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RHOXF1 Gene

protein-coding   GIFtS: 46
GCID: GC0XM119243

Rhox Homeobox Family, Member 1

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Rhox Homeobox Family, Member 11 2     Paired-Like Homeobox Protein PEPP-12 3
OTEX2 3 5     PEPP Subfamily Gene 12
PEPP12 3 5     Rhox Homeobox Family Member 12
Ovary-, Testis- And Epididymis-Expressed Gene Protein2 3     

External Ids:    HGNC: 299931   Entrez Gene: 1588002   Ensembl: ENSG000001018837   OMIM: 3004465   UniProtKB: Q8NHV93   

Export aliases for RHOXF1 gene to outside databases

Previous GC identifers: GC0XM119128 GC0XM108694


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for RHOXF1 Gene:
This gene is a member of the PEPP subfamily of paired-like homoebox genes. The gene may be regulated by androgens
and epigenetic mechanisms. The encoded nuclear protein is likely a transcription factor that may play a role in
human reproduction. (provided by RefSeq, Dec 2012)

GeneCards Summary for RHOXF1 Gene:
RHOXF1 (Rhox homeobox family, member 1) is a protein-coding gene. Diseases associated with RHOXF1 include endometrial adenocarcinoma, and acute lymphocytic leukemia. GO annotations related to this gene include transcription regulatory region sequence-specific DNA binding and sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ESX1.

UniProtKB/Swiss-Prot: RHXF1_HUMAN, Q8NHV9
Function: May be a transcription factor involved in reproductive processes

Gene Wiki entry for RHOXF1 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000023.11  NC_018934.2  NT_011786.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the RHOXF1 gene promoter:
         SRF   FAC1   HOXA3   POU3F1   SRF (504 AA)   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRHOXF1 promoter sequence
   Search Chromatin IP Primers for RHOXF1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RHOXF1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq24   Ensembl cytogenetic band:  Xq24   HGNC cytogenetic band: Xq24

RHOXF1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RHOXF1 gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XM119243:  view genomic region     (about GC identifiers)

Start:
119,243,011 bp from pter      End:
119,249,847 bp from pter
Size:
6,837 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
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UniProtKB/Swiss-Prot: RHXF1_HUMAN, Q8NHV9 (See protein sequence)
Recommended Name: Rhox homeobox family member 1  
Size: 184 amino acids; 20542 Da
Subunit: Does not interact with itself
Sequence caution: Sequence=AAC78617.1; Type=Erroneous gene model prediction;
Secondary accessions: O95030 Q3SYE0

Explore the universe of human proteins at neXtProt for RHOXF1: NX_Q8NHV9

Explore proteomics data for RHOXF1 at MOPED


See RHOXF1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_644811.1  
ENSEMBL proteins: 
 ENSP00000217999  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
PRD: Homeoboxes / PRD class

4 InterPro protein domains:
 IPR000047 HTH_motif
 IPR017970 Homeobox_CS
 IPR001356 Homeobox_dom
 IPR009057 Homeodomain-like

Graphical View of Domain Structure for InterPro Entry Q8NHV9

ProtoNet protein and cluster: Q8NHV9

1 Blocks protein domain: IPB000047 Lambda and other repressor helix-turn-helix signature

UniProtKB/Swiss-Prot: RHXF1_HUMAN, Q8NHV9
Domain: Mutagenesis of amino acids 147 to 164 and 155 to 164 lead to a major cytoplasmic localization, with only
minor localization in the nucleus
Similarity: Belongs to the paired-like homeobox family. PEPP subfamily
Similarity: Contains 1 homeobox DNA-binding domain


RHOXF1 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: RHXF1_HUMAN, Q8NHV9
Function: May be a transcription factor involved in reproductive processes
Induction: By androgen

     Gene Ontology (GO): 4 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0000976transcription regulatory region sequence-specific DNA binding IEA--
GO:0003677DNA binding NAS11980563
GO:0003700sequence-specific DNA binding transcription factor activity NAS12490318
GO:0043565sequence-specific DNA binding ----
     
RHOXF1 for ontologies           About GeneDecksing


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
RHXF1_HUMAN, Q8NHV9: Nucleus
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
nucleus5

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IDA11980563

RHOXF1 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RHOXF1
Interactions:

    Search GeneGlobe Interaction Network for RHOXF1

STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

4 Interacting proteins for RHOXF1 (Q8NHV93 ENSP000002179994) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
NPAS2Q997433, ENSP000003382834I2D: score=1 STRING: ENSP00000338283
ATG10Q9H0Y03I2D: score=1 
VTNENSP000002262184STRING: ENSP00000226218
CHEK2ENSP000003720234STRING: ENSP00000372023
About this table

Gene Ontology (GO): Selected biological process terms (see all 6):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006351transcription, DNA-templated IEA--
GO:0006355regulation of transcription, DNA-templated NAS11980563
GO:0007275multicellular organismal development NAS11980563
GO:0007276gamete generation NAS11980563
GO:0019953sexual reproduction IEP11980563

RHOXF1 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for RHOXF1 (RHXF1)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for RHOXF1 gene: 
NM_139282.2  

Unigene Cluster for RHOXF1:

