Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RGMB-AS1 Gene

Subcategory (RNA class) for RGMB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RGMB-AS1 Gene

  • RGMB Antisense RNA 1 2 3 5
  • CTC-463N11.3 3

External Ids for RGMB-AS1 Gene

Previous GeneCards Identifiers for RGMB-AS1 Gene

  • GC05M098106

Summaries for RGMB-AS1 Gene

GeneCards Summary for RGMB-AS1 Gene

RGMB-AS1 (RGMB Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RGMB-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RGMB-AS1 Gene

Genomics for RGMB-AS1 Gene

GeneHancer (GH) Regulatory Elements for RGMB-AS1 Gene

Promoters and enhancers for RGMB-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I098767 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 583.3 +0.9 927 10.3 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 RGMB-AS1 RGMB CHD1
GH05I098762 Enhancer 0.8 Ensembl ENCODE dbSUPER 32.7 +10.2 10184 1.6 SP1 JUND GLIS1 RGMB-AS1 RGMB PIR40029
GH05I099019 Enhancer 1.2 Ensembl ENCODE 15.9 -247.4 -247441 3.3 PKNOX1 ATF1 FEZF1 ZNF2 ZNF213 ATF7 FOS KLF13 YY2 REST RGMB-AS1 LINC02062 CHD1 RGMB GC05P099011 PIR38453 PIR33197
GH05I098925 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.9 -155.4 -155400 6.5 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 ZNF143 SP3 MEF2D CHD1 LINC02062 LOC100289230 RGMB-AS1 RNU6-402P
GH05I098752 Enhancer 0.4 ENCODE 43.1 +20.4 20441 1.8 GATA3 ETS1 RGMB-AS1 RGMB PIR40029
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RGMB-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RGMB-AS1 Gene

Genomic Locations for RGMB-AS1 Gene
chr5:98,769,618-98,773,469
(GRCh38/hg38)
Size:
3,852 bases
Orientation:
Minus strand
chr5:98,105,322-98,109,173
(GRCh37/hg19)

Genomic View for RGMB-AS1 Gene

Genes around RGMB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RGMB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RGMB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RGMB-AS1 Gene

Proteins for RGMB-AS1 Gene

Post-translational modifications for RGMB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RGMB-AS1 Gene

Domains & Families for RGMB-AS1 Gene

Gene Families for RGMB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RGMB-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RGMB-AS1 Gene

Function for RGMB-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RGMB-AS1 Gene

Localization for RGMB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RGMB-AS1 Gene

Pathways & Interactions for RGMB-AS1 Gene

SuperPathways for RGMB-AS1 Gene

No Data Available

Interacting Proteins for RGMB-AS1 Gene

Gene Ontology (GO) - Biological Process for RGMB-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RGMB-AS1 Gene

Drugs & Compounds for RGMB-AS1 Gene

No Compound Related Data Available

Transcripts for RGMB-AS1 Gene

mRNA/cDNA for RGMB-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RGMB-AS1 Gene

No ASD Table

Relevant External Links for RGMB-AS1 Gene

GeneLoc Exon Structure for
RGMB-AS1
ECgene alternative splicing isoforms for
RGMB-AS1

Expression for RGMB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RGMB-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RGMB-AS1 Gene

This gene is overexpressed in Testis (x16.6).
genes like me logo Genes that share expression patterns with RGMB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RGMB-AS1 Gene

Orthologs for RGMB-AS1 Gene

Evolution for RGMB-AS1 Gene

ENSEMBL:
Gene Tree for RGMB-AS1 (if available)
TreeFam:
Gene Tree for RGMB-AS1 (if available)

No data available for Orthologs for RGMB-AS1 Gene

Paralogs for RGMB-AS1 Gene

No data available for Paralogs for RGMB-AS1 Gene

Variants for RGMB-AS1 Gene

Sequence variations from dbSNP and Humsavar for RGMB-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000068120 -- 98,774,802(-) A/G upstream_transcript_variant
rs1000369323 -- 98,769,700(-) A/G non_coding_transcript_variant
rs1000975799 -- 98,770,090(-) T/C non_coding_transcript_variant
rs1001028114 -- 98,770,423(-) C/T non_coding_transcript_variant
rs1001328339 -- 98,770,247(-) C/T non_coding_transcript_variant

Additional Variant Information for RGMB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RGMB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RGMB-AS1 Gene

Disorders for RGMB-AS1 Gene

Additional Disease Information for RGMB-AS1

No disorders were found for RGMB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RGMB-AS1 Gene

Publications for RGMB-AS1 Gene

  1. Long Noncoding RNA RGMB-AS1 Indicates a Poor Prognosis and Modulates Cell Proliferation, Migration and Invasion in Lung Adenocarcinoma. (PMID: 26950071) Li P … Zhao G (PloS one 2016) 2 3 58
  2. Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer. (PMID: 26055877) Li P … Zhang G (Diagnostic pathology 2015) 2 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RGMB-AS1 Gene

Sources for RGMB-AS1 Gene

Content
Loading form....