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Aliases for RFPL3S Gene

Subcategory (RNA class) for RFPL3S Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for RFPL3S Gene

  • RFPL3 Antisense 2 3 5
  • Non-Protein Coding RNA 5 2 3
  • RFPL3 Antisense RNA 1 2 4
  • RFPL3-AS1 3 4
  • Ret Finger Protein-Like 3 Antisense Gene Protein 4
  • RFPL3 Antisense RNA 1 (Non-Protein Coding) 3
  • Ret Finger Protein-Like 3 Antisense 3
  • RFPL3 Antisense Gene Protein 1 4
  • NCRNA00005 3
  • RFPL3-AS 3
  • RFPL3ANT 3
  • RFPL3AS 3

External Ids for RFPL3S Gene

ORGUL Members for RFPL3S Gene

Previous HGNC Symbols for RFPL3S Gene

  • RFPL3-AS1

Previous GeneCards Identifiers for RFPL3S Gene

  • GC22M029451
  • GC22P029280
  • GC22M031080
  • GC22M032755
  • GC22M015717

Summaries for RFPL3S Gene

GeneCards Summary for RFPL3S Gene

RFPL3S (RFPL3 Antisense) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RFPL3S Gene

Genomics for RFPL3S Gene

Regulatory Elements for RFPL3S Gene

Enhancers for RFPL3S Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F031969 0.5 ENCODE 13.1 +411.5 411474 1.2 ATF1 PKNOX1 SIN3A GLI4 ZNF48 ZNF2 GLIS2 ZNF143 ZNF548 ZNF263 IGLCOR22-2 LOC105372999 RN7SL305P ENSG00000227813 AP1B1P2 ENSG00000230120 ENSG00000214125 RFPL3S RTCB YWHAH
GH22F032406 0.8 Ensembl ENCODE 11.1 -25.5 -25538 1.7 HDGF ZNF76 ARID4B KLF17 BMI1 GLIS2 SCRT2 ETV6 KLF7 EGR2 SLC5A4 LOC100422292 ENSG00000241954 RFPL3S IGLVIVOR22-2 LOC339666 FBXO7 RTCB GC22P032387
GH22F032423 0.6 FANTOM5 11 -41.7 -41657 0.1 TBP POLR2A SMAD5 ENSG00000241954 LOC100422292 RFPL3S IGLVIVOR22-2 LOC339666 BPIFC FBXO7 RFPL3 TIMP3 PIR41331
GH22F032410 1.2 FANTOM5 ENCODE 10.9 -29.5 -29496 2.8 ATF1 ARID4B SIN3A FEZF1 DMAP1 YY1 GLIS2 ZNF143 ZNF207 FOS LOC100422292 FBXO7 ENSG00000241954 RFPL3S IGLVIVOR22-2 LOC339666 BPIFC RTCB RFPL2 RFPL3
GH22F032218 0.6 FANTOM5 Ensembl 10.6 +163.1 163070 1.1 MAX PRDM1 MYC SLC5A4 IGLVIVOR22-2 LOC339666 LOC100422292 ENSG00000241954 RFPL3S SLC5A1 FBXO7 DEPDC5 RFPL2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RFPL3S on UCSC Golden Path with GeneCards custom track

Genomic Location for RFPL3S Gene

Chromosome:
22
Start:
32,359,906 bp from pter
End:
32,382,052 bp from pter
Size:
22,147 bases
Orientation:
Minus strand

Genomic View for RFPL3S Gene

Genes around RFPL3S on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RFPL3S Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RFPL3S Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RFPL3S Gene

Proteins for RFPL3S Gene

  • Protein details for RFPL3S Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C7P2-RFL3S_HUMAN
    Recommended name:
    Putative protein RFPL3S
    Protein Accession:
    P0C7P2
    Secondary Accessions:
    • Q5TI83
    • Q5TI84

    Protein attributes for RFPL3S Gene

    Size:
    107 amino acids
    Molecular mass:
    11739 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • The gene encoding RFPL3S is located on the opposite strand of the gene encoding RFPL3. Its transcription may play a role in RFPL3 transcription regulation.
    SequenceCaution:
    • Sequence=CAB38257.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; Sequence=CAI19584.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

neXtProt entry for RFPL3S Gene

Post-translational modifications for RFPL3S Gene

No Post-translational modifications

Other Protein References for RFPL3S Gene

No data available for DME Specific Peptides for RFPL3S Gene

Domains & Families for RFPL3S Gene

Protein Domains for RFPL3S Gene

ProtoNet:

Suggested Antigen Peptide Sequences for RFPL3S Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RFPL3S: view

No data available for Gene Families and UniProtKB/Swiss-Prot for RFPL3S Gene

Function for RFPL3S Gene

Molecular function for RFPL3S Gene

GENATLAS Biochemistry:
ret finger protein-like 3,antisense transcript,overlapping RFRL3

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RFPL3S Gene

Localization for RFPL3S Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RFPL3S Gene

Pathways & Interactions for RFPL3S Gene

SuperPathways for RFPL3S Gene

No Data Available

Interacting Proteins for RFPL3S Gene

Gene Ontology (GO) - Biological Process for RFPL3S Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RFPL3S Gene

Transcripts for RFPL3S Gene

Unigene Clusters for RFPL3S Gene

RFPL3 antisense:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RFPL3S Gene

No ASD Table

Relevant External Links for RFPL3S Gene

GeneLoc Exon Structure for
RFPL3S
ECgene alternative splicing isoforms for
RFPL3S

Expression for RFPL3S Gene

mRNA expression in normal human tissues for RFPL3S Gene

mRNA differential expression in normal tissues according to GTEx for RFPL3S Gene

This gene is overexpressed in Testis (x22.5).

Protein differential expression in normal tissues from HIPED for RFPL3S Gene

This gene is overexpressed in Heart (67.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for RFPL3S Gene



Protein tissue co-expression partners for RFPL3S Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RFPL3S Gene:

RFPL3S

SOURCE GeneReport for Unigene cluster for RFPL3S Gene:

Hs.274285

mRNA Expression by UniProt/SwissProt for RFPL3S Gene:

P0C7P2-RFL3S_HUMAN
Tissue specificity: Strongly expressed in the testis and weakly in brain, placenta and pancreas.
genes like me logo Genes that share expression patterns with RFPL3S: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for RFPL3S Gene

Orthologs for RFPL3S Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RFPL3S Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RFPL3S 35
  • 94 (a)
OneToOne
Species where no ortholog for RFPL3S was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RFPL3S Gene

ENSEMBL:
Gene Tree for RFPL3S (if available)
TreeFam:
Gene Tree for RFPL3S (if available)

Paralogs for RFPL3S Gene

Pseudogenes.org Pseudogenes for RFPL3S Gene

genes like me logo Genes that share paralogs with RFPL3S: view

No data available for Paralogs for RFPL3S Gene

Variants for RFPL3S Gene

Sequence variations from dbSNP and Humsavar for RFPL3S Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs10427626 -- 32,365,955(+) gggag(A/G)atcag intron-variant
rs11089558 -- 32,373,081(+) AAAAT(C/G)TACTC upstream-variant-2KB
rs111329429 -- 32,364,705(+) GGTGG(C/T)GGGCG intron-variant
rs111744781 -- 32,361,430(+) TAAAA(C/T)TAATA intron-variant, downstream-variant-500B
rs111840961 -- 32,361,608(+) AATCA(A/G)GGACT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RFPL3S Gene

Variant ID Type Subtype PubMed ID
esv2422247 CNV duplication 17116639
esv3575476 CNV gain 25503493
esv3893474 CNV gain 25118596
nsv459874 CNV gain 19166990
nsv519170 CNV gain 19592680
nsv588895 CNV gain 21841781

Variation tolerance for RFPL3S Gene

Gene Damage Index Score: 0.92; 19.16% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RFPL3S Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RFPL3S

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RFPL3S Gene

Disorders for RFPL3S Gene

Relevant External Links for RFPL3S

Genetic Association Database (GAD)
RFPL3S
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RFPL3S

No disorders were found for RFPL3S Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RFPL3S Gene

Publications for RFPL3S Gene

  1. Duplications on human chromosome 22 reveal a novel Ret finger protein-like gene family with sense and endogenous antisense transcripts. (PMID: 10508838) Seroussi E. … Dumanski J.P. (Genome Res. 1999) 2 3 4 22 64
  2. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 4 64
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 46 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  5. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 4 64

Products for RFPL3S Gene

Sources for RFPL3S Gene

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