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Aliases for RGAG1 Gene

Aliases for RGAG1 Gene

  • Retrotransposon Gag Domain Containing 1 2 3
  • Tumor Antigen BJ-HCC-23 3 4
  • Retrotransposon Gag Domain-Containing Protein 1 3
  • Tumor Antigen BJHCC23 3
  • KIAA1318 4
  • MART9 3
  • MAR9 3

External Ids for RGAG1 Gene

Previous GeneCards Identifiers for RGAG1 Gene

  • GC0XP109468
  • GC0XP109662
  • GC0XP099283
  • GC0XP109602

Summaries for RGAG1 Gene

GeneCards Summary for RGAG1 Gene

RGAG1 (Retrotransposon Gag Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RGAG1 Gene

Genomics for RGAG1 Gene

Regulatory Elements for RGAG1 Gene

Genomic Location for RGAG1 Gene

Start:
110,358,816 bp from pter
End:
110,456,334 bp from pter
Size:
97,519 bases
Orientation:
Plus strand

Genomic View for RGAG1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RGAG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RGAG1 Gene

Proteins for RGAG1 Gene

  • Protein details for RGAG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NET4-RGAG1_HUMAN
    Recommended name:
    Retrotransposon gag domain-containing protein 1
    Protein Accession:
    Q8NET4
    Secondary Accessions:
    • Q9P2M8

    Protein attributes for RGAG1 Gene

    Size:
    1388 amino acids
    Molecular mass:
    144280 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA92556.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for RGAG1 Gene

Proteomics data for RGAG1 Gene at MOPED

Post-translational modifications for RGAG1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RGAG1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RGAG1 Gene

Domains for RGAG1 Gene

Protein Domains for RGAG1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RGAG1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for RGAG1 Gene

Function for RGAG1 Gene

Phenotypes for RGAG1 Gene

GenomeRNAi human phenotypes for RGAG1:
genes like me logo Genes that share phenotypes with RGAG1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RGAG1 Gene

Localization for RGAG1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RGAG1 Gene COMPARTMENTS Subcellular localization image for RGAG1 gene
Compartment Confidence
cytosol 2
nucleus 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RGAG1 Gene

Pathways for RGAG1 Gene

SuperPathways for RGAG1 Gene

No Data Available

Interacting Proteins for RGAG1 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000419786%0d%0a9606.ENSP00000384490%0d%0a9606.ENSP00000260983%0d%0a
Selected Interacting proteins: ENSP00000419786 for RGAG1 Gene via STRING

Gene Ontology (GO) - Biological Process for RGAG1 Gene

None

No data available for Pathways by source for RGAG1 Gene

Transcripts for RGAG1 Gene

mRNA/cDNA for RGAG1 Gene

(10) Selected AceView cDNA sequences:
(5) Additional mRNA sequences :
(3) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RGAG1 Gene

Retrotransposon gag domain containing 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RGAG1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RGAG1
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RGAG1 Gene

No ASD Table

Relevant External Links for RGAG1 Gene

GeneLoc Exon Structure for
RGAG1
ECgene alternative splicing isoforms for
RGAG1

Expression for RGAG1 Gene

mRNA expression in normal human tissues for RGAG1 Gene

mRNA differential expression in normal tissues according to GTEx for RGAG1 Gene

This gene is overexpressed in Testis (21.0) and Brain - Hypothalamus (4.3).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for RGAG1 Gene

SOURCE GeneReport for Unigene cluster for RGAG1 Gene Hs.201071

genes like me logo Genes that share expressions with RGAG1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for RGAG1 Gene

Orthologs for RGAG1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RGAG1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RGAG1 35
  • 99.23 (n)
  • 98.49 (a)
RGAG1 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RGAG1 35
  • 81.67 (n)
  • 71.28 (a)
RGAG1 36
  • 70 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RGAG1 35
  • 82.61 (n)
  • 72.99 (a)
RGAG1 36
  • 67 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rgag1 35
  • 79.76 (n)
  • 70.2 (a)
Rgag1 16
Rgag1 36
  • 69 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100912526 35
  • 79.35 (n)
  • 70.13 (a)
lizard
(Anolis carolinensis)
Reptilia RGAG1 36
  • 31 (a)
OneToOne
Species with no ortholog for RGAG1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RGAG1 Gene

ENSEMBL:
Gene Tree for RGAG1 (if available)
TreeFam:
Gene Tree for RGAG1 (if available)

Paralogs for RGAG1 Gene

No data available for Paralogs for RGAG1 Gene

Variants for RGAG1 Gene

Sequence variations from dbSNP and Humsavar for RGAG1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2073785 -- 110,455,531(-) AGTCC(A/C)TACTC utr-variant-3-prime
rs2073786 -- 110,451,826(-) GCTCT(C/T)ACTGG reference, synonymous-codon
rs2073787 -- 110,451,457(-) GATGT(A/T)CCTCC synonymous-codon, reference
rs2188161 -- 110,449,187(-) CCTGC(A/G)GTCAC intron-variant
rs4314820 -- 110,451,838(+) TTAGA(C/T)TCTGG synonymous-codon, reference

Structural Variations from Database of Genomic Variants (DGV) for RGAG1 Gene

Variant ID Type Subtype PubMed ID
dgv2464e1 CNV Complex 17122850

Relevant External Links for RGAG1 Gene

HapMap Linkage Disequilibrium report
RGAG1
Locus Specific Mutation Databases (LSDB)
RGAG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RGAG1 Gene

Disorders for RGAG1 Gene

(1) University of Copenhagen DISEASES for RGAG1 Gene

genes like me logo Genes that share disorders with RGAG1: view

No data available for UniProtKB/Swiss-Prot for RGAG1 Gene

Publications for RGAG1 Gene

  1. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10718198) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammals. (PMID: 15716091) Brandt J. … Volff J.-N. (Gene 2005) 2 3
  4. A family of neofunctionalized Ty3/gypsy retrotransposon genes in mammalian genomes. (PMID: 16093683) Brandt J. … Volff J.-N. (Cytogenet. Genome Res. 2005) 2 3
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3

Products for RGAG1 Gene

Sources for RGAG1 Gene

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