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Set Analyses:

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RGMA Gene

protein-coding GIFtS: 60
GCID: GC15M093586

Repulsive Guidance Molecule Family Member A

(Previous names: RGM domain family, member A)

See related diseases
at

MalaCards

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
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Aliases
Repulsive Guidance Molecule Family Member A¹ ²
RGM Domain Family, Member A¹ ²
RGM² ³
Repulsive Guidance Molecule A²
RGM Domain Family Member A³

External Ids:	HGNC: 30308¹	Entrez Gene: 56963²	Ensembl: ENSG00000182175⁷	OMIM: 607362⁵	UniProtKB: Q96B86³

Export aliases for RGMA gene to outside databases

Previous GC identifers: GC15M091173 GC15M091316 GC15M091387 GC15M069723

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for RGMA Gene:

This gene encodes a member of the repulsive guidance molecule family. The encoded protein is a

glycosylphosphatidylinositol-anchored glycoprotein that functions as an axon guidance protein in the developing

and adult central nervous system. This protein may also function as a tumor suppressor in some cancers. Alternate

splicing results in multiple transcript variants. (provided by RefSeq, Oct 2009)

GeneCards Summary for RGMA Gene:

RGMA (repulsive guidance molecule family member a) is a protein-coding gene. Diseases associated with RGMA include gastric ulcer, and spinal cord injury. An important paralog of this gene is RGMB.

UniProtKB/Swiss-Prot: RGMA_HUMAN, Q96B86

Function: Member of the repulsive guidance molecule (RGM) family that performs several functions in the developing

and adult nervous system. Regulates cephalic neural tube closure, inhibits neurite outgrowth and cortical neuron

branching, and the formation of mature synapses. Binding to its receptor NEO1/neogenin induces activation of

RHOA-ROCK1/Rho-kinase signaling pathway through UNC5B-ARHGEF12/LARG-PTK2/FAK1 cascade, leading to collapse of the

neuronal growth cone and neurite outgrowth inhibition. Furthermore, RGMA binding to NEO1/neogenin leads to HRAS

inactivation by influencing HRAS-PTK2/FAK1-AKT1 pathway. It also functions as a bone morphogenetic protein (BMP)

coreceptor that may signal through SMAD1, SMAD5, and SMAD8

Gene Wiki entry for RGMA Gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:

NC_000015.10 NC_018926.2 NT_010194.18

Regulatory elements:

Regulatory transcription factor binding sites in the RGMA gene promoter:
GR STAT1 AML1a p53 GR-beta STAT1beta Nkx2-5 STAT1alpha Ik-2 GR-alpha
Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): RGMA promoter sequence

Search Chromatin IP Primers for RGMA

Epigenetics:

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RGMA

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q26.1 Ensembl cytogenetic band: 15q26.1 HGNC cytogenetic band: 15q26.1

RGMA Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RGMA gene location

GeneLoc information about chromosome 15 GeneLoc Exon Structure

GeneLoc location for GC15M093586: view genomic region (about GC identifiers)

Start:	93,586,636 bp from pter	End:	93,632,443 bp from pter
Size:	45,808 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: RGMA_HUMAN, Q96B86 (See protein sequence)

Recommended Name: Repulsive guidance molecule A precursor

Size: 450 amino acids; 49347 Da

Subunit: Interacts with NEO1, BMP2 and BMP4 (By similarity)

Secondary accessions: B2RTW1 Q0JV97 Q8NC80 Q9H0E6 Q9NPM3

Alternative splicing: 2 isoforms: Q96B86-1 Q96B86-2 (Incomplete sequence. No experimental confirmation available)

Explore the universe of human proteins at neXtProt for RGMA: NX_Q96B86

Explore proteomics data for RGMA at MOPED

Post-translational modifications:

Glycosylation² at Asn114, Asn159, Asn389

Modification sites at PhosphoSitePlus

See RGMA Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (6 alternative transcripts):

NP_001159755.1 NP_001159758.1 NP_001159759.1 NP_001159760.1 NP_001159761.1 NP_064596.2

ENSEMBL proteins:

ENSP00000330005 ENSP00000440025 ENSP00000451505 ENSP00000452126 ENSP00000452170

ENSP00000456290 ENSP00000455634 ENSP00000451709 ENSP00000452350 ENSP00000442498

ENSP00000404442 ENSP00000442546

Reactome Protein details: Q96B86

RGMA Human Recombinant Protein Products:

