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Aliases for RFESD Gene

Aliases for RFESD Gene

  • Rieske (Fe-S) Domain Containing 2 3

External Ids for RFESD Gene

Summaries for RFESD Gene

GeneCards Summary for RFESD Gene

RFESD (Rieske (Fe-S) Domain Containing) is a Protein Coding gene. GO annotations related to this gene include oxidoreductase activity and 2 iron, 2 sulfur cluster binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RFESD Gene

Genomics for RFESD Gene

Genomic Location for RFESD Gene

Start:
95,646,754 bp from pter
End:
95,684,773 bp from pter
Size:
38,020 bases
Orientation:
Plus strand

Genomic View for RFESD Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RFESD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RFESD Gene

Regulatory Elements for RFESD Gene

Proteins for RFESD Gene

  • Protein details for RFESD Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TAC1-RFESD_HUMAN
    Recommended name:
    Rieske domain-containing protein
    Protein Accession:
    Q8TAC1
    Secondary Accessions:
    • J3KPH1

    Protein attributes for RFESD Gene

    Size:
    157 amino acids
    Molecular mass:
    17762 Da
    Cofactor:
    Name=[2Fe-2S] cluster; Xref=ChEBI:CHEBI:49601; Note=Binds 1 [2Fe-2S] cluster per subunit.;
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for RFESD Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RFESD Gene

Proteomics data for RFESD Gene at MOPED

Post-translational modifications for RFESD Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RFESD Gene

No data available for DME Specific Peptides for RFESD Gene

Domains for RFESD Gene

Protein Domains for RFESD Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

RFESD_HUMAN
Domain:
  • Contains 2 Rieske domains.:
    • Q8TAC1
genes like me logo Genes that share domains with RFESD: view

No data available for Gene Families for RFESD Gene

Function for RFESD Gene

Gene Ontology (GO) - Molecular Function for RFESD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0016491 oxidoreductase activity IEA --
GO:0046872 metal ion binding IEA --
GO:0051537 2 iron, 2 sulfur cluster binding IEA --
genes like me logo Genes that share ontologies with RFESD: view

Phenotypes for RFESD Gene

genes like me logo Genes that share phenotypes with RFESD: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RFESD Gene

Localization for RFESD Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RFESD Gene COMPARTMENTS Subcellular localization image for RFESD gene
Compartment Confidence
extracellular 2
golgi apparatus 2
mitochondrion 2
nucleus 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for RFESD Gene

Pathways for RFESD Gene

SuperPathways for RFESD Gene

No Data Available

Interacting Proteins for RFESD Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000369341%0d%0a9606.ENSP00000199708%0d%0a
Selected Interacting proteins: ENSP00000369341 Q8TAC1-RFESD_HUMAN for RFESD Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for RFESD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0055114 oxidation-reduction process IEA --
genes like me logo Genes that share ontologies with RFESD: view

No data available for Pathways by source for RFESD Gene

Transcripts for RFESD Gene

Unigene Clusters for RFESD Gene

Rieske (Fe-S) domain containing:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RFESD Gene

No ASD Table

Relevant External Links for RFESD Gene

GeneLoc Exon Structure for
RFESD
ECgene alternative splicing isoforms for
RFESD

Expression for RFESD Gene

mRNA expression in normal human tissues for RFESD Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RFESD Gene

This gene is overexpressed in Testis (6.7).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for RFESD Gene

SOURCE GeneReport for Unigene cluster for RFESD Gene Hs.399758

genes like me logo Genes that share expressions with RFESD: view

Orthologs for RFESD Gene

This gene was present in the common ancestor of chordates.

Orthologs for RFESD Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RFESD 36
  • 99.52 (n)
  • 99.52 (a)
RFESD 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RFESD 36
  • 91.03 (n)
  • 86.54 (a)
RFESD 37
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RFESD 36
  • 93.12 (n)
  • 90.32 (a)
RFESD 37
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rfesd 36
  • 87.26 (n)
  • 86.62 (a)
Rfesd 16
Rfesd 37
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RFESD 37
  • 69 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RFESD 37
  • 68 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rfesd 36
  • 85.06 (n)
  • 83.77 (a)
chicken
(Gallus gallus)
Aves RFESD 36
  • 64.86 (n)
  • 56.63 (a)
RFESD 37
  • 49 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RFESD 37
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rfesd 36
  • 65.99 (n)
  • 57.82 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC559859 36
  • 61.87 (n)
  • 56.82 (a)
rfesd 37
  • 35 (a)
OneToMany
RFESD (1 of 4) 37
  • 10 (a)
OneToMany
RFESD (2 of 4) 37
  • 50 (a)
OneToMany
RFESD (4 of 4) 37
  • 38 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2103 37
  • 27 (a)
OneToOne
Species with no ortholog for RFESD:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RFESD Gene

ENSEMBL:
Gene Tree for RFESD (if available)
TreeFam:
Gene Tree for RFESD (if available)

Paralogs for RFESD Gene

Pseudogenes.org Pseudogenes for RFESD Gene

genes like me logo Genes that share paralogs with RFESD: view

No data available for Paralogs for RFESD Gene

Variants for RFESD Gene

Sequence variations from dbSNP and Humsavar for RFESD Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs213507 -- 95,651,062(-) GGAGT(A/G)CAGTG intron-variant
rs213885 -- 95,651,254(-) AAATA(C/T)AGTAA intron-variant
rs213887 -- 95,647,007(-) CGGTG(A/G)GTCTC utr-variant-5-prime, intron-variant
rs213888 -- 95,646,289(-) TTAGC(C/T)GGGCG upstream-variant-2KB
rs985547 -- 95,648,989(+) ATTCT(C/T)AAATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RFESD Gene

Variant ID Type Subtype PubMed ID
esv2659181 CNV Deletion 23128226

Relevant External Links for RFESD Gene

HapMap Linkage Disequilibrium report
RFESD

Disorders for RFESD Gene

No disorders were found for RFESD Gene.

No data available for UniProtKB/Swiss-Prot for RFESD Gene

Publications for RFESD Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Decoding the fine-scale structure of a breast cancer genome and transcriptome. (PMID: 16461635) Volik S. … Collins C. (Genome Res. 2006) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for RFESD Gene

Sources for RFESD Gene

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