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RHOT1 Gene

protein-coding   GIFtS: 54

GC17P027493
ras homolog gene family, member T1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: ARHT1)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
ARHT1 2, 3
EC 3.6.5.- 3
FLJ11040 1, 2
FLJ12633 2
MIRO-1 1, 2, 3
hMiro-1 3
Descriptions
Rac-GTP-binding protein-like protein 3
Ras homolog gene family member T1 3
mitochondrial Rho 1 2
rac-GTP binding protein-like protein 2
ras homolog gene family, member T1 2
External Ids
HGNC: 211681
Entrez Gene: 552882
UniProtKB: Q8IXI23
Ensembl: ENSG000001268587
Search outside databases for aliases for RHOT1 gene

Previous GC identifer: GC17P030616

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: MIRO1_HUMAN, Q8IXI2
Function: Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control
of anterograde transport of mitochondria and their subcellular distribution

Gene Wiki entry for RHOT1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the RHOT1 gene  

Entrez Gene cytogenetic band: 17q11.2   Ensembl cytogenetic band:  17q11.2   HGNC cytogenetic band: 17q11.2-q12

RHOT1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P027493:     (about GC identifiers)

Start:
27,493,586 bp from pter
End:
27,576,859 bp from pter
Size:
83,274 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000017.9  NT_010799.14  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: MIRO1_HUMAN, Q8IXI2 (See protein sequence)
Recommended Name: Mitochondrial Rho GTPase 1  
Size: 618 amino acids; 70784 Da
Subunit: Interacts with the kinesin-binding proteins TRAK1/OIP106 and TRAK2/GRIF1, forming a link
between mitochondria and the trafficking apparatus of the microtubules
Subcellular location: Mitochondrion outer membrane; Single-pass type IV membrane protein (Probable)
Secondary accessions: A4FVB6 A6NFV0 B4DG48 Q6NUR3 Q6P9F8 Q6PJG1 Q6YMW8 Q86UB0 Q8IW28 Q8IXJ7 Q9H067
Q9H9N8 Q9NUZ2
Alternative splicing: 6 isoforms:  Q8IXI2-1   Q8IXI2-2   Q8IXI2-3   Q8IXI2-4   Q8IXI2-5   Q8IXI2-6   

REFSEQ proteins (3 alternative transcripts): 
NP_001028738.1  NP_001028740.1  NP_060777.3  


ENSEMBL proteins: 
ENSP00000334724 ENSP00000378184 ENSP00000346215 ENSP00000351132 ENSP00000367870 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (Rhot1)
Human Recombinant Proteins from Abnova (RHOT1)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0005622 intracellular IEA--
GO:0005739 mitochondrion IEA--
GO:0005741 mitochondrial outer membrane IEA--
GO:0016020 membrane IEA--
GO:0016021 integral to membrane IEA--
About this table

Antibodies for RHOT1: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for RHOT1
Browse R&D Systems for Antibodies
Antibodies from Abcam (Rhot1), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (RHOT1)
Novus Biologicals Antibodies for RHOT1

Assays for RHOT1: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

5/9 InterPro domains/families (see all 9 ):
 IPR018247 EF_HAND_1
 IPR011992 EF-Hand_type
 IPR013566 EF_hand_assoc_1
 IPR002048 EF_hand_Ca_bd
 IPR013567 EF_hand_assoc_2


   GeneDecks  RHOT1 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry Q8IXI2

ProtoNet protein and cluster: Q8IXI2

4 Blocks protein families:
IPB003577 Ras small GTPase
IPB003578 Ras small GTPase
IPB013567 EF hand associated
IPB013684 Miro-like


UniProtKB/Swiss-Prot: MIRO1_HUMAN, Q8IXI2
Similarity: Belongs to the mitochondrial Rho GTPase family
Similarity: Contains 2 EF-hand domains
Similarity: Contains 2 Miro domains

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (RHOT1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (RHOT1)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4): NM_001033566

              Applied Biosystems Silencer® siRNAs for RHOT1

              Sigma-Aldrich siRNA for RHOT1  
                     Sigma-Aldrich shRNA for RHOT1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Browse Clone Ranger at Invitrogen for clones
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001033566
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001033566
                                 untagged cDNA clones in CMV expression vector (see all 5): NM_001033566 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_001033568

UniProtKB/Swiss-Prot: MIRO1_HUMAN, Q8IXI2
Function: Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control
of anterograde transport of mitochondria and their subcellular distribution
Enzyme Number (IUBMB): EC 3.6.5.- 