Rhox homeobox family, member 1
Hs.644617  [show with all ESTs]
Unigene Representative Sequence: NM_139282
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000217999(uc004esk.1)
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Additional mRNA sequence: 

AY099086.1 BC069324.1 BC069529.1 BC103857.1 BC103858.1 

1 DOTS entry:

DT.99999268 

12 AceView cDNA sequences:

AY099086 AA361117 NM_139282 AI808668 AI632198 BC069324 BC069529 BF223228 
BE675048 AW295191 AI631510 AI631511 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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RHOXF1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: CCGCTCAGGC
RHOXF1 Expression
About this image

RHOXF1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

RHOXF1 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.644617

UniProtKB/Swiss-Prot: RHXF1_HUMAN, Q8NHV9
Tissue specificity: Ovary, testis and epididymis. Also detected in the prostate and the mammary gland. Expressed
in many tumor cell lines derived from acute lymphocytic leukemia, prostate, endometrial adenocarcinoma, melanoma,
bladder carcinoma, colon carcinoma, erythroleukemia and breast carcinoma. Not expressed in placenta

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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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ENSEMBL Gene Tree for RHOXF1 (if available)
TreeFam Gene Tree for RHOXF1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for RHOXF1 gene
ESX12  RHOXF22  RHOXF2B2  
2 SIMAP similar genes for RHOXF1 using alignment to 1 protein entry:     RHXF1_HUMAN:
ESX1    SHOX2

RHOXF1 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for RHOXF1 (see all 158)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr X posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1457122771,2
C--119242556(+) CACAAC/TGACGC 1 -- ds50010--------
rs1888440101,2
--119242639(+) CTTGTA/CATTTT 1 -- ds50010--------
rs1921061681,2
--119242653(+) TAAATG/TGCTTT 1 -- ds50010--------
rs2009389641,2
--119242657(+) TGGCT-/TTCTTTTT 1 -- ds50010--------
rs1838324491,2
--119242772(+) ATAGCG/TGGGAT 1 -- ds50010--------
rs120120971,2
C,F,A,H--119242899(+) CCTCCT/CAAAGT 1 -- ds50013Minor allele frequency- C:0.33NA 6
rs1870688101,2
--119242933(+) CTGCAC/TCTGGC 1 -- ds50010--------
rs1911627871,2
--119242947(+) AAATGC/GCTTTT 1 -- ds50010--------
rs1845845251,2
C--119243122(+) AACTAA/GCTCCT 1 -- ut310--------
rs1380608801,2
C,F--119243176(+) ACAGTC/G/TGTCTG 3 N H D mis11NA 4550

HapMap Linkage Disequilibrium report for RHOXF1 (119243011 - 119249847 bp)

Structural Variations
     Database of Genomic Variants (DGV) 4 variations for RHOXF1:    About this table    
Variant IDTypeSubtypePubMed ID
esv1505897CNV Insertion17803354
nsv526653CNV Gain19592680
dgv2469e1CNV Complex17122850
nsv7457OTHER Inversion18451855

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 300446    OMIM disorders: --

8 diseases for RHOXF1:    
About MalaCards
endometrial adenocarcinoma    acute lymphocytic leukemia    bladder carcinoma    ataxia
adenocarcinoma    melanoma    leukemia    prostatitis


RHOXF1 for disorders           About GeneDecksing


Export disorders for RHOXF1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for RHOXF1 gene, integrated from 10 sources (see all 13):
(articles sorted by number of sources associating them with RHOXF1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. OTEX, an androgen-regulated human member of the paired-like class of homeobox genes. (PubMed id 11980563)1, 2, 3, 9 Geserick C.... Haendler B. (Biochem. J. 2002)
  2. Two novel human X-linked homeobox genes, hPEPP1 and hPEPP2, selectively expressed in the testis. (PubMed id 12490318)1, 2, 3 Wayne C.M.... Wilkinson M.F. (Gene 2002)
  3. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (Nature 2005)
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  5. Toward an understanding of the protein interaction network of the human liver. (PubMed id 21988832)1 Wang J....Yang X. (Mol. Syst. Biol. 2011)
  6. Homeobox gene Rhox5 is regulated by epigenetic mechanisms in cancer and stem cells and promotes cancer growth. (PubMed id 21609483)1 Li Q....Guo Z.S. (Mol. Cancer 2011)
  7. An atlas of combinatorial transcriptional regulation in mouse and man. (PubMed id 20211142)1 Ravasi T....Hayashizaki Y. (Cell 2010)
  8. Three epigenetic drugs up-regulate homeobox gene Rhox5 in cancer cells through overlapping and distinct molecular mechanisms. (PubMed id 19679824)1 Li Q....Guo Z.S. (Mol. Pharmacol. 2009)
  9. A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. (PubMed id 16713569)1 Lim J.... Zoghbi H.Y. (Cell 2006)
  10. Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (Nature 2005)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 158800 HGNC: 29993 AceView: OTEX Ensembl:ENSG00000101883 euGenes: HUgn158800
ECgene: RHOXF1 H-InvDB: RHOXF1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for RHOXF1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for RHOXF1 gene:
Search GeneIP for patents involving RHOXF1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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