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Aliases for RELT Gene

Aliases for RELT Gene

  • RELT Tumor Necrosis Factor Receptor 2 3 5
  • Receptor Expressed In Lymphoid Tissues 3 4
  • TNFRSF19L 3 4
  • Tumor Necrosis Factor Receptor Superfamily, Member 19-Like 2
  • TRLT 3

External Ids for RELT Gene

Previous HGNC Symbols for RELT Gene

  • TNFRSF19L

Previous GeneCards Identifiers for RELT Gene

  • GC11P072766
  • GC11P073087
  • GC11P069382

Summaries for RELT Gene

Entrez Gene Summary for RELT Gene

  • The protein encoded by this gene is a member of the TNF-receptor superfamily. This receptor is especially abundant in hematologic tissues. It has been shown to activate the NF-kappaB pathway and selectively bind TNF receptor-associated factor 1 (TRAF1). This receptor is capable of stimulating T-cell proliferation in the presence of CD3 signaling, which suggests its regulatory role in immune response. Two alternatively spliced transcript variants of this gene encoding the same protein have been reported. [provided by RefSeq, Jul 2008]

GeneCards Summary for RELT Gene

RELT (RELT Tumor Necrosis Factor Receptor) is a Protein Coding gene. Among its related pathways are TNF Signaling (sino) and PEDF Induced Signaling. An important paralog of this gene is RELL1.

UniProtKB/Swiss-Prot for RELT Gene

  • Mediates activation of NF-kappa-B. May play a role in T-cell activation.

Gene Wiki entry for RELT Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RELT Gene

Genomics for RELT Gene

Regulatory Elements for RELT Gene

Enhancers for RELT Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RELT on UCSC Golden Path with GeneCards custom track

Promoters for RELT Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RELT on UCSC Golden Path with GeneCards custom track

Genomic Location for RELT Gene

Chromosome:
11
Start:
73,376,264 bp from pter
End:
73,397,474 bp from pter
Size:
21,211 bases
Orientation:
Plus strand

Genomic View for RELT Gene

Genes around RELT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RELT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RELT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RELT Gene

Proteins for RELT Gene

  • Protein details for RELT Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q969Z4-TR19L_HUMAN
    Recommended name:
    Tumor necrosis factor receptor superfamily member 19L
    Protein Accession:
    Q969Z4
    Secondary Accessions:
    • Q86V34
    • Q96JU1
    • Q9BUX7

    Protein attributes for RELT Gene

    Size:
    430 amino acids
    Molecular mass:
    46092 Da
    Quaternary structure:
    • Associates with TRAF1. Interacts with RELL1, RELL2 and OXSR1.
    SequenceCaution:
    • Sequence=BAB84954.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305};

neXtProt entry for RELT Gene

Proteomics data for RELT Gene at MOPED

Post-translational modifications for RELT Gene

Other Protein References for RELT Gene

Antibody Products

  • R&D Systems Antibodies for RELT (RELT/TNFRSF19L)

No data available for DME Specific Peptides for RELT Gene

Domains & Families for RELT Gene

Gene Families for RELT Gene

Protein Domains for RELT Gene

Suggested Antigen Peptide Sequences for RELT Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q969Z4

UniProtKB/Swiss-Prot:

TR19L_HUMAN :
  • Belongs to the RELT family.
  • Contains 1 TNFR-Cys repeat.
Family:
  • Belongs to the RELT family.
Similarity:
  • Contains 1 TNFR-Cys repeat.
genes like me logo Genes that share domains with RELT: view

Function for RELT Gene

Molecular function for RELT Gene

UniProtKB/Swiss-Prot Function:
Mediates activation of NF-kappa-B. May play a role in T-cell activation.
genes like me logo Genes that share phenotypes with RELT: view

Animal Model Products

  • Taconic Biosciences Mouse Models for RELT

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RELT Gene

Localization for RELT Gene

Subcellular locations from UniProtKB/Swiss-Prot for RELT Gene

Cell membrane; Single-pass type I membrane protein. Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RELT Gene COMPARTMENTS Subcellular localization image for RELT gene
Compartment Confidence
extracellular 5
plasma membrane 4
nucleus 2
lysosome 1
mitochondrion 1
vacuole 1

Gene Ontology (GO) - Cellular Components for RELT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with RELT: view

Pathways & Interactions for RELT Gene

genes like me logo Genes that share pathways with RELT: view

Pathways by source for RELT Gene

3 Sino Biological pathways for RELT Gene
1 KEGG pathway for RELT Gene

Interacting Proteins for RELT Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000064780%0d%0a9606.ENSP00000313385%0d%0a9606.ENSP00000348278%0d%0a9606.ENSP00000362994%0d%0a
Selected Interacting proteins: ENSP00000064780 Q969Z4-TR19L_HUMAN for RELT Gene via STRING I2D

Gene Ontology (GO) - Biological Process for RELT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007275 multicellular organism development IBA --
GO:0032496 response to lipopolysaccharide IBA --
GO:0033209 tumor necrosis factor-mediated signaling pathway IBA --
GO:0042127 regulation of cell proliferation IBA --
GO:0043410 positive regulation of MAPK cascade IBA --
genes like me logo Genes that share ontologies with RELT: view

