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Aliases & Descriptions for RHOT1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ARHT1 2 , 3 EC 3.6.5.- 3 FLJ11040 1 , 2 FLJ12633 2 MIRO-1 1 , 2 , 3 hMiro-1 3
Descriptions Rac-GTP-binding protein-like protein 3 Ras homolog gene family member T1 3 mitochondrial Rho 1 2 rac-GTP binding protein-like protein 2 ras homolog gene family, member T1 2
Search outside databases for aliases for RHOT1 genePrevious GC identifer: GC17P030616
Summaries for RHOT1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: MIRO1_HUMAN, Q8IXI2 Function : Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in controlof anterograde transport of mitochondria and their subcellular distribution
Gene Wiki entry for RHOT1
Genomic Location for RHOT1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the RHOT1 gene Entrez Gene cytogenetic band: 17q11.2 Ensembl cytogenetic band: 17q11.2 HGNC cytogenetic band: 17q11.2-q12 RHOT1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P027493:
(about GC identifiers )
Start:
27,493,586 bp from pter
End:
27,576,859 bp from pter
Size:
83,274 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_010799.14 Proteins for RHOT1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: MIRO1_HUMAN, Q8IXI2 (See
protein sequence )Recommended Name: Mitochondrial Rho GTPase 1 Size : 618 amino acids; 70784 Da
Subunit : Interacts with the kinesin-binding proteins TRAK1/OIP106 and TRAK2/GRIF1, forming a linkbetween mitochondria and the trafficking apparatus of the microtubules
Subcellular location : Mitochondrion outer membrane; Single-pass type IV membrane protein (Probable)
Secondary accessions : A4FVB6 A6NFV0 B4DG48 Q6NUR3 Q6P9F8 Q6PJG1 Q6YMW8 Q86UB0 Q8IW28 Q8IXJ7 Q9H067Q9H9N8 Q9NUZ2 Alternative splicing : 6 isoforms : Q8IXI2-1 Q8IXI2-2 Q8IXI2-3 Q8IXI2-4 Q8IXI2-5 Q8IXI2-6
REFSEQ proteins (3 alternative transcripts):
NP_001028738.1 NP_001028740.1 NP_060777.3 ENSEMBL proteins: ENSP00000334724 ENSP00000378184 ENSP00000346215 ENSP00000351132 ENSP00000367870 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for RHOT1: Assays for RHOT1:
Protein
Domains/ Families for RHOT1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q8IXI2 ProtoNet protein and cluster: Q8IXI2
4 Blocks protein families : IPB003577 Ras small GTPase IPB003578 Ras small GTPase IPB013567 EF hand associated IPB013684 Miro-like UniProtKB/Swiss-Prot: MIRO1_HUMAN, Q8IXI2 Similarity : Belongs to the mitochondrial Rho GTPase familySimilarity : Contains 2 EF-hand domainsSimilarity : Contains 2 Miro domains
Gene Function for RHOT1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001033566 Applied Biosystems Silencer ® siRNAs for RHOT1 Sigma-Aldrich siRNA for RHOT1 Sigma-Aldrich shRNA for RHOT1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001033566                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001033566                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_001033566  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001033568 UniProtKB/Swiss-Prot: MIRO1_HUMAN, Q8IXI2 Function : Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in controlof anterograde transport of mitochondria and their subcellular distribution Enzyme Number (IUBMB): EC 3.6.5.-
5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
About this table
Pathways & Interactions for RHOT1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/11 Sigma-Aldrich "Your Favorite Gene" Pathways for RHOT1 (Your Favorite Gene powered by Ingenuity) (see all 11
) 5/127 Interacting proteins for RHOT1 (ENSP00000351132 3 Q8IXI2 1 ) via UniProtKB, MINT, and/or STRING (see all 127
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for RHOT1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for RHOT1
Browse Tocris compounds for RHOT1
Transcripts for RHOT1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001033566 Sigma-Aldrich siRNA for RHOT1 Sigma-Aldrich shRNA for RHOT1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001033566 NM_001033568 NM_018307
REFSEQ mRNAs for RHOT1 gene (3 alternative transcripts): NM_001033566.1 NM_001033568.1 NM_018307.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001033566 NM_001033568 NM_018307
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001033566                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001033566                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_001033566  
