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Aliases for RFPL1S Gene

Subcategory (RNA class) for RFPL1S Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for RFPL1S Gene

  • RFPL1 Antisense RNA 1 2 3 5
  • RFPL1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 6 2 3
  • NCRNA00006 3
  • RFPL1-AS1 3
  • RFPL1-AS 3
  • RFPL1AS 3

External Ids for RFPL1S Gene

Previous HGNC Symbols for RFPL1S Gene

  • RFPL1-AS1

Previous GeneCards Identifiers for RFPL1S Gene

  • GC22U990065
  • GC22M028163
  • GC22M029833

Summaries for RFPL1S Gene

GeneCards Summary for RFPL1S Gene

RFPL1S (RFPL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RFPL1S Gene

Genomics for RFPL1S Gene

Regulatory Elements for RFPL1S Gene

Enhancers for RFPL1S Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F029419 0.8 Ensembl ENCODE 12.5 +58.1 58074 0.6 RNF2 NR2F1 ZEB2 RAD21 YY1 NR2F2 ARID1B GATA3 ATF3 IKZF1 RFPL1S AP1B1 LOC102723305
GH22F029421 0.2 Ensembl 12.5 +56.7 56675 0.6 RFPL1S AP1B1 LOC102723305
GH22F029456 0.5 ENCODE 10.4 +21.6 21605 0.7 OSR2 RFX1 RFPL1S PIR46787 ENSG00000274457
GH22F029431 1 ENCODE 7.2 +46.1 46136 0.7 FOSL1 MCM3 TARDBP NIPSNAP1 RFPL1S RFPL4AP6 ENSG00000242156
GH22F029469 1.2 Ensembl ENCODE 6.2 +7.7 7747 1.4 PKNOX1 ATF1 KLF17 ARID4B SIN3A ZNF48 RAD21 ZNF2 ETS1 GLIS2 RFPL1 THOC5 RFPL1S NIPSNAP1 PIR46787
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RFPL1S on UCSC Golden Path with GeneCards custom track

Genomic Location for RFPL1S Gene

29,436,534 bp from pter
29,478,175 bp from pter
41,642 bases
Minus strand

Genomic View for RFPL1S Gene

Genes around RFPL1S on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RFPL1S Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RFPL1S Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RFPL1S Gene

Proteins for RFPL1S Gene

Post-translational modifications for RFPL1S Gene

No Post-translational modifications

No data available for DME Specific Peptides for RFPL1S Gene

Domains & Families for RFPL1S Gene

Suggested Antigen Peptide Sequences for RFPL1S Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RFPL1S Gene

Function for RFPL1S Gene

Molecular function for RFPL1S Gene

GENATLAS Biochemistry:
ret finger protein-like 1,antisense transcript,overlapping RFRL1

Phenotypes for RFPL1S Gene

genes like me logo Genes that share phenotypes with RFPL1S: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RFPL1S Gene

Localization for RFPL1S Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RFPL1S Gene

Pathways & Interactions for RFPL1S Gene

SuperPathways for RFPL1S Gene

No Data Available

Interacting Proteins for RFPL1S Gene

Gene Ontology (GO) - Biological Process for RFPL1S Gene


No data available for Pathways by source and SIGNOR curated interactions for RFPL1S Gene

Transcripts for RFPL1S Gene

mRNA/cDNA for RFPL1S Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RFPL1S Gene

RFPL1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RFPL1S Gene

No ASD Table

Relevant External Links for RFPL1S Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RFPL1S Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RFPL1S Gene

mRNA differential expression in normal tissues according to GTEx for RFPL1S Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x8.0), Brain - Anterior cingulate cortex (BA24) (x6.4), Brain - Cortex (x6.3), Brain - Hippocampus (x4.5), Brain - Amygdala (x4.4), Brain - Putamen (basal ganglia) (x4.1), and Brain - Nucleus accumbens (basal ganglia) (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of RFPL1S Gene:


SOURCE GeneReport for Unigene cluster for RFPL1S Gene:

genes like me logo Genes that share expression patterns with RFPL1S: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RFPL1S Gene

Orthologs for RFPL1S Gene

Evolution for RFPL1S Gene

Gene Tree for RFPL1S (if available)
Gene Tree for RFPL1S (if available)

No data available for Orthologs for RFPL1S Gene

Paralogs for RFPL1S Gene

No data available for Paralogs for RFPL1S Gene

Variants for RFPL1S Gene

Sequence variations from dbSNP and Humsavar for RFPL1S Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs10211999 -- 29,441,594(+) TCTGA(C/T)GACCT nc-transcript-variant, reference, synonymous-codon
rs10711888 -- 29,442,960(+) AAAGC(-/A)AAAAA downstream-variant-500B, upstream-variant-2KB
rs112199048 -- 29,438,428(+) TCCAC(C/T)CACGT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs112326135 -- 29,439,069(+) GCCCA(-/G)TTGGC nc-transcript-variant, reference, frameshift-variant
rs112996541 -- 29,442,635(+) GTGCC(A/G)GGATT downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RFPL1S Gene

Variant ID Type Subtype PubMed ID
nsv1059994 CNV gain 25217958
nsv1060197 CNV gain 25217958
nsv1110864 OTHER inversion 24896259
nsv964618 CNV duplication 23825009
nsv979667 CNV duplication 23825009

Relevant External Links for RFPL1S Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RFPL1S Gene

Disorders for RFPL1S Gene

Relevant External Links for RFPL1S

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for RFPL1S Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RFPL1S Gene

Publications for RFPL1S Gene

  1. Duplications on human chromosome 22 reveal a novel Ret finger protein-like gene family with sense and endogenous antisense transcripts. (PMID: 10508838) Seroussi E. … Dumanski J.P. (Genome Res. 1999) 2 3 22 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RFPL1S Gene

Sources for RFPL1S Gene

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