Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RFPL3S Gene

Subcategory (RNA class) for RFPL3S Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for RFPL3S Gene

  • RFPL3 Antisense 2 3
  • Non-Protein Coding RNA 5 2 3
  • RFPL3 Antisense RNA 1 2 4
  • RFPL3-AS1 3 4
  • Ret Finger Protein-Like 3 Antisense Gene Protein 4
  • RFPL3 Antisense RNA 1 (Non-Protein Coding) 3
  • Ret Finger Protein-Like 3 Antisense 3
  • RFPL3 Antisense Gene Protein 1 4
  • NCRNA00005 3
  • RFPL3-AS 3
  • RFPL3ANT 3
  • RFPL3AS 3

External Ids for RFPL3S Gene

ORGUL Members for RFPL3S Gene

Previous Symbols for RFPL3S Gene

  • RFPL3-AS1

Summaries for RFPL3S Gene

GeneCards Summary for RFPL3S Gene

RFPL3S (RFPL3 Antisense) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RFPL3S Gene

Genomics for RFPL3S Gene

Genomic Location for RFPL3S Gene

Start:
32,359,906 bp from pter
End:
32,382,052 bp from pter
Size:
22,147 bases
Orientation:
Minus strand

Genomic View for RFPL3S Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RFPL3S Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RFPL3S Gene

Regulatory Elements for RFPL3S Gene

Proteins for RFPL3S Gene

  • Protein details for RFPL3S Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C7P2-RFL3S_HUMAN
    Recommended name:
    Putative protein RFPL3S
    Protein Accession:
    P0C7P2
    Secondary Accessions:
    • Q5TI83
    • Q5TI84

    Protein attributes for RFPL3S Gene

    Size:
    107 amino acids
    Molecular mass:
    11739 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • The gene encoding RFPL3S is located on the opposite strand of the gene encoding RFPL3. Its transcription may play a role in RFPL3 transcription regulation
    SequenceCaution:
    • Sequence=CAB38257.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; Sequence=CAI19584.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

neXtProt entry for RFPL3S Gene

Proteomics data for RFPL3S Gene at MOPED

Post-translational modifications for RFPL3S Gene

No Post-translational modifications

Other Protein References for RFPL3S Gene

No data available for DME Specific Peptides for RFPL3S Gene

Domains for RFPL3S Gene

Protein Domains for RFPL3S Gene

ProtoNet:
genes like me logo Genes that share domains with RFPL3S: view

No data available for Gene Families and UniProtKB/Swiss-Prot for RFPL3S Gene

Function for RFPL3S Gene

Molecular function for RFPL3S Gene

GENATLAS Biochemistry: ret finger protein-like 3,antisense transcript,overlapping RFRL3

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RFPL3S Gene

Localization for RFPL3S Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RFPL3S Gene COMPARTMENTS Subcellular localization image for RFPL3S gene
Compartment Confidence
mitochondrion 2
nucleus 2
cytosol 1
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for RFPL3S Gene

Pathways for RFPL3S Gene

SuperPathways for RFPL3S Gene

No Data Available

Interacting Proteins for RFPL3S Gene

Gene Ontology (GO) - Biological Process for RFPL3S Gene

None

No data available for Pathways by source for RFPL3S Gene

Transcripts for RFPL3S Gene

Unigene Clusters for RFPL3S Gene

RFPL3 antisense:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RFPL3S Gene

No ASD Table

Relevant External Links for RFPL3S Gene

GeneLoc Exon Structure for
RFPL3S
ECgene alternative splicing isoforms for
RFPL3S

Expression for RFPL3S Gene

mRNA expression in normal human tissues for RFPL3S Gene

mRNA differential expression in normal tissues according to GTEx for RFPL3S Gene

This gene is overexpressed in Testis (22.5).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for RFPL3S Gene

SOURCE GeneReport for Unigene cluster for RFPL3S Gene Hs.274285

mRNA Expression by UniProt/SwissProt for RFPL3S Gene

P0C7P2-RFL3S_HUMAN
Tissue specificity: Strongly expressed in the testis and weakly in brain, placenta and pancreas.
genes like me logo Genes that share expressions with RFPL3S: view

Orthologs for RFPL3S Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RFPL3S Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RFPL3S 37
  • 94 (a)
OneToOne
Species with no ortholog for RFPL3S:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RFPL3S Gene

ENSEMBL:
Gene Tree for RFPL3S (if available)
TreeFam:
Gene Tree for RFPL3S (if available)

Paralogs for RFPL3S Gene

Pseudogenes.org Pseudogenes for RFPL3S Gene

genes like me logo Genes that share paralogs with RFPL3S: view

No data available for Paralogs for RFPL3S Gene

Variants for RFPL3S Gene

Sequence variations from dbSNP and Humsavar for RFPL3S Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs713620 -- 32,367,536(+) TCACC(C/T)GAAAA intron-variant
rs713647 -- 32,367,842(+) CCCCA(A/G)CATCT intron-variant
rs738267 -- 32,367,800(+) GCTCT(C/T)GGTAA intron-variant
rs3884744 -- 32,368,026(+) tacaa(A/T)tcaca intron-variant
rs5749410 -- 32,368,111(+) ATGGC(A/G)TGAAC intron-variant

Relevant External Links for RFPL3S Gene

HapMap Linkage Disequilibrium report
RFPL3S

No data available for Structural Variations from Database of Genomic Variants (DGV) for RFPL3S Gene

Disorders for RFPL3S Gene

Relevant External Links for RFPL3S

Genetic Association Database (GAD)
RFPL3S
genes like me logo Genes that share disorders with RFPL3S: view

No data available for UniProtKB/Swiss-Prot for RFPL3S Gene

Publications for RFPL3S Gene

  1. Duplications on human chromosome 22 reveal a novel Ret finger protein-like gene family with sense and endogenous antisense transcripts. (PMID: 10508838) Seroussi E. … Dumanski J.P. (Genome Res. 1999) 2 3 4 23
  2. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 4
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 49
  4. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for RFPL3S Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RFPL3S
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RFPL3S
    • Block miRNA regulation of RFPL3S using miScript Target Protectors

    Sources for RFPL3S Gene

    Back to Top

    Content