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Aliases for RFPL3 Gene

Aliases for RFPL3 Gene

  • Ret Finger Protein-Like 3 2 3

External Ids for RFPL3 Gene

Summaries for RFPL3 Gene

GeneCards Summary for RFPL3 Gene

RFPL3 (Ret Finger Protein-Like 3) is a Protein Coding gene. An important paralog of this gene is RFPL4A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RFPL3 Gene

Genomics for RFPL3 Gene

Genomic Location for RFPL3 Gene

Start:
32,354,885 bp from pter
End:
32,361,161 bp from pter
Size:
6,277 bases
Orientation:
Plus strand

Genomic View for RFPL3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RFPL3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RFPL3 Gene

Regulatory Elements for RFPL3 Gene

Proteins for RFPL3 Gene

  • Protein details for RFPL3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O75679-RFPL3_HUMAN
    Recommended name:
    Ret finger protein-like 3
    Protein Accession:
    O75679
    Secondary Accessions:
    • A2A279
    • Q6IC03
    • Q6IC04
    • Q6NSX3
    • Q8N5R4

    Protein attributes for RFPL3 Gene

    Size:
    317 amino acids
    Molecular mass:
    35386 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAA09046.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for RFPL3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RFPL3 Gene

Proteomics data for RFPL3 Gene at MOPED

Post-translational modifications for RFPL3 Gene

No Post-translational modifications

Other Protein References for RFPL3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RFPL3 Gene

Domains for RFPL3 Gene

UniProtKB/Swiss-Prot:

RFPL3_HUMAN
Domain:
  • Contains 1 B30.2/SPRY domain.:
    • O75679
Similarity:
  • Contains 1 RING-type zinc finger.:
    • O75679
genes like me logo Genes that share domains with RFPL3: view

No data available for Gene Families for RFPL3 Gene

Function for RFPL3 Gene

Molecular function for RFPL3 Gene

GENATLAS Biochemistry: ret finger protein-like 3,B box family

Gene Ontology (GO) - Molecular Function for RFPL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with RFPL3: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RFPL3 Gene

Localization for RFPL3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RFPL3 Gene COMPARTMENTS Subcellular localization image for RFPL3 gene
Compartment Confidence
extracellular 2
cytosol 1
mitochondrion 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for RFPL3 Gene

Pathways for RFPL3 Gene

SuperPathways for RFPL3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RFPL3 Gene

None

No data available for Pathways by source for RFPL3 Gene

Transcripts for RFPL3 Gene

mRNA/cDNA for RFPL3 Gene

(2) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RFPL3 Gene

Ret finger protein-like 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RFPL3 Gene

No ASD Table

Relevant External Links for RFPL3 Gene

GeneLoc Exon Structure for
RFPL3
ECgene alternative splicing isoforms for
RFPL3

Expression for RFPL3 Gene

mRNA expression in normal human tissues for RFPL3 Gene

mRNA differential expression in normal tissues according to GTEx for RFPL3 Gene

This gene is overexpressed in Testis (34.0) and Brain - Cerebellar Hemisphere (4.3).

SOURCE GeneReport for Unigene cluster for RFPL3 Gene Hs.558455

genes like me logo Genes that share expressions with RFPL3: view

Orthologs for RFPL3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RFPL3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 87 (a)
OneToMany
RFPL3 36
  • 98.26 (n)
  • 95.49 (a)
cow
(Bos Taurus)
Mammalia -- 37
  • 25 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 57 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Mefv 37
  • 5 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 26 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 40 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 13 (a)
ManyToMany
Species with no ortholog for RFPL3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RFPL3 Gene

ENSEMBL:
Gene Tree for RFPL3 (if available)
TreeFam:
Gene Tree for RFPL3 (if available)

Paralogs for RFPL3 Gene

Paralogs for RFPL3 Gene

Selected SIMAP similar genes for RFPL3 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for RFPL3 Gene

genes like me logo Genes that share paralogs with RFPL3: view

Variants for RFPL3 Gene

Sequence variations from dbSNP and Humsavar for RFPL3 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs1807553 -- 32,357,727(+) CTCCC(A/G)AAGTG upstream-variant-2KB, intron-variant
rs1810450 -- 32,356,572(+) GTTTA(A/C)TGGTA upstream-variant-2KB, intron-variant
rs1985543 -- 32,356,463(+) CCCCC(A/C)TTACA upstream-variant-2KB, intron-variant
rs2413109 -- 32,355,928(+) CAGCT(C/G)GGATA upstream-variant-2KB, intron-variant
rs2413110 -- 32,357,230(+) CCAAG(C/G)CTGGA upstream-variant-2KB, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RFPL3 Gene

Variant ID Type Subtype PubMed ID
esv2422247 CNV Duplication 17116639
nsv459874 CNV Gain 19166990

Relevant External Links for RFPL3 Gene

HapMap Linkage Disequilibrium report
RFPL3

Disorders for RFPL3 Gene

No disorders were found for RFPL3 Gene.

No data available for UniProtKB/Swiss-Prot for RFPL3 Gene

Publications for RFPL3 Gene

  1. Duplications on human chromosome 22 reveal a novel Ret finger protein-like gene family with sense and endogenous antisense transcripts. (PMID: 10508838) Seroussi E. … Dumanski J.P. (Genome Res. 1999) 2 3 4 23
  2. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 3 4
  3. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 4
  4. Evolutionary forces shape the human RFPL1,2,3 genes toward a role in neocortex development. (PMID: 18656177) Bonnefont J. … Krause K.H. (Am. J. Hum. Genet. 2008) 3
  5. Identification of RFPL3 protein as a novel E3 ubiquitin ligase modulating the integration activity of human immunodeficiency virus, type 1 preintegration complex using a microtiter plate-based assay. (PMID: 25107902) Tan B.H. … Suzuki Y. (J. Biol. Chem. 2014) 3

Products for RFPL3 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Ubiquitin Ligases in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate RFPL3
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RFPL3
    • Block miRNA regulation of RFPL3 using miScript Target Protectors

    Sources for RFPL3 Gene

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