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Aliases for RFPL4AL1 Gene

Aliases for RFPL4AL1 Gene

  • Ret Finger Protein Like 4A Like 1 2 3 5
  • Ret Finger Protein-Like 4A-Like 1 2

External Ids for RFPL4AL1 Gene

Previous GeneCards Identifiers for RFPL4AL1 Gene

  • GC19P056283

Summaries for RFPL4AL1 Gene

GeneCards Summary for RFPL4AL1 Gene

RFPL4AL1 (Ret Finger Protein Like 4A Like 1) is a Protein Coding gene. An important paralog of this gene is RFPL4A.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RFPL4AL1 Gene

Genomics for RFPL4AL1 Gene

Genomic Location for RFPL4AL1 Gene

Chromosome:
19
Start:
55,769,118 bp from pter
End:
55,773,423 bp from pter
Size:
4,306 bases
Orientation:
Plus strand

Genomic View for RFPL4AL1 Gene

Genes around RFPL4AL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RFPL4AL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RFPL4AL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RFPL4AL1 Gene

No data available for Regulatory Elements for RFPL4AL1 Gene

Proteins for RFPL4AL1 Gene

  • Protein details for RFPL4AL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    F8VTS6-RFAL1_HUMAN
    Recommended name:
    Ret finger protein-like 4A-like protein 1
    Protein Accession:
    F8VTS6

    Protein attributes for RFPL4AL1 Gene

    Size:
    287 amino acids
    Molecular mass:
    32249 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RFPL4AL1 Gene

Post-translational modifications for RFPL4AL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RFPL4AL1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RFPL4AL1 Gene

Domains & Families for RFPL4AL1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RFPL4AL1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RFPL4AL1 Gene

Function for RFPL4AL1 Gene

Gene Ontology (GO) - Molecular Function for RFPL4AL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with RFPL4AL1: view

Phenotypes for RFPL4AL1 Gene

GenomeRNAi human phenotypes for RFPL4AL1:
genes like me logo Genes that share phenotypes with RFPL4AL1: view

Animal Model Products

CRISPR Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RFPL4AL1 Gene

Localization for RFPL4AL1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RFPL4AL1 Gene

Pathways & Interactions for RFPL4AL1 Gene

SuperPathways for RFPL4AL1 Gene

No Data Available

Interacting Proteins for RFPL4AL1 Gene

Gene Ontology (GO) - Biological Process for RFPL4AL1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RFPL4AL1 Gene

Transcripts for RFPL4AL1 Gene

mRNA/cDNA for RFPL4AL1 Gene

(2) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RFPL4AL1 Gene

No ASD Table

Relevant External Links for RFPL4AL1 Gene

GeneLoc Exon Structure for
RFPL4AL1
ECgene alternative splicing isoforms for
RFPL4AL1

Expression for RFPL4AL1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RFPL4AL1 Gene

mRNA differential expression in normal tissues according to GTEx for RFPL4AL1 Gene

This gene is overexpressed in Liver (x24.6), Testis (x12.2), and Kidney - Cortex (x5.7).

NURSA nuclear receptor signaling pathways regulating expression of RFPL4AL1 Gene:

RFPL4AL1
genes like me logo Genes that share expression patterns with RFPL4AL1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RFPL4AL1 Gene

Orthologs for RFPL4AL1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RFPL4AL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 97 (a)
ManyToMany
-- 35
  • 97 (a)
ManyToMany
-- 35
  • 97 (a)
ManyToMany
-- 35
  • 96 (a)
ManyToMany
-- 35
  • 96 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 61 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Rfpl4 35
  • 54 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 35 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 35
  • 29 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 28 (a)
ManyToMany
chicken
(Gallus gallus)
Aves B-BTN2 35
  • 17 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 18 (a)
OneToMany
Species where no ortholog for RFPL4AL1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RFPL4AL1 Gene

ENSEMBL:
Gene Tree for RFPL4AL1 (if available)
TreeFam:
Gene Tree for RFPL4AL1 (if available)

Paralogs for RFPL4AL1 Gene

Paralogs for RFPL4AL1 Gene

(11) SIMAP similar genes for RFPL4AL1 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for RFPL4AL1 Gene

genes like me logo Genes that share paralogs with RFPL4AL1: view

Variants for RFPL4AL1 Gene

Sequence variations from dbSNP and Humsavar for RFPL4AL1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1001568531 -- 55,767,281(+) ATGGG(C/T)TGATG upstream-variant-2KB
rs1003141898 -- 55,769,401(+) TCATC(A/C)GAATT intron-variant
rs1004909345 -- 55,772,674(+) CCGAA(G/T)TGGGG reference, missense
rs1007316918 -- 55,768,597(+) CTGGA(A/C)ACCGT upstream-variant-2KB
rs1009410346 -- 55,770,559(+) TTTAG(A/G)ATTGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RFPL4AL1 Gene

Variant ID Type Subtype PubMed ID
dgv1088e212 CNV gain 25503493
dgv1089e212 CNV loss 25503493
dgv541e201 CNV deletion 23290073
esv24770 CNV loss 19812545
esv2758773 CNV gain 17122850
esv2760504 CNV gain 21179565
esv2762053 CNV gain 21179565
esv3575031 CNV gain 25503493
esv3575064 CNV gain 25503493
nsv1057383 CNV gain 25217958
nsv1060269 CNV gain 25217958
nsv1060544 CNV gain 25217958
nsv1066324 CNV gain+loss 25217958
nsv1077343 CNV duplication 25765185
nsv1110332 CNV duplication 24896259
nsv2556 CNV insertion 18451855
nsv509753 CNV insertion 20534489
nsv510927 OTHER complex 20534489
nsv514904 CNV gain 21397061
nsv580346 CNV gain 21841781
nsv580347 CNV gain 21841781
nsv580348 CNV gain 21841781
nsv821063 CNV duplication 20802225
nsv828645 CNV loss 20364138
nsv833882 CNV loss 17160897
nsv960876 CNV duplication 23825009
nsv9772 CNV loss 18304495

Variation tolerance for RFPL4AL1 Gene

Gene Damage Index Score: 0.59; 12.67% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RFPL4AL1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RFPL4AL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RFPL4AL1 Gene

Disorders for RFPL4AL1 Gene

Relevant External Links for RFPL4AL1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RFPL4AL1

No disorders were found for RFPL4AL1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RFPL4AL1 Gene

Publications for RFPL4AL1 Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for RFPL4AL1 Gene

Sources for RFPL4AL1 Gene

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