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Aliases for RHBDL1 Gene

Aliases for RHBDL1 Gene

  • Rhomboid, Veinlet-Like 1 (Drosophila) 2 3
  • RHBDL 3 4 6
  • RRP 3 4 6
  • Rhomboid-Like Protein 1 3 4
  • EC 3.4.21.105 4 64
  • Rhomboid (Veinlet, Drosophila)-Like 2
  • Rhomboid, Drosophila, Homolog Of 3
  • Rhomboid-Related Protein 1 3

External Ids for RHBDL1 Gene

Previous Symbols for RHBDL1 Gene

  • RHBDL

Summaries for RHBDL1 Gene

Entrez Gene Summary for RHBDL1 Gene

  • This gene encodes a protein similar to Rhomboid in Drosophila which is involved in signalling in the Spitz/epidermal growth factor receptor/mitogen-activated protein kinase pathway. The Rhomboid family of proteins consists of intramembrane serine proteases containing several transmembrane domains. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]

GeneCards Summary for RHBDL1 Gene

RHBDL1 (Rhomboid, Veinlet-Like 1 (Drosophila)) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding and serine-type endopeptidase activity. An important paralog of this gene is RHBDL3.

UniProtKB/Swiss-Prot for RHBDL1 Gene

  • May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RHBDL1 Gene

Genomics for RHBDL1 Gene

Genomic Location for RHBDL1 Gene

Start:
675,666 bp from pter
End:
678,268 bp from pter
Size:
2,603 bases
Orientation:
Plus strand

Genomic View for RHBDL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RHBDL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RHBDL1 Gene

Regulatory Elements for RHBDL1 Gene

Transcription factor binding sites by QIAGEN in the RHBDL1 gene promoter:

Proteins for RHBDL1 Gene

  • Protein details for RHBDL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O75783-RHBL1_HUMAN
    Recommended name:
    Rhomboid-related protein 1
    Protein Accession:
    O75783
    Secondary Accessions:
    • A2IDC0
    • A2IDC1
    • Q0VAX4
    • Q9NQ85

    Protein attributes for RHBDL1 Gene

    Size:
    438 amino acids
    Molecular mass:
    48314 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for RHBDL1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RHBDL1 Gene

Proteomics data for RHBDL1 Gene at MOPED

Selected DME Specific Peptides for RHBDL1 Gene

Post-translational modifications for RHBDL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RHBDL1 Gene

Domains for RHBDL1 Gene

Protein Domains for RHBDL1 Gene

UniProtKB/Swiss-Prot:

RHBL1_HUMAN
Family:
  • Belongs to the peptidase S54 family.:
    • O75783
genes like me logo Genes that share domains with RHBDL1: view

No data available for Gene Families for RHBDL1 Gene

Function for RHBDL1 Gene

Molecular function for RHBDL1 Gene

UniProtKB/Swiss-Prot CatalyticActivity: Cleaves type-1 transmembrane domains using a catalytic dyad composed of serine and histidine that are contributed by different transmembrane domains
UniProtKB/Swiss-Prot Function: May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors.

Enzyme Numbers (IUBMB) for RHBDL1 Gene

Gene Ontology (GO) - Molecular Function for RHBDL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004252 serine-type endopeptidase activity IEA --
GO:0005509 calcium ion binding --
genes like me logo Genes that share ontologies with RHBDL1: view

Phenotypes for RHBDL1 Gene

GenomeRNAi human phenotypes for RHBDL1:
genes like me logo Genes that share phenotypes with RHBDL1: view

No data available for Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RHBDL1 Gene

Localization for RHBDL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RHBDL1 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RHBDL1 Gene COMPARTMENTS Subcellular localization image for RHBDL1 gene
Compartment Confidence
plasma membrane 4
mitochondrion 2
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for RHBDL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane TAS 9662444
GO:0016020 membrane TAS 9662444
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with RHBDL1: view

Pathways for RHBDL1 Gene

SuperPathways for RHBDL1 Gene

No Data Available

Interacting Proteins for RHBDL1 Gene

Gene Ontology (GO) - Biological Process for RHBDL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis IEA --
GO:0007165 signal transduction TAS 9662444
genes like me logo Genes that share ontologies with RHBDL1: view

No data available for Pathways by source for RHBDL1 Gene

Transcripts for RHBDL1 Gene

Unigene Clusters for RHBDL1 Gene

Rhomboid, veinlet-like 1 (Drosophila):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RHBDL1 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b
SP1: - -
SP2: - - -
SP3: -
SP4:

Relevant External Links for RHBDL1 Gene

GeneLoc Exon Structure for
RHBDL1
ECgene alternative splicing isoforms for
RHBDL1

Expression for RHBDL1 Gene

mRNA expression in normal human tissues for RHBDL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RHBDL1 Gene

This gene is overexpressed in Brain - Cerebellum (6.9), Brain - Cerebellar Hemisphere (6.1), and Brain - Cortex (4.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for RHBDL1 Gene

SOURCE GeneReport for Unigene cluster for RHBDL1 Gene Hs.137572

mRNA Expression by UniProt/SwissProt for RHBDL1 Gene

O75783-RHBL1_HUMAN
Tissue specificity: Detected in heart, brain, skeletal muscle and kidney
genes like me logo Genes that share expressions with RHBDL1: view

Orthologs for RHBDL1 Gene

This gene was present in the common ancestor of animals.