No data available for SIGNOR curated interactions for RELT Gene

Drugs & Compounds for RELT Gene

No Compound Related Data Available

Transcripts for RELT Gene

Unigene Clusters for RELT Gene

RELT tumor necrosis factor receptor:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RELT Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b · 10c · 10d ^ 11a · 11b · 11c ^ 12 ^ 13 ^ 14 ^ 15
SP1: - - - - - - -
SP2: - - - - - -
SP3: -
SP4: - -
SP5: - - - - - - -
SP6:
SP7:
SP8: - - - - - - -
SP9:

Relevant External Links for RELT Gene

GeneLoc Exon Structure for
RELT
ECgene alternative splicing isoforms for
RELT

Expression for RELT Gene

mRNA expression in normal human tissues for RELT Gene

mRNA differential expression in normal tissues according to GTEx for RELT Gene

This gene is overexpressed in Whole Blood (x18.9).

Protein differential expression in normal tissues from HIPED for RELT Gene

This gene is overexpressed in Urine (62.1) and Heart (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RELT Gene



SOURCE GeneReport for Unigene cluster for RELT Gene Hs.533720

mRNA Expression by UniProt/SwissProt for RELT Gene

Q969Z4-TR19L_HUMAN
Tissue specificity: Highest levels are in spleen, lymph node, thymus, peripheral blood leukocytes, bone marrow and fetal liver. Very low levels in skeletal muscle, testis and colon. Not detected in brain, kidney and pancreas.
genes like me logo Genes that share expression patterns with RELT: view

Protein tissue co-expression partners for RELT Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for RELT Gene

Orthologs for RELT Gene

This gene was present in the common ancestor of chordates.

Orthologs for RELT Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RELT 35
  • 84.88 (n)
  • 82.42 (a)
RELT 36
  • 80 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RELT 35
  • 86.26 (n)
  • 85.78 (a)
RELT 36
  • 81 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Relt 35
  • 84.54 (n)
  • 86.01 (a)
Relt 16
Relt 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RELT 35
  • 99.46 (n)
  • 99.07 (a)
RELT 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Relt 35
  • 83.37 (n)
  • 84.31 (a)
oppossum
(Monodelphis domestica)
Mammalia RELT 36
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves RELT 35
  • 61.81 (n)
  • 57.59 (a)
RELT 36
  • 48 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RELT 36
  • 53 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii relt 35
  • 55.62 (n)
  • 50 (a)
relt 36
  • 38 (a)
OneToOne
Species with no ortholog for RELT:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RELT Gene

ENSEMBL:
Gene Tree for RELT (if available)
TreeFam:
Gene Tree for RELT (if available)

Paralogs for RELT Gene

Paralogs for RELT Gene

genes like me logo Genes that share paralogs with RELT: view

Variants for RELT Gene

Sequence variations from dbSNP and Humsavar for RELT Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs12362779 - 73,394,683(+) CAAGG(C/T)CGGGG nc-transcript-variant, reference, missense
rs876480 -- 73,375,258(-) CATGC(C/T)CAGGT upstream-variant-2KB
rs880317 -- 73,397,231(-) GGTGC(C/T)CAGCC nc-transcript-variant, utr-variant-3-prime
rs1002126 -- 73,393,151(-) AAGGG(G/T)CTCTG intron-variant, utr-variant-5-prime
rs1002127 -- 73,392,790(-) TAACT(C/G)CAAGG intron-variant, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for RELT Gene

Variant ID Type Subtype PubMed ID
nsv832208 CNV Gain 17160897
nsv825993 CNV Gain 20364138
nsv897911 CNV Loss 21882294

Variation tolerance for RELT Gene

Residual Variation Intolerance Score: 79.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.21; 52.29% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for RELT Gene

Disorders for RELT Gene

Relevant External Links for RELT

Human Genome Epidemiology (HuGE) Navigator
RELT
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RELT

No disorders were found for RELT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RELT Gene

Publications for RELT Gene

  1. RELT, a new member of the tumor necrosis factor receptor superfamily, is selectively expressed in hematopoietic tissues and activates transcription factor NF-kappaB. (PMID: 11313261) Sica G.L. … Chen L. (Blood 2001) 2 3 4 23 67
  2. Identification of RELT homologues that associate with RELT and are phosphorylated by OSR1. (PMID: 16389068) Cusick J.K. … Shu H.-B. (Biochem. Biophys. Res. Commun. 2006) 2 3
  3. Interactions of tumor necrosis factor (TNF) and TNF receptor family members in the mouse and human. (PMID: 16547002) Bossen C. … Schneider P. (J. Biol. Chem. 2006) 2 3
  4. TRAIL-induced cleavage and inactivation of SPAK sensitizes cells to apoptosis. (PMID: 16950202) Polek T.C. … Spivak-Kroizman T.R. (Biochem. Biophys. Res. Commun. 2006) 2 3
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3

Products for RELT Gene

Sources for RELT Gene

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