Additional cDNA sequence: AJ496730.1 AJ517412.1 AK001902.1 AK022695.1 AK294407.1 AL117543.1 AL136929.1 AY094972.1 BC015698.2 BC029029.1 BC041114.1 BC051818.1 BC060781.1 BC092401.1 BC110895.1 BC125104.1 BC125105.1
20 DOTS entries : DT.87016523 DT.100777598 DT.92439129 DT.100777602 DT.97795281 DT.100777603 DT.100686976 DT.100777600 DT.111227 DT.120955652 DT.95169554 DT.92439132 DT.100035483 DT.120955513 DT.40209185 DT.92439135 DT.95169551 DT.95359655 DT.99978228 DT.97845014
24/245 AceView cDNA sequences (see all 245
):AK022695 BF111930 AY094972 AI199847 BF589168 AI003641 BM069542 BC015698 AA280974 AI453068 BE220856 F04328 AI073884 AK001902 BC041114 AI436247 F03470 AI052515 BM760793 AJ517412 AL527595 AI364258 AA453078 BM661631
highest scoring ESTs for RHOT1 :AA011443 AA011444 AA199845 AA251094 AA280974 AA452910 AA453078 AA506048 AA682515 AA718935
Unigene Cluster for RHOT1: Ras homolog gene family, member T1 Hs.655325 [show with all ESTs ] Unigene Representative Sequence: NM_001033568 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for RHOT1 (see all 9
) ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13 ^ 14a · 14b · 14c ^ 15 ^ 16a · 16b ^ 17 ^ 18a · SP1 :                                           -           SP2 :                                           -       -   -   SP3 :                                           -       -     SP4 :                                                     SP5 :                                           -       -    
ExUns: 18b ^ 19a · 19b · 19c · 19d · 19e SP1 :             SP2 : -             SP3 :             SP4 :             SP5 :            
About this scheme ECgene alternative splicing isoforms for RHOT1 5 Ensembl transcripts including schematic representations : ENST00000333942
ENST00000394692
ENST00000354266
ENST00000358365
ENST00000378607
Expression for RHOT1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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RHOT1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for RHOT1 1 / 2 / 3
5 probe-sets matching RHOT1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATAAACCTATSOURCE GeneReport for Unigene cluster: Hs.655325 UniProtKB/Swiss-Prot: MIRO1_HUMAN, Q8IXI2 Tissue specificity : Ubiquitously expressed. Expressed at high level in heart and skeletal muscle
Orthologs for RHOT1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for RHOT1 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for RHOT1 ENSEMBL Gene Tree for RHOT1 Paralogs for RHOT1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for RHOT1 gene RHOT2 2
SNPs/Variants for RHOT1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for RHOT1 (up to first 250kb)
Disorders & Mutations for RHOT1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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Medical News for RHOT1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for RHOT1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/15 PubMed articles for RHOT1 gene (see all 15
): Atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. (PubMed id 12482879) 2, 3, 4 Fransson A.... Aspenstroem P. (2003) The atypical Rho GTPases Miro-1 and Miro-2 have essential roles in mitochondrial trafficking. (PubMed id 16630562) 3, 4 Fransson S.... Aspenstroem P. (2006) Rho GTPases have diverse effects on the organization of the actin filament system. (PubMed id 14521508) 3, 4 Aspenstroem P.... Saras J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166) 3, 4 Wiemann S.... Poustka A. (2001) GTPase dependent recruitment of Grif-1 by Miro1 regulates mitochondrial trafficking in hippocampal neurons. (PubMed id 19103291) 3 MacAskill A.F....Kittler J.T. (2009) Bidirectional Ca2+-dependent control of mitochondrial dynamics by the Miro GTPase. (PubMed id 19098100) 3 Saotome M....HajnA^czky G. (2008) The LIFEdb database in 2006. (PubMed id 16381901) 3 Mehrle A....Wiemann S. (2006) DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PubMed id 16625196) 4 Zody M.C.... Nusbaum C. (2006)
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Genome Databases showing RHOT1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing RHOT1
(According to HUGE )
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Specialized Databases showing RHOT1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for RHOT1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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