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Aliases for RGMB-AS1 Gene

Subcategory (RNA class) for RGMB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RGMB-AS1 Gene

  • RGMB Antisense RNA 1 2 3 5
  • CTC-463N11.3 3

External Ids for RGMB-AS1 Gene

Previous GeneCards Identifiers for RGMB-AS1 Gene

  • GC05M098106

Summaries for RGMB-AS1 Gene

GeneCards Summary for RGMB-AS1 Gene

RGMB-AS1 (RGMB Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RGMB-AS1 Gene

Genomics for RGMB-AS1 Gene

Regulatory Elements for RGMB-AS1 Gene

Enhancers for RGMB-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G098767 1.4 ENCODE dbSUPER 33.2 +0.9 927 10.3 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 RGMB-AS1 CHD1 RGMB
GH05G098762 1.1 Ensembl ENCODE dbSUPER 32.7 +10.2 10185 1.6 JUND BCL11A GLIS1 ZNF10 TEAD4 FOS CHD7 RGMB-AS1 RGMB PIR40029
GH05G099019 1.3 Ensembl ENCODE 15.9 -247.4 -247442 3.3 PKNOX1 ATF1 FEZF1 ZNF2 FOS YY2 REST TSHZ1 PPARG ZNF518A RGMB-AS1 CHD1 LINC02062 RGMB GC05P099011 PIR38453 PIR33197
GH05G099032 1.2 Ensembl ENCODE 15.2 -259.9 -259896 2.5 FOXA2 CBX3 RB1 TBL1XR1 ARNT WRNIP1 RAD21 RARA RFX5 YY1 RGMB-AS1 LINC02062 CHD1 RGMB GC05P099011 PIR38453 PIR33197
GH05G098752 0.4 ENCODE 43.1 +20.4 20442 1.8 ETS1 RGMB-AS1 RGMB PIR40029
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RGMB-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RGMB-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000316295 -931 3201 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1

Genomic Location for RGMB-AS1 Gene

Chromosome:
5
Start:
98,769,618 bp from pter
End:
98,773,469 bp from pter
Size:
3,852 bases
Orientation:
Minus strand

Genomic View for RGMB-AS1 Gene

Genes around RGMB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RGMB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RGMB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RGMB-AS1 Gene

Proteins for RGMB-AS1 Gene

Post-translational modifications for RGMB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RGMB-AS1 Gene

Domains & Families for RGMB-AS1 Gene

Gene Families for RGMB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RGMB-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RGMB-AS1 Gene

Function for RGMB-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RGMB-AS1 Gene

Localization for RGMB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RGMB-AS1 Gene

Pathways & Interactions for RGMB-AS1 Gene

SuperPathways for RGMB-AS1 Gene

No Data Available

Interacting Proteins for RGMB-AS1 Gene

Gene Ontology (GO) - Biological Process for RGMB-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RGMB-AS1 Gene

Drugs & Compounds for RGMB-AS1 Gene

No Compound Related Data Available

Transcripts for RGMB-AS1 Gene

mRNA/cDNA for RGMB-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RGMB-AS1 Gene

No ASD Table

Relevant External Links for RGMB-AS1 Gene

GeneLoc Exon Structure for
RGMB-AS1
ECgene alternative splicing isoforms for
RGMB-AS1

Expression for RGMB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RGMB-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RGMB-AS1 Gene

This gene is overexpressed in Testis (x16.6).
genes like me logo Genes that share expression patterns with RGMB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RGMB-AS1 Gene

Orthologs for RGMB-AS1 Gene

Evolution for RGMB-AS1 Gene

ENSEMBL:
Gene Tree for RGMB-AS1 (if available)
TreeFam:
Gene Tree for RGMB-AS1 (if available)

No data available for Orthologs for RGMB-AS1 Gene

Paralogs for RGMB-AS1 Gene

No data available for Paralogs for RGMB-AS1 Gene

Variants for RGMB-AS1 Gene

Sequence variations from dbSNP and Humsavar for RGMB-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000068120 -- 98,774,802(+) GGGAA(A/G)AGCTC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000369323 -- 98,769,700(+) CCGGG(A/G)CTGTT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000975799 -- 98,770,090(+) TGGAG(C/T)GGAGT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001028114 -- 98,770,423(+) CGGCT(C/T)CCAAA intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001328339 -- 98,770,247(+) GGCTG(C/T)GTTTG intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Relevant External Links for RGMB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RGMB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RGMB-AS1 Gene

Disorders for RGMB-AS1 Gene

Relevant External Links for RGMB-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RGMB-AS1

No disorders were found for RGMB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RGMB-AS1 Gene

Publications for RGMB-AS1 Gene

  1. Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer. (PMID: 26055877) Li P. … Zhang G. (Diagn Pathol 2015) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RGMB-AS1 Gene

Sources for RGMB-AS1 Gene

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