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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RHOXF1 Gene

protein-coding   GIFtS: 45
GCID: GC0XM119243

Rhox Homeobox Family, Member 1

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Rhox Homeobox Family, Member 11 2     Paired-Like Homeobox Protein PEPP-12 3
OTEX2 3 5     PEPP Subfamily Gene 12
PEPP12 3 5     Rhox Homeobox Family Member 12
Ovary-, Testis- And Epididymis-Expressed Gene Protein2 3     

External Ids:    HGNC: 299931   Entrez Gene: 1588002   Ensembl: ENSG000001018837   OMIM: 3004465   UniProtKB: Q8NHV93   

Export aliases for RHOXF1 gene to outside databases

Previous GC identifers: GC0XM119128 GC0XM108694


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RHOXF1 Gene:
This gene is a member of the PEPP subfamily of paired-like homoebox genes. The gene may be regulated by androgens
and epigenetic mechanisms. The encoded nuclear protein is likely a transcription factor that may play a role in
human reproduction. (provided by RefSeq, Dec 2012)

GeneCards Summary for RHOXF1 Gene: 
RHOXF1 (Rhox homeobox family, member 1) is a protein-coding gene. Diseases associated with RHOXF1 include endometrial adenocarcinoma, and acute lymphocytic leukemia. GO annotations related to this gene include transcription regulatory region sequence-specific DNA binding and sequence-specific DNA binding transcription factor activity. An important paralog of this gene is VSX1.

UniProtKB/Swiss-Prot: RHXF1_HUMAN, Q8NHV9
Function: May be a transcription factor involved in reproductive processes

Gene Wiki entry for RHOXF1 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000023.10  NC_018934.2  NT_011786.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RHOXF1 gene promoter:
         SRF   FAC1   HOXA3   POU3F1   SRF (504 AA)   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRHOXF1 promoter sequence
   Search SABiosciences Chromatin IP Primers for RHOXF1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RHOXF1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq24   Ensembl cytogenetic band:  Xq24   HGNC cytogenetic band: Xq24

RHOXF1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RHOXF1 gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XM119243:  view genomic region     (about GC identifiers)

Start:
119,243,011 bp from pter      End:
119,249,847 bp from pter
Size:
6,837 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: RHXF1_HUMAN, Q8NHV9 (See protein sequence)
Recommended Name: Rhox homeobox family member 1  
Size: 184 amino acids; 20542 Da
Subunit: Does not interact with itself
Subcellular location: Nucleus
Sequence caution: Sequence=AAC78617.1; Type=Erroneous gene model prediction;
Secondary accessions: O95030 Q3SYE0

Explore the universe of human proteins at neXtProt for RHOXF1: NX_Q8NHV9

Explore proteomics data for RHOXF1 at MOPED 

RHOXF1 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

RHOXF1 Protein Expression

REFSEQ proteins: NP_644811.1  
ENSEMBL proteins: 
 ENSP00000217999  

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IDA11980563

RHOXF1 for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
PRD: Homeoboxes / PRD class

4 InterPro protein domains:
 IPR000047 HTH_motif
 IPR017970 Homeobox_CS
 IPR001356 Homeodomain
 IPR009057 Homeodomain-like

Graphical View of Domain Structure for InterPro Entry Q8NHV9

ProtoNet protein and cluster: Q8NHV9

1 Blocks protein domain: IPB000047 Lambda and other repressor helix-turn-helix signature

UniProtKB/Swiss-Prot: RHXF1_HUMAN, Q8NHV9
Domain: Mutagenesis of amino acids 147 to 164 and 155 to 164 lead to a major cytoplasmic localization, with only
minor localization in the nucleus
Similarity: Belongs to the paired-like homeobox family. PEPP subfamily
Similarity: Contains 1 homeobox DNA-binding domain


RHOXF1 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: RHXF1_HUMAN, Q8NHV9
Function: May be a transcription factor involved in reproductive processes
Induction: By androgen

     Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0000976transcription regulatory region sequence-specific DNA binding IEA--
GO:0003677DNA binding NAS11980563
GO:0003700sequence-specific DNA binding transcription factor activity NAS12490318
GO:0043565sequence-specific DNA binding ----
     
RHOXF1 for ontologies           About GeneDecksing


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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RHOXF1

STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

3 Interacting proteins for RHOXF1 (Q8NHV93 ENSP000002179994) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
NPAS2Q997433, ENSP000003382834I2D: score=1 STRING: ENSP00000338283
ATG10Q9H0Y03I2D: score=1 
VTNENSP000002262184STRING: ENSP00000226218
About this table

Gene Ontology (GO): 5/6 biological process terms (GO ID links to tree view) (see all 6):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006351transcription, DNA-dependent IEA--
GO:0006355regulation of transcription, DNA-dependent NAS11980563
GO:0007275multicellular organismal development NAS11980563
GO:0007276gamete generation NAS11980563
GO:0019953sexual reproduction IEP11980563

RHOXF1 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for RHOXF1 (RHXF1)

Search CenterWatch for drugs/clinical trials and news about RHOXF1 / RHXF1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for RHOXF1 gene: 
NM_139282.2  

Unigene Cluster for RHOXF1:

Rhox homeobox family, member 1
Hs.644617  [show with all ESTs]
Unigene Representative Sequence: NM_139282
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000217999(uc004esk.1)
miRNA
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  QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RHOXF1

Additional mRNA sequence: 

AY099086.1 BC069324.1 BC069529.1 BC103857.1 BC103858.1 

1 DOTS entry:

DT.99999268 

12 AceView cDNA sequences:

AA361117 AY099086 NM_139282 AI632198 AI808668 BC069324 BC069529 BF223228 
BE675048 AW295191 AI631510 AI631511 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

RHOXF1 expression in normal human tissues (normalized intensities)      RHOXF1 embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: CCGCTCAGGC
RHOXF1 Expression
About this image


RHOXF1 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database 
 5/2 selected tissues (see all 2) fully expand
 
 Pancreas (Endocrine System)
         Posterior foregut-like cells ( A scalable, suspension protocol for derivation of...
 
