Free for academic non-profit institutions. Other users need a Commercial license

Aliases for REPIN1 Gene

Aliases for REPIN1 Gene

  • Replication Initiator 1 2 3
  • Zinc Finger Protein 464 (RIP60) 2 2 3
  • Replication Initiation Region Protein (60kD) 2 3
  • 60 KDa Replication Initiation Region Protein 3 4
  • 60 KDa Origin-Specific DNA-Binding Protein 3 4
  • DHFR Oribeta-Binding Protein RIP60 3 4
  • Zinc Finger Protein AP4 2 3
  • ATT-Binding Protein 3 4
  • ZNF464 3 4
  • RIP60 3 4
  • Zinc Finger Protein 464 4
  • H_DJ0584D14.12 3
  • Zfp464 3
  • AP4 3

External Ids for REPIN1 Gene

Previous HGNC Symbols for REPIN1 Gene

  • ZNF464

Previous GeneCards Identifiers for REPIN1 Gene

  • GC07P149380
  • GC07P149459
  • GC07P149505
  • GC07P149698
  • GC07P150066
  • GC07P143882

Summaries for REPIN1 Gene

GeneCards Summary for REPIN1 Gene

REPIN1 (Replication Initiator 1) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and poly(A) RNA binding.

UniProtKB/Swiss-Prot for REPIN1 Gene

  • Sequence-specific double-stranded DNA-binding protein required for initiation of chromosomal DNA replication. Binds on 5-ATT-3 reiterated sequences downstream of the origin of bidirectional replication (OBR) and a second, homologous ATT sequence of opposite orientation situated within the OBR zone. Facilitates DNA bending

Gene Wiki entry for REPIN1 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for REPIN1 Gene

Genomics for REPIN1 Gene

Regulatory Elements for REPIN1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for REPIN1 Gene

Chromosome:
7
Start:
150,368,189 bp from pter
End:
150,374,044 bp from pter
Size:
5,856 bases
Orientation:
Plus strand

Genomic View for REPIN1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for REPIN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for REPIN1 Gene

Proteins for REPIN1 Gene

  • Protein details for REPIN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BWE0-REPI1_HUMAN
    Recommended name:
    Replication initiator 1
    Protein Accession:
    Q9BWE0
    Secondary Accessions:
    • C9J3L7
    • D3DWZ1
    • Q7LE03
    • Q9BUZ6
    • Q9NZH2
    • Q9UMP5

    Protein attributes for REPIN1 Gene

    Size:
    567 amino acids
    Molecular mass:
    63575 Da
    Quaternary structure:
    • Homodimers and homomultimers. Found in a complex with RIP60 and RIP100.
    SequenceCaution:
    • Sequence=AAH00363.2; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAS00386.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAB53100.1; Type=Frameshift; Positions=8; Evidence={ECO:0000305};

    Alternative splice isoforms for REPIN1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for REPIN1 Gene

Proteomics data for REPIN1 Gene at MOPED

Post-translational modifications for REPIN1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

No data available for DME Specific Peptides for REPIN1 Gene

Domains & Families for REPIN1 Gene

Gene Families for REPIN1 Gene

Protein Domains for REPIN1 Gene

Suggested Antigen Peptide Sequences for REPIN1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BWE0

UniProtKB/Swiss-Prot:

REPI1_HUMAN :
  • Contains 15 C2H2-type zinc fingers.
Similarity:
  • Contains 15 C2H2-type zinc fingers.
genes like me logo Genes that share domains with REPIN1: view

Function for REPIN1 Gene

Molecular function for REPIN1 Gene

UniProtKB/Swiss-Prot Function:
Sequence-specific double-stranded DNA-binding protein required for initiation of chromosomal DNA replication. Binds on 5-ATT-3 reiterated sequences downstream of the origin of bidirectional replication (OBR) and a second, homologous ATT sequence of opposite orientation situated within the OBR zone. Facilitates DNA bending

Gene Ontology (GO) - Molecular Function for REPIN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0044822 poly(A) RNA binding IDA 22658674
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with REPIN1: view
genes like me logo Genes that share phenotypes with REPIN1: view

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for REPIN1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for REPIN1 Gene

Localization for REPIN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for REPIN1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for REPIN1 Gene COMPARTMENTS Subcellular localization image for REPIN1 gene
Compartment Confidence
nucleus 4
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for REPIN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA --
GO:0005664 nuclear origin of replication recognition complex TAS 10606657
GO:0005811 lipid particle IEA --
GO:0005829 cytosol --
genes like me logo Genes that share ontologies with REPIN1: view

