_CS
 IPR001356 Homeodomain
 IPR009057 Homeodomain-like

Graphical View of Domain Structure for InterPro Entry Q9BQY4

ProtoNet protein and cluster: Q9BQY4

UniProtKB/Swiss-Prot: RHXF2_HUMAN, Q9BQY4
Similarity: Belongs to the paired-like homeobox family. PEPP subfamily
Similarity: Contains 1 homeobox DNA-binding domain


RHOXF2 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

     Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003677DNA binding ----
GO:0003700sequence-specific DNA binding transcription factor activity IEA--
GO:0005515protein binding IPI16189514
GO:0043565sequence-specific DNA binding IEA--
     
RHOXF2 for ontologies           About GeneDecksing


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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section




Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RHOXF2

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/93 Interacting proteins for RHOXF2 (Q9BQY41, 2, 3 ENSP000003604414) via UniProtKB, MINT, STRING, and/or I2D (see all 93)
InteractantInteraction Details
GeneCardExternal ID(s)
EFEMP2O959671, 2, 3, ENSP000003099534EBI-372094,EBI-743414 MINT-68138 I2D: score=5 STRING: ENSP00000309953
ATN1P542592, 3, ENSP000003490764MINT-2877289 MINT-2855044 I2D: score=2 STRING: ENSP00000349076
CCNKO759092, 3, ENSP000003745294MINT-67823 I2D: score=5 STRING: ENSP00000374529
CLASRPQ8N2M82, 3, ENSP000002214554MINT-68015 I2D: score=5 STRING: ENSP00000221455
RADILQ96JH82, 3, ENSP000003824924MINT-66865 I2D: score=5 STRING: ENSP00000382492
About this table

Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006355regulation of transcription, DNA-dependent ----

RHOXF2 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for RHOXF2 (RHXF2)

Search CenterWatch for drugs/clinical trials and news about RHOXF2 / RHXF2

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for RHOXF2 gene: 
NM_032498.1  

Unigene Cluster for RHOXF2:

Rhox homeobox family, member 2
Hs.567620  [show with all ESTs]
Unigene Representative Sequence: AL590526
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000371388(uc004esl.4)
miRNA
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Inhib. RNA
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Additional mRNA sequence: 

AF317219.1 AK058125.1 AL590524.1 AL590526.1 BC021719.2 

3 DOTS entries:

DT.100728321  DT.306192  DT.121298822 

24 AceView cDNA sequences:

BE046930 AL590524 AI209091 AI657125 BG187299 AI954612 CA424288 BP369633 
BI460790 AA933590 BG212049 BX093928 BG719503 CB161165 BQ772544 BG187298 
BG184794 CB160268 BG217511 BG198630 BI561356 BI831246 R69179 BG215382 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

RHOXF2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GGGTCAGTAA
RHOXF2 Expression
About this image


See RHOXF2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RHOXF2

SOURCE GeneReport for Unigene cluster: Hs.567620

UniProtKB/Swiss-Prot: RHXF2_HUMAN, Q9BQY4
Tissue specificity: Testis. Not detected in epididymis nor placenta

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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RHOXF2

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
  --

ENSEMBL Gene Tree for RHOXF2 (if available)
TreeFam Gene Tree for RHOXF2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for RHOXF2 gene
RHOXF2B1 2  GSC2  PITX12  OTX22  UNCX2  VSX12  HESX12  PITX22  
VSX22  RHOXF12  PITX32  DMBX12  ESX12  GSC22  OTX12  CRX2  
1 SIMAP similar gene for RHOXF2 using alignment to 1 protein entry:     RHXF2_HUMAN:
RHOXF2B

RHOXF2 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/43 SNPs in RHOXF2 are shown (see all 43)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr X posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1893326271,2
--119291951(+) CAGAGC/TGAGAC 1 -- us2k10--------
rs66555161,2
--119291957(+) gagacC/Tgtctc 1 -- us2k10--------
rs4454731,2
--119291984(+) AAAAAA/GAAAGA 1 -- us2k1 trp30--------
rs1995809381,2
--119292777(+) CAGGAA/GACCAA 1 -- int10--------
rs2015665091,2
--119292782(+) AACCAA/GGGTTC 1 -- int10--------
rs1486041521,2
C,F--119293043(+) AAGGCG/AGAGAA 2 /R /G mis11Minor allele frequency- A:0.00NA 2746
rs1466825911,2
F--119293084(+) GGCGGC/TGGCGC 2 G syn11Minor allele frequency- T:0.00NA 4116
rs1455010051,2
C,F--119293088(+) GCGGCG/ACCGGA 2 /T /A mis11Minor allele frequency- A:0.01NA 4264
rs1493406011,2
C,F--119293108(+) CACCTA/GTGGGA 2 L syn11Minor allele frequency- G:0.01NA 4388
rs1463119581,2
C--119293118(+) AAGGAA/GACCTC 2 N D mis10--------

HapMap Linkage Disequilibrium report for RHOXF2 (119292467 - 119297945 bp)

Structural Variations
     Database of Genomic Variants (DGV) 5 variations for RHOXF2:    About this table     
Variant IDTypeSubtypePubMed ID
nsv9971CNV Gain18304495
nsv526653CNV Gain19592680
nsv9970CNV Gain18304495
dgv2469e1CNV Complex17122850
nsv7457OTHER Inversion18451855

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

RHOXF2 for disorders           About MalaCards
OMIM gene information: 300447    OMIM disorders: --


RHOXF2 for disorders           About GeneDecksing


Export disorders for RHOXF2 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for RHOXF2 gene, integrated from 9 sources (see all 15):
(articles sorted by number of sources associating them with RHOXF2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Two novel human X-linked homeobox genes, hPEPP1 and hPEPP2, selectively expressed in the testis. (PubMed id 12490318)1, 2, 3 Wayne C.M....Wilkinson M.F. (2002)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
  4. Identification of RHOXF2 (PEPP2) as a cancer-promotin g gene by expression cloning. (PubMed id 21874235)1 Shibata-Minoshima F....Kitamura T. (2012)
  5. A likely role for a novel PH-domain containing protein , PEPP2, in connecting membrane and cytoskeleton. (PubMed id 23682428)1 Zou Y. and Zhong W. (2012)
  6. Kinetic analysis of 3'-5' nucleotide addition catalyze d by eukaryotic tRNA(His) guanylyltransferase. (PubMed id 22136300)1 Smith B.A. and Jackman J.E. (2012)
  7. Rapid evolution and copy number variation of primate R HOXF2, an X-linked homeobox gene involved in male reproduction and possibly brai n function. (PubMed id 21988730)1 Niu A.L....Su B. (2011)
  8. An atlas of combinatorial transcriptional regulation in mouse and man. (PubMed id 20211142)1 Ravasi T....Hayashizaki Y. (2010)
  9. An empirical framework for binary interactome mapping . (PubMed id 19060904)1 Venkatesan K....Vidal M. (2009)
  10. Shifted Transversal Design smart-pooling for high cov erage interactome mapping. (PubMed id 19447967)1 Xin X....Thierry-Mieg N. (2009)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 84528 HGNC: 30011 AceView: PEPP-2.1 Ensembl:ENSG00000131721 euGenes: HUgn84528
ECgene: RHOXF2 H-InvDB: RHOXF2

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for RHOXF2 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for RHOXF2 gene:
Search GeneIP for patents involving RHOXF2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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