5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0000166 nucleotide binding IEA--
GO:0003674 molecular_function ND--
GO:0005509 calcium ion binding IEA--
GO:0005515 protein binding IPI16630562
GO:0005525 GTP binding IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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5/11 Sigma-Aldrich "Your Favorite Gene" Pathways for  RHOT1  (Your Favorite Gene powered by Ingenuity) (see all 11
 IL-8 Signaling
 Germ Cell-Sertoli Cell Junction Signaling
 Regulation of Actin-based Motility by Rho
 Thrombin Signaling
 Cholecystokinin/Gastrin-mediated Signaling

   GeneDecks  RHOT1 for the pathways selected above  
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5/127 Interacting proteins for RHOT1 (ENSP000003511323 Q8IXI21) via UniProtKB, MINT, and/or STRING (see all 127 )
InteractantInteraction Details
GeneCardExternal ID(s)
TRAK1Q9UPV91STRING (score=.866) EBI-1396430, EBI-1105048
KIF5CO602821EBI-1396430, EBI-717170
Kif5c Kif5c (xeno)P565361EBI-1396430, EBI-994504
Trak2 Trak2 (xeno)Q8R2H71EBI-1396430, EBI-1396483
RHOBTB1ENSP000003505953STRING (score=.977)
About this table

4 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006915 apoptosis IMP12482879
GO:0007264 small GTPase mediated signal transduction IEA--
GO:0019725 cellular homeostasis IMP12482879
GO:0047497 mitochondrion transport along microtubule IMP16630562
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Enzo Life Sciences drugs & compounds for RHOT1
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for RHOT1

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (RHOT1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (RHOT1)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4): NM_001033566

              Sigma-Aldrich siRNA for RHOT1  
                     Sigma-Aldrich shRNA for RHOT1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_001033566  NM_001033568  NM_018307  

REFSEQ mRNAs for RHOT1 gene (3 alternative transcripts): 

NM_001033566.1   NM_001033568.1   NM_018307.3   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_001033566  NM_001033568  NM_018307  

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001033566
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001033566
                                 untagged cDNA clones in CMV expression vector (see all 5): NM_001033566 

Additional cDNA sequence: 

AJ496730.1 AJ517412.1 AK001902.1 AK022695.1 AK294407.1 AL117543.1 AL136929.1 AY094972.1 
BC015698.2 BC029029.1 BC041114.1 BC051818.1 BC060781.1 BC092401.1 BC110895.1 BC125104.1 
BC125105.1 

20 DOTS entries:

DT.87016523  DT.100777598  DT.92439129  DT.100777602  DT.97795281  DT.100777603  DT.100686976  DT.100777600 
DT.111227  DT.120955652  DT.95169554  DT.92439132  DT.100035483  DT.120955513  DT.40209185  DT.92439135 
DT.95169551  DT.95359655  DT.99978228  DT.97845014 

24/245 AceView cDNA sequences (see all 245 ):

AK022695 BF111930 AY094972 AI199847 BF589168 AI003641 BM069542 BC015698 
AA280974 AI453068 BE220856 F04328 AI073884 AK001902 BC041114 AI436247 
F03470 AI052515 BM760793 AJ517412 AL527595 AI364258 AA453078 BM661631 

highest scoring ESTs for RHOT1:

AA011443 AA011444 AA199845 AA251094 AA280974 AA452910 AA453078 AA506048 AA682515 AA718935 

Unigene Cluster for RHOT1:

Ras homolog gene family, member T1
Hs.655325  [show with all ESTs]
Unigene Representative Sequence: NM_001033568


GeneLoc Exon Structure

5/9 Alternative Splicing Database (ASD) splice patterns (SP) for RHOT1 (see all 9 )

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13 ^ 14a · 14b · 14c ^ 15 ^ 16a · 16b ^ 17 ^ 18a ·
SP1:                                                                                                                                -                           
SP2:                                                                                                                                -                 -     -   
SP3:                                                                                                                                -                 -         
SP4:                                                                                                                                                            
SP5:                                                                                                                                -                 -         

ExUns: 18b ^ 19a · 19b · 19c · 19d · 19e
SP1:                                    
SP2:  -                                 
SP3:                                    
SP4:                                    
SP5:                                    

About this scheme

ECgene alternative splicing isoforms for RHOT1

5 Ensembl transcripts including schematic representations:
ENST00000333942  ENST00000394692  ENST00000354266  ENST00000358365  ENST00000378607  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

