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Aliases for RERG-AS1 Gene

Subcategory (RNA class) for RERG-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RERG-AS1 Gene

  • RERG Antisense RNA 1 2 3 5
  • RERG Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RERG-AS1 Gene

Previous GeneCards Identifiers for RERG-AS1 Gene

  • GC00U933308
  • GC12P015305

Summaries for RERG-AS1 Gene

GeneCards Summary for RERG-AS1 Gene

RERG-AS1 (RERG Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RERG-AS1 Gene

Genomics for RERG-AS1 Gene

Regulatory Elements for RERG-AS1 Gene

Enhancers for RERG-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G015152 1 ENCODE dbSUPER 0.7 +1.0 958 1.1 CTCF JUN CEBPB DPF2 EP300 RAD21 FOXA1 HIC1 JUND GATA3 RERG-AS1 GC12M015169
GH12G015151 0.8 ENCODE dbSUPER 0.7 -0.2 -222 0.2 CTCF ZNF654 SMC3 RAD21 ZNF507 RERG-AS1 GC12P015145
GH12G015162 1.3 Ensembl ENCODE dbSUPER 0.4 +12.3 12346 3.5 TBP MXI1 TAF1 JUN MAX CEBPG RFX5 FOSL1 GATA3 ZSCAN5C GC12M015169 RERG-AS1
GH12G015155 0.5 Ensembl dbSUPER 0.7 +3.6 3578 0.2 RERG-AS1 GC12M015169
GH12G015156 0.7 ENCODE dbSUPER 0.4 +5.2 5234 0.8 PBX2 NR2F2 FOXA1 RERG RERG-AS1 GC12M015169
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RERG-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RERG-AS1 Gene

Chromosome:
12
Start:
15,151,923 bp from pter
End:
15,155,283 bp from pter
Size:
3,361 bases
Orientation:
Plus strand

Genomic View for RERG-AS1 Gene

Genes around RERG-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RERG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RERG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RERG-AS1 Gene

Proteins for RERG-AS1 Gene

Post-translational modifications for RERG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RERG-AS1 Gene

Domains & Families for RERG-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RERG-AS1 Gene

Function for RERG-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RERG-AS1 Gene

Localization for RERG-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RERG-AS1 Gene

Pathways & Interactions for RERG-AS1 Gene

SuperPathways for RERG-AS1 Gene

No Data Available

Interacting Proteins for RERG-AS1 Gene

Gene Ontology (GO) - Biological Process for RERG-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RERG-AS1 Gene

Drugs & Compounds for RERG-AS1 Gene

No Compound Related Data Available

Transcripts for RERG-AS1 Gene

mRNA/cDNA for RERG-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RERG-AS1 Gene

No ASD Table

Relevant External Links for RERG-AS1 Gene

GeneLoc Exon Structure for
RERG-AS1
ECgene alternative splicing isoforms for
RERG-AS1

Expression for RERG-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RERG-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RERG-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x17.6) and Uterus (x6.3).
genes like me logo Genes that share expression patterns with RERG-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RERG-AS1 Gene

Orthologs for RERG-AS1 Gene

Evolution for RERG-AS1 Gene

ENSEMBL:
Gene Tree for RERG-AS1 (if available)
TreeFam:
Gene Tree for RERG-AS1 (if available)

No data available for Orthologs for RERG-AS1 Gene

Paralogs for RERG-AS1 Gene

No data available for Paralogs for RERG-AS1 Gene

Variants for RERG-AS1 Gene

Sequence variations from dbSNP and Humsavar for RERG-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000587980 -- 15,152,878(+) ATAAC(A/T)CTGCT intron-variant
rs1001455065 -- 15,154,807(+) GTAAA(A/C)AGAAT intron-variant
rs1001597639 -- 15,151,322(+) TCTTA(A/C/G)AAGCA intron-variant, upstream-variant-2KB
rs1002059455 -- 15,153,543(+) TTATA(A/C)GGAAC intron-variant
rs1002571048 -- 15,150,146(+) TAGTA(A/G)TCACC intron-variant, upstream-variant-2KB

Relevant External Links for RERG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RERG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RERG-AS1 Gene

Disorders for RERG-AS1 Gene

Relevant External Links for RERG-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RERG-AS1

No disorders were found for RERG-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RERG-AS1 Gene

Publications for RERG-AS1 Gene

No publications were found for RERG-AS1 Gene.

Products for RERG-AS1 Gene

Sources for RERG-AS1 Gene

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