Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RHOA-IT1 Gene

Subcategory (RNA class) for RHOA-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RHOA-IT1 Gene

  • RHOA Intronic Transcript 1 2 3 5
  • RHOA Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for RHOA-IT1 Gene

Previous GeneCards Identifiers for RHOA-IT1 Gene

  • GC00U933018

Summaries for RHOA-IT1 Gene

GeneCards Summary for RHOA-IT1 Gene

RHOA-IT1 (RHOA Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RHOA-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RHOA-IT1 Gene

Genomics for RHOA-IT1 Gene

GeneHancer (GH) Regulatory Elements for RHOA-IT1 Gene

Promoters and enhancers for RHOA-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I050234 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.2 -878.3 -878250 21.2 HDGF FOXA2 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF213 ZNF207 GNAI2 HYAL3 RBM5 SEMA3F-AS1 RBM6 HYAL1 CYB561D2 RHOA-IT1 AMT HEMK1
GH03I048551 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13.6 +807.7 807736 15.4 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B PFKFB4 UCN2 TMA7 NME6 QRICH1 ATRIP USP19 ZNF589 WDR6 TMEM89
GH03I049356 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 15.9 +8.7 8719 4.2 HDGF SMAD1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 GC03M049359 GPX1 GC03M049358 AMT QRICH1 RBM5 RBM6 SEMA3F-AS1 RHOA-IT1 USP19
GH03I050332 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13.6 -970.7 -970666 9.4 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 POLR2B ZNF766 RASSF1 RASSF1-AS1 HYAL3 CYB561D2 RBM6 SEMA3F-AS1 NICN1 RBM5 RHOA-IT1 TMEM115
GH03I050319 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14.6 -955.5 -955547 5.2 HDGF CLOCK ARNT ZFP64 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 HYAL2 RBM6 RBM5 AMT SEMA3F-AS1 TMEM115 HYAL3 RHOA-IT1 RASSF1 HEMK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RHOA-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RHOA-IT1 Gene

Genomic Locations for RHOA-IT1 Gene
chr3:49,365,145-49,367,006
(GRCh38/hg38)
Size:
1,862 bases
Orientation:
Minus strand
chr3:49,402,578-49,404,439
(GRCh37/hg19)

Genomic View for RHOA-IT1 Gene

Genes around RHOA-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RHOA-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RHOA-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for RHOA-IT1 Gene

Proteins for RHOA-IT1 Gene

Post-translational modifications for RHOA-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RHOA-IT1 Gene

Domains & Families for RHOA-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RHOA-IT1 Gene

Function for RHOA-IT1 Gene

Phenotypes From GWAS Catalog for RHOA-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RHOA-IT1 Gene

Localization for RHOA-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RHOA-IT1 Gene

Pathways & Interactions for RHOA-IT1 Gene

SuperPathways for RHOA-IT1 Gene

No Data Available

Interacting Proteins for RHOA-IT1 Gene

Gene Ontology (GO) - Biological Process for RHOA-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RHOA-IT1 Gene

Drugs & Compounds for RHOA-IT1 Gene

No Compound Related Data Available

Transcripts for RHOA-IT1 Gene

mRNA/cDNA for RHOA-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RHOA-IT1 Gene

No ASD Table

Relevant External Links for RHOA-IT1 Gene

GeneLoc Exon Structure for
RHOA-IT1
ECgene alternative splicing isoforms for
RHOA-IT1

Expression for RHOA-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RHOA-IT1 Gene

genes like me logo Genes that share expression patterns with RHOA-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RHOA-IT1 Gene

Orthologs for RHOA-IT1 Gene

Evolution for RHOA-IT1 Gene

ENSEMBL:
Gene Tree for RHOA-IT1 (if available)
TreeFam:
Gene Tree for RHOA-IT1 (if available)

No data available for Orthologs for RHOA-IT1 Gene

Paralogs for RHOA-IT1 Gene

No data available for Paralogs for RHOA-IT1 Gene

Variants for RHOA-IT1 Gene

Additional Variant Information for RHOA-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RHOA-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RHOA-IT1 Gene

Disorders for RHOA-IT1 Gene

No disorders were found for RHOA-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RHOA-IT1 Gene

Publications for RHOA-IT1 Gene

No publications were found for RHOA-IT1 Gene.

Products for RHOA-IT1 Gene

Sources for RHOA-IT1 Gene

Content
Loading form....