 Testis (Reproductive System)

See RHOXF1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RHOXF1

SOURCE GeneReport for Unigene cluster: Hs.644617

UniProtKB/Swiss-Prot: RHXF1_HUMAN, Q8NHV9
Tissue specificity: Ovary, testis and epididymis. Also detected in the prostate and the mammary gland. Expressed
in many tumor cell lines derived from acute lymphocytic leukemia, prostate, endometrial adenocarcinoma, melanoma,
bladder carcinoma, colon carcinoma, erythroleukemia and breast carcinoma. Not expressed in placenta

    SABiosciences Custom PCR Arrays for RHOXF1
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QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RHOXF1
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RHOXF1

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
  --

ENSEMBL Gene Tree for RHOXF1 (if available)
TreeFam Gene Tree for RHOXF1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for RHOXF1 gene
VSX12  HESX12  PITX22  DMBX12  OTX12  RHOXF2B2  CRX2  PITX12  
GSC2  OTX22  UNCX2  RHOXF22  VSX22  ESX12  PITX32  GSC22  
2 SIMAP similar genes for RHOXF1 using alignment to 1 protein entry:     RHXF1_HUMAN:
ESX1    SHOX2

RHOXF1 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/158 SNPs in RHOXF1 are shown (see all 158)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr X posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1457122771,2
C--119242556(+) CACAAC/TGACGC 1 -- ds50010--------
rs1888440101,2
--119242639(+) CTTGTA/CATTTT 1 -- ds50010--------
rs1921061681,2
--119242653(+) TAAATG/TGCTTT 1 -- ds50010--------
rs2009389641,2
--119242657(+) TGGCT-/TTCTTTTT 1 -- ds50010--------
rs1838324491,2
--119242772(+) ATAGCG/TGGGAT 1 -- ds50010--------
rs120120971,2
C,F,A,H--119242899(+) CCTCCT/CAAAGT 1 -- ds50013Minor allele frequency- C:0.33NA 6
rs1870688101,2
--119242933(+) CTGCAC/TCTGGC 1 -- ds50010--------
rs1911627871,2
--119242947(+) AAATGC/GCTTTT 1 -- ds50010--------
rs1845845251,2
C--119243122(+) AACTAA/GCTCCT 1 -- ut310--------
rs1380608801,2
C,F--119243176(+) ACAGTC/G/TGTCTG 3 N H D mis11NA 4550

HapMap Linkage Disequilibrium report for RHOXF1 (119243011 - 119249847 bp)

Structural Variations
     Database of Genomic Variants (DGV) 4 variations for RHOXF1:    About this table     
Variant IDTypeSubtypePubMed ID
esv1505897CNV Insertion17803354
nsv526653CNV Gain19592680
dgv2469e1CNV Complex17122850
nsv7457OTHER Inversion18451855

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
OMIM gene information: 300446    OMIM disorders: --

7 diseases for RHOXF1:    About MalaCards
endometrial adenocarcinoma    acute lymphocytic leukemia    bladder carcinoma    adenocarcinoma
melanoma    leukemia    prostatitis


RHOXF1 for disorders           About GeneDecksing


Export disorders for RHOXF1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for RHOXF1 gene, integrated from 9 sources (see all 13):
(articles sorted by number of sources associating them with RHOXF1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. OTEX, an androgen-regulated human member of the paired-like class of homeobox genes. (PubMed id 11980563)1, 2, 3, 9 Geserick C.... Haendler B. (2002)
  2. Two novel human X-linked homeobox genes, hPEPP1 and hPEPP2, selectively expressed in the testis. (PubMed id 12490318)1, 2, 3 Wayne C.M....Wilkinson M.F. (2002)
  3. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (2005)
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
  5. Toward an understanding of the protein interaction net work of the human liver. (PubMed id 21988832)1 Wang J....Yang X. (2011)
  6. Homeobox gene Rhox5 is regulated by epigenetic mechani sms in cancer and stem cells and promotes cancer growth. (PubMed id 21609483)1 Li Q....Guo Z.S. (2011)
  7. An atlas of combinatorial transcriptional regulation in mouse and man. (PubMed id 20211142)1 Ravasi T....Hayashizaki Y. (2010)
  8. Three epigenetic drugs up-regulate homeobox gene Rhox 5 in cancer cells through overlapping and distinct molecular mechanisms. (PubMed id 19679824)1 Li Q....Guo Z.S. (2009)
  9. A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. (PubMed id 16713569)1 Lim J.... Zoghbi H.Y. (2006)
  10. Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (2005)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 158800 HGNC: 29993 AceView: OTEX Ensembl:ENSG00000101883 euGenes: HUgn158800
ECgene: RHOXF1 H-InvDB: RHOXF1

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for RHOXF1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for RHOXF1 gene:
Search GeneIP for patents involving RHOXF1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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