Orthologs for RHBDL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RHBDL1 36
  • 99.63 (n)
  • 99.45 (a)
RHBDL1 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RHBDL1 36
  • 92.05 (n)
  • 98.37 (a)
RHBDL1 37
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RHBDL1 36
  • 91.37 (n)
  • 97.25 (a)
RHBDL1 37
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rhbdl1 36
  • 90.35 (n)
  • 97.59 (a)
Rhbdl1 16
Rhbdl1 37
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RHBDL1 37
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RHBDL1 37
  • 93 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rhbdl1 36
  • 90.26 (n)
  • 97.59 (a)
chicken
(Gallus gallus)
Aves RHBDL1 36
  • 87.46 (n)
  • 93.28 (a)
RHBDL1 37
  • 88 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RHBDL1 37
  • 90 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii rhbdl1 36
  • 76.16 (n)
  • 79.89 (a)
rhbdl1 37
  • 78 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta rho 37
  • 29 (a)
ManyToMany
rho-4 37
  • 26 (a)
ManyToMany
ru 37
  • 31 (a)
ManyToMany
stet 37
  • 25 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 40 (a)
ManyToMany
Species with no ortholog for RHBDL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RHBDL1 Gene

ENSEMBL:
Gene Tree for RHBDL1 (if available)
TreeFam:
Gene Tree for RHBDL1 (if available)

Paralogs for RHBDL1 Gene

Paralogs for RHBDL1 Gene

Selected SIMAP similar genes for RHBDL1 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with RHBDL1: view

Variants for RHBDL1 Gene

Sequence variations from dbSNP and Humsavar for RHBDL1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs3830140 -- 675,335(-) GCTCC(C/T)CCTCC upstream-variant-2KB
rs8056588 -- 676,189(+) TCAAG(C/T)AGGGT intron-variant, reference, stop-gained
rs11640413 -- 677,873(+) TGGCA(A/G)GCGCG missense, reference
rs12929870 -- 676,686(+) AAGCG(C/T)TCCAG reference, synonymous-codon, intron-variant
rs74002822 -- 674,823(+) AGCCC(C/G)CTGTA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RHBDL1 Gene

Variant ID Type Subtype PubMed ID
esv2422427 CNV Duplication 17116639
nsv904707 CNV Loss 21882294
nsv526903 CNV Loss 19592680
dgv2475n71 CNV Loss 21882294
dgv2479n71 CNV Loss 21882294
nsv471063 CNV Loss 18288195
dgv2485n71 CNV Loss 21882294
nsv904759 CNV Loss 21882294
dgv2487n71 CNV Loss 21882294
nsv516590 CNV Loss 19592680
dgv2488n71 CNV Loss 21882294
nsv904781 CNV Gain 21882294
nsv471065 CNV Gain 18288195
nsv904785 CNV Gain+Loss 21882294
dgv2490n71 CNV Loss 21882294
nsv9321 CNV Gain+Loss 18304495
nsv457310 CNV Loss 19166990
dgv2491n71 CNV Loss 21882294
nsv904796 CNV Loss 21882294
nsv904797 CNV Loss 21882294
dgv2492n71 CNV Loss 21882294
nsv904799 CNV Loss 21882294
nsv827480 CNV Gain 20364138
nsv827481 CNV Gain 20364138
dgv2493n71 CNV Loss 21882294
dgv2494n71 CNV Loss 21882294
nsv904803 CNV Loss 21882294

Relevant External Links for RHBDL1 Gene

HapMap Linkage Disequilibrium report
RHBDL1

Disorders for RHBDL1 Gene

(1) University of Copenhagen DISEASES for RHBDL1 Gene

Relevant External Links for RHBDL1

Genetic Association Database (GAD)
RHBDL1
genes like me logo Genes that share disorders with RHBDL1: view

No data available for UniProtKB/Swiss-Prot for RHBDL1 Gene

Publications for RHBDL1 Gene

  1. Characterization of a mammalian cDNA encoding a protein with high sequence similarity to the Drosophila regulatory protein Rhomboid. (PMID: 9662444) Pascall J.C. … Brown K.D. (FEBS Lett. 1998) 2 3 4 23
  2. Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16. (PMID: 11157797) Daniels R.J. … Higgs D.R. (Hum. Mol. Genet. 2001) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Rhomboid proteins: a role in keratinocyte proliferation and cancer. (PMID: 23263464) Etheridge S.L. … Blaydon D.C. (Cell Tissue Res. 2013) 3
  5. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4

Products for RHBDL1 Gene

Sources for RHBDL1 Gene

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