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	GenScript Custom Purified and Recombinant Proteins Services for RGMA
	Novus Biologicals RGMA Protein Novus Biologicals RGMA Lysates
	Sino Biological Recombinant Protein for RGMA Sino Biological Cell Lysate for RGMA
	Browse ProSpec Recombinant Proteins
	Cloud-Clone Corp. Proteins for RGMA

RGMA Antibody Products:

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	Novus Biologicals RGMA Antibodies
	Abcam antibodies for RGMA
	Cloud-Clone Corp. Antibodies for RGMA
	Search ThermoFisher Antibodies for RGMA
	LSBio Antibodies in human, mouse, rat for RGMA

RGMA Assay Products:

	Browse Kits and Assays available from EMD Millipore
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	GenScript Custom Assay Services for RGMA
	Browse Enzo Life Sciences for kits & assays
	Cloud-Clone Corp. ELISAs for RGMA Cloud-Clone Corp. CLIAs for RGMA

(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro protein domains:

IPR009496 RGM_C

IPR010536 RGM_N

Graphical View of Domain Structure for InterPro Entry Q96B86

ProtoNet protein and cluster: Q96B86

1 Blocks protein domain: IPB009496 Repulsive guidance molecule

UniProtKB/Swiss-Prot: RGMA_HUMAN, Q96B86

Similarity: Belongs to the repulsive guidance molecule (RGM) family

RGMA for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

UniProtKB/Swiss-Prot Summary: RGMA_HUMAN, Q96B86

Function: Member of the repulsive guidance molecule (RGM) family that performs several functions in the developing

and adult nervous system. Regulates cephalic neural tube closure, inhibits neurite outgrowth and cortical neuron

branching, and the formation of mature synapses. Binding to its receptor NEO1/neogenin induces activation of

RHOA-ROCK1/Rho-kinase signaling pathway through UNC5B-ARHGEF12/LARG-PTK2/FAK1 cascade, leading to collapse of the

neuronal growth cone and neurite outgrowth inhibition. Furthermore, RGMA binding to NEO1/neogenin leads to HRAS

inactivation by influencing HRAS-PTK2/FAK1-AKT1 pathway. It also functions as a bone morphogenetic protein (BMP)

coreceptor that may signal through SMAD1, SMAD5, and SMAD8

Gene Ontology (GO): 2 molecular function terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005515	protein binding	--	--
GO:0015026	coreceptor activity	--	--

RGMA for ontologies About GeneDecksing

Phenotypes:
5 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Rgma):

craniofacial

embryogenesis

mortality/aging

nervous system

skeleton

RGMA for phenotypes About GeneDecksing

Animal Models:
MGI mouse knock-out Rgma^tm1Arbr for RGMA

inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for RGMA

inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for RGMA

genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for RGMA

genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for RGMA

miRNA Products:		miRTarBase miRNAs that target RGMA: hsa-mir-148b-3p (MIRT019379), hsa-mir-615-3p (MIRT040467)

		Block miRNA regulation of human, mouse, rat RGMA using miScript Target Protectors
		Selected qRT-PCR Assays for microRNAs that regulate RGMA (see all 65):
		hsa-miR-520e hsa-miR-520f hsa-miR-1914* hsa-miR-106a hsa-miR-15a hsa-miR-93 hsa-miR-3613-3p hsa-miR-761

		SwitchGear 3'UTR luciferase reporter plasmid: RGMA 3' UTR sequence

Inhib. RNA Products:		OriGene RNAi products in human, mouse, rat for RGMA
		Predesigned siRNA for gene silencing in human, mouse, rat RGMA

Gene Editing
Products:

DNA2.0 Custom Protein Engineering Service for RGMA

Clone Products:		OriGene clones in human, mouse for RGMA (see all 29) OriGene ORF clones in mouse, rat for RGMA OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector (see all 6): RGMA (NM_020211)
		Sino Biological Human cDNA Clone for RGMA
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for RGMA
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RGMA

Cell Line Products:		GenScript Custom overexpressing Cell Line Services for RGMA
		Browse ESI BIO Cell Lines and PureStem Progenitors for RGMA

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RGMA

(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot

RGMA_HUMAN, Q96B86: Cell membrane; Lipid-anchor, GPI-anchor (By similarity)