Pathways & Interactions for REPIN1 Gene

SuperPathways for REPIN1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for REPIN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006260 DNA replication IEA --
GO:2000191 regulation of fatty acid transport IEA --
GO:2001273 regulation of glucose import in response to insulin stimulus IEA --
genes like me logo Genes that share ontologies with REPIN1: view

No data available for Pathways by source and SIGNOR curated interactions for REPIN1 Gene

Drugs & Compounds for REPIN1 Gene

No Compound Related Data Available

Transcripts for REPIN1 Gene

Unigene Clusters for REPIN1 Gene

Replication initiator 1:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for REPIN1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for REPIN1 Gene

No ASD Table

Relevant External Links for REPIN1 Gene

GeneLoc Exon Structure for
REPIN1
ECgene alternative splicing isoforms for
REPIN1

Expression for REPIN1 Gene

mRNA expression in normal human tissues for REPIN1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for REPIN1 Gene

This gene is overexpressed in Lymph node (23.4) and Lung (13.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for REPIN1 Gene



SOURCE GeneReport for Unigene cluster for REPIN1 Gene Hs.647086

genes like me logo Genes that share expression patterns with REPIN1: view

Protein tissue co-expression partners for REPIN1 Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for REPIN1 Gene

Orthologs for REPIN1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for REPIN1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia REPIN1 35
  • 85.51 (n)
  • 88.91 (a)
REPIN1 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia REPIN1 35
  • 87.35 (n)
  • 90.47 (a)
REPIN1 36
  • 64 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Repin1 35
  • 84.34 (n)
  • 87.96 (a)
Repin1 16
Repin1 36
  • 88 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia REPIN1 35
  • 99.52 (n)
  • 99.52 (a)
REPIN1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Repin1 35
  • 83.7 (n)
  • 88.14 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 36 (a)
OneToMany
-- 36
  • 36 (a)
OneToMany
Species with no ortholog for REPIN1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for REPIN1 Gene

ENSEMBL:
Gene Tree for REPIN1 (if available)
TreeFam:
Gene Tree for REPIN1 (if available)

Paralogs for REPIN1 Gene

Pseudogenes.org Pseudogenes for REPIN1 Gene

genes like me logo Genes that share paralogs with REPIN1: view

No data available for Paralogs for REPIN1 Gene

Variants for REPIN1 Gene

Sequence variations from dbSNP and Humsavar for REPIN1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs6722 -- 150,371,844(+) GTAGC(C/T)GAGGC synonymous-codon, reference
rs14356 -- 150,373,958(-) ACAAG(A/G)CCCAA utr-variant-3-prime
rs1051760 -- 150,373,541(+) TGTTA(A/G)TACTT utr-variant-3-prime
rs1051764 -- 150,373,574(+) GCAGA(C/T)CCCAA utr-variant-3-prime
rs1051823 -- 150,373,725(+) GTCAC(A/G)GCAAG utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for REPIN1 Gene

Variant ID Type Subtype PubMed ID
dgv7541n71 CNV Loss 21882294
nsv521407 CNV Loss 19592680
nsv889459 CNV Loss 21882294
dgv7542n71 CNV Loss 21882294
nsv889462 CNV Loss 21882294

Variation tolerance for REPIN1 Gene

Residual Variation Intolerance Score: 60.89% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 18.93; 98.72% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for REPIN1 Gene

HapMap Linkage Disequilibrium report
REPIN1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for REPIN1 Gene

Disorders for REPIN1 Gene

Relevant External Links for REPIN1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
REPIN1
genes like me logo Genes that share disorders with REPIN1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for REPIN1 Gene

Publications for REPIN1 Gene

  1. The dhfr oribeta-binding protein RIP60 contains 15 zinc fingers: DNA binding and looping by the central three fingers and an associated proline-rich region. (PMID: 10606657) Houchens C.R. … Heintz N.H. (Nucleic Acids Res. 2000) 2 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  3. Crosstalk of AP4 and TGFI^ receptor signaling in NSCLC. (PMID: 25266805) Wang W. … Tian Y. (Tumour Biol. 2015) 67
  4. The central role of EED in the orchestration of polycomb group complexes. (PMID: 24457600) Cao Q. … Chinnaiyan A.M. (Nat Commun 2014) 67
  5. p53-Induced miR-15a/16-1 and AP4 Form a Double-Negative Feedback Loop to Regulate Epithelial-Mesenchymal Transition and Metastasis in Colorectal Cancer. (PMID: 24285725) Shi L. … Hermeking H. (Cancer Res. 2014) 67

Products for REPIN1 Gene

Sources for REPIN1 Gene

Back to Top

Content