RHOT1 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for RHOT1

1 / 2 / 3

5 probe-sets matching RHOT1 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

91428_at2, 3 U95-E 1 1.00 1.00 1.00 1.00 AI949652 0.80 1.00 0.91 1

218323_at2, 3 U133-A 1 1.00 1.00 -- -- NM_018307 0.60 1.00 0.82 1

222148_s_at2, 3 U133-A 1 1.00 1.00 -- -- BF688108 0.80 1.00 0.91 1

218323_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

222148_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
About this table
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: ATAAACCTAT

SOURCE GeneReport for Unigene cluster: Hs.655325

UniProtKB/Swiss-Prot: MIRO1_HUMAN, Q8IXI2
Tissue specificity: Ubiquitously expressed. Expressed at high level in heart and skeletal muscle

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for RHOT1 gene from 5/7 species (see all 7 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
RHOT11   -- ras homolog gene family, member T1 95.09(n)
98.71(a)
480613  XM_862873.1  XP_867966.1 
cow
(Bos taurus)
RHOT11   -- ras homolog gene family, member T1 94.82(n)
98.87(a)
511257  NM_001046082.1  NP_001039547.1 
mouse
(Mus musculus)
Rhot11, 5 11 (47.26 cM)5
ras homolog gene family, member T11, 5 92.29(n)1
97.9(a)1
590401  NM_021536.61  NP_067511.41 
 AA4152935  AF2445425  (see all 37)
chicken
(Gallus gallus)
RHOT11   -- ras homolog gene family, member T1 84.79(n)
94.01(a)
417410  NM_001006208.1  NP_001006208.1 
zebrafish
(Danio rerio)
Dr.66392   -- Danio rerio mRNA similar to RIKEN cDNA 2210403N23 gene more 76.79(n)  BC044431.1 
About this table        Species with no ortholog for RHOT1

ENSEMBL Gene Tree for RHOT1
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for RHOT1 gene
RHOT22  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/507 NCBI SNPs in RHOT1 are shown (see all 507 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 121)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 17 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs72088381,2
A,C,F,H27492679(+) GTTGGT/CATTAC 3 -- ng514Minor allele frequency- C:0.29EU EA WA 420
--
rs169672031,2
C,F,H27576723(+) TATATC/TAGGCT 3 -- ut31 ese311Minor allele frequency- T:0.02NA EU EA WA 980
--
rs80791251,2
A,C27492835(+) CACGCA/GTATGT 3 -- ng510--------
rs72074711,2
H27576130(+) TTCAGG/ACAAGA 3 -- ut31 ese34Minor allele frequency- A:0.00EU EA WA 418
rs129426241,2
H27491808(+) GAGATG/TAAAGC 3 -- ng514Minor allele frequency- T:0.00EU EA WA 418
rs169671641,2
C,F,H27558083(+) GCTGAA/GATCAT 3 E/E syn17Minor allele frequency- G:0.32NA EU EA WA 562
rs20363761,2
A,C,F,H,O27558424(-) ACAGCC/TGGGAA 3 -- int112Minor allele frequency- N:0.00EA NA EU WA 1048
rs20442061,2
A,C,F,H,O27552682(+) TCTTAT/CGGGAA 3 -- int17Minor allele frequency- C:0.33EU EA WA NA 554
rs80691671,2
A,C,F,H27499544(+) TGTTCG/ATACAG 3 -- int14Minor allele frequency- A:0.01EU EA WA 414
rs99136381,2
A,C,F,H27512054(+) ggacaG/Aaggca 3 -- int14Minor allele frequency- A:0.34EU EA WA 412
About this table

HapMap Linkage Disequilibrium images for RHOT1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

  --

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/15 PubMed articles for RHOT1 gene (see all 15 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 55288 HGNC: 21168 AceView: RHOT1 Ensembl:ENSG00000126858 euGenes: HUgn55288
ECgene: RHOT1 H-InvDB: RHOT1
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
ATLAS Chromosomes in Cancer entry for RHOT1 Genetics and Cytogenetics in Oncology and Haematology
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for RHOT1:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
  Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for RHOT1-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for RHOT1 Antibodies for RHOT1
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for RHOT1 Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Recombinant & Natural Proteins  

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(Rhot1)
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 Search OriGene for RHOT1
 Search Tocris compounds for RHOT1




 Drugs for RHOT1
 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for RHOT1

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