Subcellular locations from COMPARTMENTS:

Compartment	Confidence
plasma membrane	5
endoplasmic reticulum	4
mitochondrion	2
cytosol	1
extracellular	1
lysosome	1
nucleus	1
peroxisome	1

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Gene Ontology (GO): 4 cellular component terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005783	endoplasmic reticulum	IDA	--
GO:0005886	plasma membrane	IEA	--
GO:0009986	cell surface	--	--
GO:0031225	anchored component of membrane	IEA	--

RGMA for ontologies About GeneDecksing

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for RGMA About

See pathways by source

SuperPath

Contained pathways About

L1CAM interactions

Axon guidance

0.63

Developmental Biology

0.63

Signaling by BMP

BMP receptor signaling

0.31

Spinal Cord Injury

Spinal Cord Injury

Netrin-1 signaling

Netrin-1 signaling

Pathways by source See SuperPaths
Show all pathways

2 BioSystems Pathways for RGMA

	Spinal Cord Injury
	BMP receptor signaling

1 Reactome Pathway for RGMA

Netrin-1 signaling

RGMA for pathways About GeneDecksing

Pathway & Disease-focused RT² Profiler PCR Array including RGMA:

Stem Cell Signaling in human mouse rat

Interactions:

GeneGlobe Interaction Network for RGMA

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

Selected Interacting proteins for RGMA (Q96B86^{2, 3} ENSP00000330005⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 30)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
PPP1R16A	Q96I34²^,³	MINT-65185 I2D: score=5
SGSM2	O43147²^,³	MINT-64871 I2D: score=5
AHSG	ENSP00000393887⁴	STRING: ENSP00000393887
BAMBI	ENSP00000364683⁴	STRING: ENSP00000364683
BMP2	ENSP00000368104⁴	STRING: ENSP00000368104

About this table

Gene Ontology (GO): 4 biological process terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001843	neural tube closure	--	--
GO:0007411	axon guidance	TAS	--
GO:0030509	BMP signaling pathway	--	--
GO:0030510	regulation of BMP signaling pathway	--	--

RGMA for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse compounds at ApexBio

Browse Tocris compounds for RGMA

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for RGMA gene (6 alternative transcripts):

NM_001166283.1 NM_001166286.1 NM_001166287.1 NM_001166288.1 NM_001166289.1 NM_020211.2

Unigene Cluster for RGMA:

RGM domain family, member A

Hs.271277 [show with all ESTs]

Unigene Representative Sequence: AK125047

14 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000329082(uc002bss.2) ENST00000542321(uc002bsq.2) ENST00000554387

ENST00000557301 ENST00000557420 ENST00000556658 ENST00000556087 ENST00000555584

ENST00000555598 ENST00000557608 ENST00000556950 ENST00000543599(uc021svu.1)

ENST00000425933(uc021svs.1 uc021svt.1 uc010urc.2) ENST00000538818(uc010boi.2 uc002bsr.2)

miRNA Products:		Block miRNA regulation of human, mouse, rat RGMA using miScript Target Protectors
		Selected qRT-PCR Assays for microRNAs that regulate RGMA (see all 65):
		hsa-miR-520e hsa-miR-520f hsa-miR-1914* hsa-miR-106a hsa-miR-15a hsa-miR-93 hsa-miR-3613-3p hsa-miR-761

		SwitchGear 3'UTR luciferase reporter plasmid: RGMA 3' UTR sequence

Inhib. RNA Products:		OriGene RNAi products in human, mouse, rat for RGMA
		Predesigned siRNA for gene silencing in human, mouse, rat RGMA

Clone Products:		OriGene clones in human, mouse for RGMA (see all 29) OriGene ORF clones in mouse, rat for RGMA OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector (see all 6): RGMA (NM_020211)
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for RGMA
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RGMA

Primer Products:		OriGene qPCR primer pairs and template standards for RGMA OriGene qSTAR qPCR primer pairs in human, mouse for RGMA
		Pre-validated RT² qPCR Primer Assay in human, mouse, rat RGMA
		QuantiTect SYBR Green Assays in human, mouse, rat RGMA
		QuantiFast Probe-based Assays in human, mouse, rat RGMA

Additional mRNA sequence:

AK074910.1 AK074966.1 AK074980.1 AK125047.1 AK125204.1 AK291365.1 AK299363.1 AK309814.1

AL136826.1 AL390083.1 BC015886.1 BC127826.1 BC140838.1 BC151132.1

14 DOTS entries:

DT.115395 DT.91678544 DT.91895498 DT.121072991 DT.121073001 DT.121072978 DT.121073005 DT.121072969

DT.121072976 DT.121072984 DT.121072997 DT.75103741 DT.95218133 DT.97841692

Selected AceView cDNA sequences (see all 113):

AI611126 CD514254 BF941898 BF059155 AI673327 BI917750 AW172788 CN479256

AI982513 AW410706 CK821199 BI962598 BM703696 BF529098 AI801457 BC015886

BM805742 BI822323 AL390083 BQ446865 BE294286 BI916507 AK074980 BM467742

GeneLoc Exon Structure

Selected Alternative Splicing Database (ASD) splice patterns (SP) for RGMA (see all 8) About this scheme

ExUns:	1	^	2	^	3a	·	3b	·	3c	·	3d	^	4	^	5a	·	5b	^	6a	·	6b	^	7a	·	7b	·	7c	·	7d	·	7e	·	7f	^	8
SP1:											-		-		-						-
SP2:			-		-		-		-		-		-		-						-
SP3:					-		-		-		-		-		-				-		-
SP4:											-		-		-				-		-
SP5:													-		-				-		-

ECgene alternative splicing isoforms for RGMA

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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RGMA expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: TTCACCTGGC

About this image

RGMA expression in embryonic tissues and stem cells About this table

Data from LifeMap, the Embryonic Development and Stem Cells Database


Neural Tube (Nervous System) fully expand to see all 4 entries
Metencephalon

RGMA Protein expression data from MOPED¹, PaxDb² and MaxQB³:

About this image

RGMA Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.271277

Pathway & Disease-focused RT² Profiler PCR Array including RGMA:

Stem Cell Signaling in human mouse rat

Primer Products:		OriGene qPCR primer pairs and template standards for RGMA OriGene qSTAR qPCR primer pairs in human, mouse for RGMA
		Pre-validated RT² qPCR Primer Assay in human, mouse, rat RGMA
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		QuantiFast Probe-based Assays in human, mouse, rat RGMA

In Situ
Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RGMA

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for RGMA gene from Selected species (see all 14) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Rgma^{1 , 5}	RGM domain family, member A⁵ repulsive guidance molecule family member A¹	89.1(n)¹ 93.97(a)¹		7 (41.85 cM)⁵ 244058¹ NM_177740.5¹ NP_808408.2¹ 73375520⁵
chicken (Gallus gallus)	Aves	RGMA¹	RGM domain family, member A	82.22(n) 84.94(a)		395214 NM_204537.1 NP_989868.1
lizard (Anolis carolinensis)	Reptilia	RGMA⁶	repulsive guidance molecule family member a	71(a)	1 ↔ 1	GL343392.1(947511-1006031)
African clawed frog (Xenopus laevis)	Amphibia	rgma-prov²	repulsive guidance molecule A	80.27(n)		BC045008.1
zebrafish (Danio rerio)	Actinopterygii	wufb36g11²	wufb36g11	74.13(n)		321842 BC054682.1
worm (Caenorhabditis elegans)	Secernentea	drag-1⁶	Protein DRAG-1 (drag-1) mRNA, complete cds	25(a)	1 → many	I(1680450-1685063) WBGene00022154

ENSEMBL Gene Tree for RGMA (if available)
TreeFam Gene Tree for RGMA (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for RGMA gene

