Free for academic non-profit institutions. Other users need a Commercial license

Aliases for REP15 Gene

Aliases for REP15 Gene

  • RAB15 Effector Protein 2 3
  • RAB15EP 3

External Ids for REP15 Gene

Summaries for REP15 Gene

Entrez Gene Summary for REP15 Gene

  • REP15 is a binding partner of the RAB GTPase family member RAB15 that facilitates transferrin receptor (TFRC; MIM 190010) recycling from the endocytic recycling compartment (Strick and Elferink, 2005 [PubMed 16195351]).[supplied by OMIM, Mar 2008]

GeneCards Summary for REP15 Gene

REP15 (RAB15 Effector Protein) is a Protein Coding gene.

UniProtKB/Swiss-Prot for REP15 Gene

  • Regulates transferrin receptor recycling from the endocytic recycling compartment.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for REP15 Gene

Genomics for REP15 Gene

Genomic Location for REP15 Gene

Start:
27,696,495 bp from pter
End:
27,697,633 bp from pter
Size:
1,139 bases
Orientation:
Plus strand

Genomic View for REP15 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for REP15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for REP15 Gene

Regulatory Elements for REP15 Gene

Proteins for REP15 Gene

  • Protein details for REP15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6BDI9-REP15_HUMAN
    Recommended name:
    Rab15 effector protein
    Protein Accession:
    Q6BDI9
    Secondary Accessions:
    • B2RU16

    Protein attributes for REP15 Gene

    Size:
    236 amino acids
    Molecular mass:
    26571 Da
    Quaternary structure:
    • Interacts with the GTP-bound form of RAB15.
    SequenceCaution:
    • Sequence=AAT76304.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in the N-terminal part.; Evidence={ECO:0000305};

neXtProt entry for REP15 Gene

Proteomics data for REP15 Gene at MOPED

Post-translational modifications for REP15 Gene

No Post-translational modifications

Other Protein References for REP15 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for REP15 Gene

Domains for REP15 Gene

Protein Domains for REP15 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with REP15: view

No data available for Gene Families and UniProtKB/Swiss-Prot for REP15 Gene

Function for REP15 Gene

Molecular function for REP15 Gene

UniProtKB/Swiss-Prot Function: Regulates transferrin receptor recycling from the endocytic recycling compartment.

Gene Ontology (GO) - Molecular Function for REP15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16195351
genes like me logo Genes that share ontologies with REP15: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for REP15 Gene

Localization for REP15 Gene

Subcellular locations from UniProtKB/Swiss-Prot for REP15 Gene

Early endosome membrane. Note=Colocalizes with RAB11 and RAB15 to the endocytic recycling compartment.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for REP15 Gene COMPARTMENTS Subcellular localization image for REP15 gene
Compartment Confidence
endosome 5
cytosol 1
endoplasmic reticulum 1
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for REP15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010008 endosome membrane IDA 16195351
GO:0031901 early endosome membrane IEA --
GO:0048471 perinuclear region of cytoplasm IDA 16195351
GO:0055037 recycling endosome IDA 16195351
genes like me logo Genes that share ontologies with REP15: view

Pathways for REP15 Gene

SuperPathways for REP15 Gene

No Data Available

Interacting Proteins for REP15 Gene

Gene Ontology (GO) - Biological Process for REP15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001881 receptor recycling IMP 16195351
GO:0002230 positive regulation of defense response to virus by host IMP 22020285
GO:0033572 transferrin transport IDA 16195351
GO:0098779 activation of mitophagy in response to mitochondrial depolarization IMP 22020285
genes like me logo Genes that share ontologies with REP15: view

No data available for Pathways by source for REP15 Gene

Compounds for REP15 Gene

(1) HMDB Compounds for REP15 Gene

Compound Synonyms Cas Number PubMed IDs
Guanosine triphosphate
  • 5'-GTP
86-01-1
genes like me logo Genes that share compounds with REP15: view

Transcripts for REP15 Gene

mRNA/cDNA for REP15 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for REP15 Gene

RAB15 effector protein:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for REP15 Gene

No ASD Table

Relevant External Links for REP15 Gene

GeneLoc Exon Structure for
REP15
ECgene alternative splicing isoforms for
REP15

Expression for REP15 Gene

mRNA expression in normal human tissues for REP15 Gene

mRNA differential expression in normal tissues according to GTEx for REP15 Gene

This gene is overexpressed in Colon - Transverse (13.0) and Stomach (8.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for REP15 Gene

SOURCE GeneReport for Unigene cluster for REP15 Gene Hs.269836

genes like me logo Genes that share expressions with REP15: view

Orthologs for REP15 Gene

This gene was present in the common ancestor of chordates.

Orthologs for REP15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia REP15 36
  • 99.58 (n)
  • 99.15 (a)
REP15 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia REP15 36
  • 84.48 (n)
  • 81.03 (a)
REP15 37
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia REP15 36
  • 88.14 (n)
  • 84.75 (a)
mouse
(Mus musculus)
Mammalia Rep15 36
  • 79.28 (n)
  • 74.78 (a)
Rep15 16
Rep15 37
  • 75 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rep15 36
  • 79.13 (n)
  • 74.78 (a)
lizard
(Anolis carolinensis)
Reptilia REP15 37
  • 53 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rep15 36
  • 59.1 (n)
  • 48.91 (a)
Species with no ortholog for REP15:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for REP15 Gene

ENSEMBL:
Gene Tree for REP15 (if available)
TreeFam:
Gene Tree for REP15 (if available)

Paralogs for REP15 Gene

No data available for Paralogs for REP15 Gene

Variants for REP15 Gene

Sequence variations from dbSNP and Humsavar for REP15 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs929948 -- 27,696,862(+) GGATC(C/T)AACAA reference, synonymous-codon
rs929949 - 27,696,863(+) GATCC(A/G)ACAAG reference, missense
rs1549404 -- 27,697,384(+) TGTTT(C/T)CCCAT utr-variant-3-prime
rs3751232 -- 27,696,502(+) CTTTT(A/G)CTTTG utr-variant-5-prime
rs4931321 -- 27,696,188(+) aaaac(A/G)aaaac upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for REP15 Gene

Variant ID Type Subtype PubMed ID
esv2745664 CNV Deletion 23290073
nsv832358 CNV Gain 17160897
nsv469178 CNV Gain 19166990

Relevant External Links for REP15 Gene

HapMap Linkage Disequilibrium report
REP15

Disorders for REP15 Gene

No disorders were found for REP15 Gene.

No data available for UniProtKB/Swiss-Prot for REP15 Gene

Publications for REP15 Gene

  1. Rab15 effector protein: a novel protein for receptor recycling from the endocytic recycling compartment. (PMID: 16195351) Strick D.J. … Elferink L.A. (Mol. Biol. Cell 2005) 2 3 4 23
  2. Functional properties of rab15 effector protein in endocytic recycling. (PMID: 16473635) Elferink L.A. … Strick D.J. (Meth. Enzymol. 2005) 23
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Image-based genome-wide siRNA screen identifies selective autophagy factors. (PMID: 22020285) Orvedahl A. … Levine B. (Nature 2011) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for REP15 Gene

Sources for REP15 Gene

Back to Top

Content