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Aliases for REREP3 Gene

Aliases for REREP3 Gene

  • Arginine-Glutamic Acid Dipeptide Repeats Pseudogene 3 2 3
  • Arginine-Glutamic Acid Dipeptide (RE) Repeats Pseudogene 3 2
  • RP11-603B24.1 5

External Ids for REREP3 Gene

Previous GeneCards Identifiers for REREP3 Gene

  • GC15P022546

Summaries for REREP3 Gene

GeneCards Summary for REREP3 Gene

REREP3 (Arginine-Glutamic Acid Dipeptide Repeats Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for REREP3 Gene

Genomics for REREP3 Gene

Regulatory Elements for REREP3 Gene

Enhancers for REREP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G022262 0.9 Ensembl ENCODE 0.4 +5.8 5824 4.6 CEBPB MAX NR3C1 GABPA GATA3 CEBPA SCRT2 GABPB1 CREB1 FOS REREP3 LOC105370721
GH15G022259 0.4 Ensembl 0.7 +1.4 1387 0.4 MNT REREP3 LOC105370721
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around REREP3 on UCSC Golden Path with GeneCards custom track

Promoters for REREP3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000073973 -14 401

Genomic Location for REREP3 Gene

Chromosome:
15
Start:
22,258,614 bp from pter
End:
22,282,880 bp from pter
Size:
24,267 bases
Orientation:
Plus strand

Genomic View for REREP3 Gene

Genes around REREP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
REREP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for REREP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for REREP3 Gene

Proteins for REREP3 Gene

Post-translational modifications for REREP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for REREP3 Gene

Domains & Families for REREP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for REREP3 Gene

Function for REREP3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for REREP3 Gene

Localization for REREP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for REREP3 Gene

Pathways & Interactions for REREP3 Gene

SuperPathways for REREP3 Gene

No Data Available

Interacting Proteins for REREP3 Gene

Gene Ontology (GO) - Biological Process for REREP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for REREP3 Gene

Drugs & Compounds for REREP3 Gene

No Compound Related Data Available

Transcripts for REREP3 Gene

mRNA/cDNA for REREP3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for REREP3 Gene

Arginine-glutamic acid dipeptide (RE) repeats pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for REREP3 Gene

No ASD Table

Relevant External Links for REREP3 Gene

GeneLoc Exon Structure for
REREP3
ECgene alternative splicing isoforms for
REREP3

Expression for REREP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for REREP3 Gene

mRNA differential expression in normal tissues according to GTEx for REREP3 Gene

This gene is overexpressed in Testis (x25.7).

NURSA nuclear receptor signaling pathways regulating expression of REREP3 Gene:

REREP3

SOURCE GeneReport for Unigene cluster for REREP3 Gene:

Hs.451294
genes like me logo Genes that share expression patterns with REREP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for REREP3 Gene

Orthologs for REREP3 Gene

Evolution for REREP3 Gene

ENSEMBL:
Gene Tree for REREP3 (if available)
TreeFam:
Gene Tree for REREP3 (if available)

No data available for Orthologs for REREP3 Gene

Paralogs for REREP3 Gene

No data available for Paralogs for REREP3 Gene

Variants for REREP3 Gene

Sequence variations from dbSNP and Humsavar for REREP3 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000127477 -- 22,282,600(+) TTTAA(A/G)TTATT intron-variant
rs1000744601 -- 22,265,556(+) TCTCC(C/T)TCCTT intron-variant
rs1001576585 -- 22,269,473(+) AGTTC(C/T)TCCTA intron-variant
rs1001746549 -- 22,269,066(+) GATGT(C/G)ATTGT intron-variant
rs1002580961 -- 22,275,972(+) TCCCA(A/G)AGTGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for REREP3 Gene