RGMB² HFE2²

3 SIMAP similar genes for RGMA using alignment to 10 protein entries: RGMA_HUMAN (see all proteins):

YBX2 RGMB HFE2

RGMA for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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SNP ID	Valid	Clinical significance	Chr 15 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs149211443^1,2	C	--	73356350(+)	`CCCCAC/TCCTCT`	1	--	us2k¹		0	--	--	--	--
rs201297072^1,2	C	--	73356357(+)	`CTCTA-/GGGAGT`	1	--	us2k¹		0	--	--	--	--
rs143397169^1,2	C	--	73356382(+)	`CTTTCC/GTTCCT`	1	--	us2k¹		0	--	--	--	--
rs4778099^1,2	C,F,A,H	--	73356903(+)	`GCCGTG/AAAGTG`	1	--	us2k¹		31		NS EA NA WA	3196
rs116407371^1,2	C,F	--	73356905(+)	`CGTGAA/GGTGTG`	1	--	us2k¹		1		WA	118
rs73460360^1,2	C,F	--	73357065(+)	`GAGTTT/CAAAAA`	1	--	us2k¹		2		WA	120
rs12442144^1,2	C,F,A,H	--	93586217(+)	`ACCACA/GTAGTC`	6	--	ds500¹		23		NA NS EA CSA	2346
rs138095056^1,2	C	--	93586217(+)	`ACCAC-/ATAGTCA`	6	--	ds500¹		0	--	--	--	--
rs75329370^1,2	C	--	93586218(+)	`CCACA-/TAGTCAC`	6	--	ds500¹		0	--	--	--	--
rs139697053^1,2		--	93586237(+)	`CCTGAA/CTGTGT`	6	--	ds500¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for RGMA (93586636 - 93632443 bp)

Structural Variations
Database of Genomic Variants (DGV) 4 variations for RGMA: About this table

Variant ID	Type	Subtype	PubMed ID
nsv523617	CNV	Loss	19592680
nsv833096	CNV	Loss	17160897
dgv2437n71	CNV	Loss	21882294
dgv157n21	CNV	Loss	19592680

Human Gene Mutation Database (HGMD): RGMA

Site Specific Mutation Identification with PCR Assays

SeqTarget long-range PCR primers for resequencing RGMA

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 607362 OMIM disorders: --

12 diseases for RGMA:
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gastric ulcer spinal cord injury epididymitis hodgkin's lymphoma

kidney disease multiple sclerosis type 1 diabetes colorectal cancer

prostate cancer breast cancer neuronitis prostatitis

RGMA for disorders About GeneDecksing

Genetic Association Database (GAD): RGMA
Human Genome Epidemiology (HuGE) Navigator: RGMA (2 documents)

Export disorders for RGMA gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for RGMA gene, integrated from 10 sources (see all 39):
(articles sorted by number of sources associating them with RGMA)

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RGMA and IL21R show association with experimental inflammation and multiple sclerosis. (PubMed id 20072140)^{1, 4} Nohra R....Olsson T. (Genes Immun. 2010)
Inactivation of Ras by p120GAP via focal adhesion kinase dephosphorylation mediates RGMa-induced growth cone collapse. (PubMed id 19458235)^{1, 2} Endo M. and Yamashita T. (J. Neurosci. 2009)
Unc5B associates with LARG to mediate the action of repulsive guidance molecule. (PubMed id 19273616)^{1, 2} Hata K.... Yamashita T. (J. Cell Biol. 2009)
Linkage disequilibrium mapping of a chromosome 15q25-26 major depression linkage region and sequencing of NTRK3. (PubMed id 18367154)^{1, 4} Verma R....Levinson D.F. (Biol. Psychiatry 2008)
Repulsive guidance molecule (RGMa), a DRAGON homologue, is a bone morphogenetic protein co-receptor. (PubMed id 15975920)^{1, 3} Babitt J.L....Lin H.Y. (J. Biol. Chem. 2005)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (Nat. Genet. 2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S.... Malek J. (Genome Res. 2004)
Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)^{1, 2} Wiemann S.... Poustka A. (Genome Res. 2001)
Repulsive guidance molecule RGMa alters utilization of bone morphogenetic protein (BMP) type II receptors by BMP2 and BMP4. (PubMed id 17472960)^{1, 9} Xia Y....Lin H.Y. (J. Biol. Chem. 2007)
Emerging roles for neogenin and its ligands in CNS development. (PubMed id 18485097)^{1, 9} De Vries M. and Cooper H.M. (J. Neurochem. 2008)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 56963	HGNC: 30308	AceView: RGMA	Ensembl:ENSG00000182175	euGenes: HUgn56963
ECgene: RGMA	H-InvDB: RGMA

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for RGMA	Pharmacogenomics, SNPs, Pathways

Intellectual Property for RGMA gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for RGMA gene:
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GeneCards and IP:
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Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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RGMA Gene

Repulsive Guidance Molecule Family Member A

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RGMA Gene

Repulsive Guidance Molecule Family Member A

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