Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RFPL4AL1 Gene

Aliases for RFPL4AL1 Gene

  • Ret Finger Protein-Like 4A-Like 1 2 3

External Ids for RFPL4AL1 Gene

Summaries for RFPL4AL1 Gene

GeneCards Summary for RFPL4AL1 Gene

RFPL4AL1 (Ret Finger Protein-Like 4A-Like 1) is a Protein Coding gene. An important paralog of this gene is RFPL4A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RFPL4AL1 Gene

Genomics for RFPL4AL1 Gene

Genomic Location for RFPL4AL1 Gene

Start:
55,769,141 bp from pter
End:
55,773,179 bp from pter
Size:
4,039 bases
Orientation:
Plus strand

Genomic View for RFPL4AL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RFPL4AL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RFPL4AL1 Gene

No data available for Regulatory Elements for RFPL4AL1 Gene

Proteins for RFPL4AL1 Gene

  • Protein details for RFPL4AL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    F8VTS6-RFAL1_HUMAN
    Recommended name:
    Ret finger protein-like 4A-like protein 1
    Protein Accession:
    F8VTS6
    Secondary Accessions:

    Protein attributes for RFPL4AL1 Gene

    Size:
    287 amino acids
    Molecular mass:
    32249 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RFPL4AL1 Gene

Proteomics data for RFPL4AL1 Gene at MOPED

Post-translational modifications for RFPL4AL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RFPL4AL1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RFPL4AL1 Gene

Domains for RFPL4AL1 Gene

Protein Domains for RFPL4AL1 Gene

UniProtKB/Swiss-Prot:

RFAL1_HUMAN
Domain:
  • Contains 1 B30.2/SPRY domain.:
    • F8VTS6
Similarity:
  • Contains 1 RING-type zinc finger.:
    • F8VTS6
genes like me logo Genes that share domains with RFPL4AL1: view

No data available for Gene Families for RFPL4AL1 Gene

Function for RFPL4AL1 Gene

Gene Ontology (GO) - Molecular Function for RFPL4AL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with RFPL4AL1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RFPL4AL1 Gene

Localization for RFPL4AL1 Gene

No data available for Gene Ontology (GO) - Cellular Components for RFPL4AL1 Gene

Pathways for RFPL4AL1 Gene

SuperPathways for RFPL4AL1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RFPL4AL1 Gene

None

No data available for Pathways by source for RFPL4AL1 Gene

Transcripts for RFPL4AL1 Gene

mRNA/cDNA for RFPL4AL1 Gene

(2) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RFPL4AL1 Gene

No ASD Table

Relevant External Links for RFPL4AL1 Gene

GeneLoc Exon Structure for
RFPL4AL1
ECgene alternative splicing isoforms for
RFPL4AL1

Expression for RFPL4AL1 Gene

mRNA expression in normal human tissues for RFPL4AL1 Gene

mRNA differential expression in normal tissues according to GTEx for RFPL4AL1 Gene

This gene is overexpressed in Liver (24.6), Testis (12.2), and Kidney - Cortex (5.7).
genes like me logo Genes that share expressions with RFPL4AL1: view

Orthologs for RFPL4AL1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RFPL4AL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 97 (a)
ManyToMany
-- 37
  • 97 (a)
ManyToMany
-- 37
  • 97 (a)
ManyToMany
-- 37
  • 96 (a)
ManyToMany
-- 37
  • 96 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 37
  • 29 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 61 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Rfpl4 37
  • 54 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 28 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 35 (a)
OneToMany
chicken
(Gallus gallus)
Aves B-BTN2 37
  • 17 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 18 (a)
OneToMany
Species with no ortholog for RFPL4AL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RFPL4AL1 Gene

ENSEMBL:
Gene Tree for RFPL4AL1 (if available)
TreeFam:
Gene Tree for RFPL4AL1 (if available)

Paralogs for RFPL4AL1 Gene

Paralogs for RFPL4AL1 Gene

Selected SIMAP similar genes for RFPL4AL1 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for RFPL4AL1 Gene

genes like me logo Genes that share paralogs with RFPL4AL1: view

Variants for RFPL4AL1 Gene

Sequence variations from dbSNP and Humsavar for RFPL4AL1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1820105 -- 55,771,572(+) CTTTC(A/G)GTGAA upstream-variant-2KB
rs1990973 -- 55,772,366(+) ATTTC(A/G)AAAGG intron-variant
rs2019945 -- 55,771,923(+) CCAGA(A/G)GGAGC reference, missense
rs2059149 -- 55,771,086(+) ttttt(G/T)ttttt upstream-variant-2KB
rs2059150 -- 55,771,169(+) CCTTT(G/T)GGTGT upstream-variant-2KB

Relevant External Links for RFPL4AL1 Gene

HapMap Linkage Disequilibrium report
RFPL4AL1

No data available for Structural Variations from Database of Genomic Variants (DGV) for RFPL4AL1 Gene

Disorders for RFPL4AL1 Gene

No disorders were found for RFPL4AL1 Gene.

No data available for UniProtKB/Swiss-Prot for RFPL4AL1 Gene

Publications for RFPL4AL1 Gene

  1. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PMID: 23000965) Povlsen L.K. … Choudhary C. (Nat. Cell Biol. 2012) 3
  2. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for RFPL4AL1 Gene

Sources for RFPL4AL1 Gene

Back to Top

Content