Variant ID Type Subtype PubMed ID
dgv100e55 CNV loss 17911159
dgv10n14 CNV loss 18776910
dgv1167n106 CNV duplication 24896259
dgv11n14 CNV gain 18776910
dgv1373e59 CNV duplication 20981092
dgv1374e59 CNV duplication 20981092
dgv1n1 OTHER inversion 15895083
dgv2175n100 CNV gain 25217958
dgv2179n100 CNV gain 25217958
dgv2181n100 CNV gain 25217958
dgv2183n100 CNV loss 25217958
dgv2191n100 CNV gain+loss 25217958
dgv2192n100 CNV loss 25217958
dgv2193n100 CNV gain+loss 25217958
dgv2214n100 CNV gain 25217958
dgv2238n100 CNV gain 25217958
dgv2283n100 CNV gain 25217958
dgv2284n100 CNV gain 25217958
dgv2290n100 CNV gain+loss 25217958
dgv2301n100 CNV loss 25217958
dgv2325n100 CNV gain+loss 25217958
dgv2327n100 CNV gain 25217958
dgv2333n100 CNV loss 25217958
dgv2364n100 CNV gain 25217958
dgv2365n100 CNV gain+loss 25217958
dgv2368n100 CNV loss 25217958
dgv2372n100 CNV gain 25217958
dgv2373n100 CNV gain+loss 25217958
dgv2374n100 CNV loss 25217958
dgv2387n100 CNV gain 25217958
dgv2391n100 CNV loss 25217958
dgv2393n100 CNV gain 25217958
dgv2394n100 CNV gain+loss 25217958
dgv2397n100 CNV gain 25217958
dgv2399n100 CNV loss 25217958
dgv2401n100 CNV gain 25217958
dgv2402n100 CNV loss 25217958
dgv3e224 CNV gain+loss 25118596
dgv4162n54 CNV loss 21841781
dgv4222n54 CNV gain 21841781
dgv4223n54 CNV gain+loss 21841781
dgv4224n54 CNV loss 21841781
dgv422n67 CNV gain 20364138
dgv4260n54 CNV gain+loss 21841781
dgv4261n54 CNV gain 21841781
dgv4262n54 CNV loss 21841781
dgv4264n54 CNV gain 21841781
dgv4274n54 CNV loss 21841781
dgv4276n54 CNV gain 21841781
dgv4277n54 CNV gain+loss 21841781
dgv4291n54 CNV gain 21841781
dgv4292n54 CNV loss 21841781
dgv4293n54 CNV loss 21841781
dgv4297n54 CNV loss 21841781
dgv4298n54 CNV loss 21841781
dgv4299n54 CNV gain 21841781
dgv4300n54 CNV loss 21841781
dgv4302n54 CNV loss 21841781
dgv4303n54 CNV loss 21841781
dgv440e214 CNV gain 21293372
dgv441e214 CNV gain 21293372
dgv92e55 CNV gain 17911159
dgv93e55 CNV gain 17911159
dgv96e55 CNV loss 17911159
dgv99e55 CNV gain 17911159
esv1004259 OTHER inversion 20482838
esv1530729 CNV insertion 17803354
esv1651692 CNV insertion 17803354
esv2599755 CNV insertion 19546169
esv2659551 CNV deletion 23128226
esv2751492 CNV gain 17911159
esv29701 CNV gain+loss 19812545
esv33051 CNV gain+loss 17666407
esv3347749 CNV duplication 20981092
esv3584854 CNV gain 24956385
esv3584876 CNV gain 24956385
esv3635795 CNV loss 21293372
esv3635800 CNV loss 21293372
esv3892607 CNV gain 25118596
esv3892609 CNV gain 25118596
esv3892612 CNV gain 25118596
nsv1036457 CNV loss 25217958
nsv1036711 CNV gain 25217958
nsv1051715 CNV gain+loss 25217958
nsv1078374 CNV duplication 25765185
nsv1147657 CNV duplication 26484159
nsv1152511 CNV deletion 26484159
nsv428296 CNV gain+loss 18775914
nsv442688 CNV gain 18776908
nsv476372 CNV novel sequence insertion 20440878
nsv510653 CNV deletion 20534489
nsv511041 OTHER inversion 20534489
nsv514767 CNV gain+loss 21397061
nsv567312 CNV gain 21841781
nsv568129 CNV loss 21841781
nsv568136 CNV gain 21841781
nsv568142 CNV loss 21841781
nsv568143 CNV loss 21841781
nsv568155 CNV loss 21841781
nsv568159 CNV gain 21841781
nsv568165 CNV loss 21841781
nsv568166 CNV loss 21841781
nsv7260 OTHER inversion 18451855
nsv819960 CNV gain 19587683
nsv821678 CNV loss 15273396
nsv827237 CNV gain 20364138
nsv827239 CNV gain 20364138
nsv827240 CNV gain 20364138
nsv832919 CNV gain+loss 17160897
nsv832920 CNV loss 17160897
nsv832921 CNV loss 17160897
nsv9179 CNV gain+loss 18304495
nsv952561 CNV duplication 24416366

Relevant External Links for REREP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
REREP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for REREP3 Gene

Disorders for REREP3 Gene

Relevant External Links for REREP3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
REREP3

No disorders were found for REREP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for REREP3 Gene

Publications for REREP3 Gene

No publications were found for REREP3 Gene.

Products for REREP3 Gene

Sources for REREP3 Gene

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