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Aliases for RGMB-AS1 Gene

Subcategory (RNA class) for RGMB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RGMB-AS1 Gene

  • RGMB Antisense RNA 1 2 3 5
  • CTC-463N11.3 3

External Ids for RGMB-AS1 Gene

Previous GeneCards Identifiers for RGMB-AS1 Gene

  • GC05M098106

Summaries for RGMB-AS1 Gene

GeneCards Summary for RGMB-AS1 Gene

RGMB-AS1 (RGMB Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RGMB-AS1 Gene

Genomics for RGMB-AS1 Gene

Regulatory Elements for RGMB-AS1 Gene

Enhancers for RGMB-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F098767 1.1 ENCODE 33.3 +0.9 927 10.3 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF143 RGMB-AS1 CHD1 RGMB
GH05F098762 0.8 Ensembl ENCODE 32.7 +10.2 10185 1.6 JUND BCL11A GLIS1 TEAD4 RGMB-AS1 RGMB PIR40029
GH05F099019 1.2 Ensembl ENCODE 15.9 -247.4 -247442 3.3 PKNOX1 ATF1 FEZF1 ZNF2 FOS YY2 REST TSHZ1 PPARG ZNF518A RGMB-AS1 CHD1 LOC100289230 RGMB GC05P099011 PIR38453 PIR33197
GH05F098752 0.4 ENCODE 43.1 +20.4 20442 1.8 ETS1 RGMB-AS1 RGMB PIR40029
GH05F099032 1.1 Ensembl ENCODE 15.2 -260.0 -259990 2.7 CBX3 TBL1XR1 WRNIP1 RAD21 RARA RFX5 YY1 GATA2 SCRT2 ZNF362 RGMB-AS1 CHD1 LOC100289230 RGMB GC05P099011 PIR38453 PIR33197
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RGMB-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RGMB-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001286225 669 9201 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF143

Genomic Location for RGMB-AS1 Gene

Chromosome:
5
Start:
98,769,618 bp from pter
End:
98,773,469 bp from pter
Size:
3,852 bases
Orientation:
Minus strand

Genomic View for RGMB-AS1 Gene

Genes around RGMB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RGMB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RGMB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RGMB-AS1 Gene

Proteins for RGMB-AS1 Gene

Post-translational modifications for RGMB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RGMB-AS1 Gene

Domains & Families for RGMB-AS1 Gene

Gene Families for RGMB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RGMB-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RGMB-AS1 Gene

Function for RGMB-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RGMB-AS1 Gene

Localization for RGMB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RGMB-AS1 Gene

Pathways & Interactions for RGMB-AS1 Gene

SuperPathways for RGMB-AS1 Gene

No Data Available

Interacting Proteins for RGMB-AS1 Gene

Gene Ontology (GO) - Biological Process for RGMB-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RGMB-AS1 Gene

Transcripts for RGMB-AS1 Gene

mRNA/cDNA for RGMB-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RGMB-AS1 Gene

No ASD Table

Relevant External Links for RGMB-AS1 Gene

GeneLoc Exon Structure for
RGMB-AS1
ECgene alternative splicing isoforms for
RGMB-AS1

Expression for RGMB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RGMB-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RGMB-AS1 Gene

This gene is overexpressed in Testis (x16.6).
genes like me logo Genes that share expression patterns with RGMB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RGMB-AS1 Gene

Orthologs for RGMB-AS1 Gene

Evolution for RGMB-AS1 Gene

ENSEMBL:
Gene Tree for RGMB-AS1 (if available)
TreeFam:
Gene Tree for RGMB-AS1 (if available)

No data available for Orthologs for RGMB-AS1 Gene

Paralogs for RGMB-AS1 Gene

No data available for Paralogs for RGMB-AS1 Gene

Variants for RGMB-AS1 Gene

Sequence variations from dbSNP and Humsavar for RGMB-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10078777 -- 98,774,008(+) ggccc(A/G)gaccc upstream-variant-2KB, reference, missense
rs111269054 -- 98,771,132(+) GCCGT(A/G)GTATG intron-variant, nc-transcript-variant
rs112671457 -- 98,772,658(+) ATAAC(C/T)GCTTT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs113114159 -- 98,774,643(+) AGTTG(A/G)GGGTG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs113387200 -- 98,774,383(+) GCCAC(C/T)CACCG intron-variant, upstream-variant-2KB

Relevant External Links for RGMB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RGMB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RGMB-AS1 Gene

Disorders for RGMB-AS1 Gene

Relevant External Links for RGMB-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RGMB-AS1

No disorders were found for RGMB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RGMB-AS1 Gene

Publications for RGMB-AS1 Gene

  1. Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer. (PMID: 26055877) Li P. … Zhang G. (Diagn Pathol 2015) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RGMB-AS1 Gene

Sources for RGMB-AS1 Gene

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