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Aliases for REG4 Gene

Aliases for REG4 Gene

  • Regenerating Family Member 4 2 3 5
  • Gastrointestinal Secretory Protein 2 3 4
  • Regenerating Islet-Derived Family, Member 4 2 3
  • Regenerating Islet-Derived Protein IV 3 4
  • Regenerating Gene Type IV 2 3
  • REG-Like Protein 3 4
  • Reg IV 3 4
  • REG-4 3 4
  • GISP 3 4
  • RELP 3 4
  • REG-IV 3

External Ids for REG4 Gene

Previous GeneCards Identifiers for REG4 Gene

  • GC01M119483
  • GC01M119683
  • GC01M120048
  • GC01M120138
  • GC01M120336
  • GC01M118195

Summaries for REG4 Gene

GeneCards Summary for REG4 Gene

REG4 (Regenerating Family Member 4) is a Protein Coding gene. Diseases associated with REG4 include ulcerative colitis. GO annotations related to this gene include calcium ion binding and heparin binding. An important paralog of this gene is REG3G.

UniProtKB/Swiss-Prot for REG4 Gene

  • Calcium-independent lectin displaying mannose-binding specificity and able to maintain carbohydrate recognition activity in an acidic environment. May be involved in inflammatory and metaplastic responses of the gastrointestinal epithelium.

Gene Wiki entry for REG4 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for REG4 Gene

Genomics for REG4 Gene

Regulatory Elements for REG4 Gene

Genomic Location for REG4 Gene

Chromosome:
1
Start:
119,794,018 bp from pter
End:
119,811,660 bp from pter
Size:
17,643 bases
Orientation:
Minus strand

Genomic View for REG4 Gene

Genes around REG4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
REG4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for REG4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for REG4 Gene

Proteins for REG4 Gene

  • Protein details for REG4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BYZ8-REG4_HUMAN
    Recommended name:
    Regenerating islet-derived protein 4
    Protein Accession:
    Q9BYZ8
    Secondary Accessions:
    • Q8NER6
    • Q8NER7

    Protein attributes for REG4 Gene

    Size:
    158 amino acids
    Molecular mass:
    18230 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAM95599.1; Type=Miscellaneous discrepancy; Note=Aberrant splicing.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for REG4 Gene

    Alternative splice isoforms for REG4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for REG4 Gene

Proteomics data for REG4 Gene at MOPED

Post-translational modifications for REG4 Gene

  • Glycosylation at Asn 50
  • Modification sites at PhosphoSitePlus

Other Protein References for REG4 Gene

Antibody Products

No data available for DME Specific Peptides for REG4 Gene

Domains & Families for REG4 Gene

Suggested Antigen Peptide Sequences for REG4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BYZ8

UniProtKB/Swiss-Prot:

REG4_HUMAN :
  • Contains 1 C-type lectin domain.
Domain:
  • Contains 1 C-type lectin domain.
genes like me logo Genes that share domains with REG4: view

No data available for Gene Families for REG4 Gene

Function for REG4 Gene

Molecular function for REG4 Gene

UniProtKB/Swiss-Prot Function:
Calcium-independent lectin displaying mannose-binding specificity and able to maintain carbohydrate recognition activity in an acidic environment. May be involved in inflammatory and metaplastic responses of the gastrointestinal epithelium.
UniProtKB/Swiss-Prot Induction:
Up-regulated by mucosal injury from active Crohns disease or ulcerative colitis. Up-regulated in colorectal tumors. Up-regulated in epithelial cells at regenerating margins of peptic ulcers in the stomach and duodenum.

Gene Ontology (GO) - Molecular Function for REG4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 NOT calcium ion binding IDA 20692269
GO:2001065 mannan binding IDA 20692269
genes like me logo Genes that share ontologies with REG4: view
genes like me logo Genes that share phenotypes with REG4: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for REG4 Gene

Localization for REG4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for REG4 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for REG4 Gene COMPARTMENTS Subcellular localization image for REG4 gene
Compartment Confidence
extracellular 5
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for REG4 Gene

Pathways & Interactions for REG4 Gene

SuperPathways for REG4 Gene

No Data Available

Interacting Proteins for REG4 Gene

Gene Ontology (GO) - Biological Process for REG4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for REG4 Gene

Drugs & Compounds for REG4 Gene

(1) Drugs for REG4 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with REG4: view

Transcripts for REG4 Gene

Unigene Clusters for REG4 Gene

Regenerating islet-derived family, member 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for REG4 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b
SP1: -
SP2: - -
SP3: -

Relevant External Links for REG4 Gene

GeneLoc Exon Structure for
REG4
ECgene alternative splicing isoforms for
REG4

Expression for REG4 Gene

mRNA expression in normal human tissues for REG4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for REG4 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (x32.8), Pancreas (x13.5), and Colon - Transverse (x4.6).

Protein differential expression in normal tissues from HIPED for REG4 Gene

This gene is overexpressed in Fetal gut (52.2), Colon (7.1), and Pancreatic juice (7.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for REG4 Gene



SOURCE GeneReport for Unigene cluster for REG4 Gene Hs.660883

mRNA Expression by UniProt/SwissProt for REG4 Gene

Q9BYZ8-REG4_HUMAN
Tissue specificity: Highly expressed in the gastrointestinal tract including the duodenum, jejunum, ileum, ileocecum, appendix, descending colon, pancreas and small intestine. Weakly expressed in normal colon and stomach. Strongly expressed in most colorectal tumors than in normal colon. Preferentially expressed in mucinous tumors and in some cases neuro-endocrine tumors. Expressed in mucus-secreting cells and enterocyte-like cells. In small intestine expressed at the basal perinuclear zone of goblet cells.
genes like me logo Genes that share expression patterns with REG4: view

Protein tissue co-expression partners for REG4 Gene

- Elite partner

Primer Products

In Situ Assay Products

Orthologs for REG4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for REG4 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia REG4 35
  • 82.49 (n)
  • 71.52 (a)
REG4 36
  • 63 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LOC475818 35
  • 83.12 (n)
  • 75.95 (a)
-- 36
  • 75 (a)
OneToMany
-- 36
  • 76 (a)
OneToMany
-- 36
  • 63 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Reg4 35
  • 77.35 (n)
  • 66.67 (a)
Reg4 16
Reg4 36
  • 66 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia REG4 35
  • 99.79 (n)
  • 99.37 (a)
REG4 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Reg4 35
  • 77.71 (n)
  • 66.88 (a)
oppossum
(Monodelphis domestica)
Mammalia REG4 36
  • 67 (a)
OneToOne
chicken
(Gallus gallus)
Aves REG4 35
  • 51.75 (n)
  • 39.16 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100485485 35
  • 52.11 (n)
  • 46.84 (a)
Species with no ortholog for REG4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for REG4 Gene

ENSEMBL:
Gene Tree for REG4 (if available)
TreeFam:
Gene Tree for REG4 (if available)

Paralogs for REG4 Gene

Paralogs for REG4 Gene

(9) SIMAP similar genes for REG4 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with REG4: view

Variants for REG4 Gene

Sequence variations from dbSNP and Humsavar for REG4 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs34996202 - 119,798,503(+) GTTAT(G/T)GGAGC reference, missense
rs699778 -- 119,794,253(+) AGGGG(G/T)CTAGA utr-variant-3-prime
rs729233 -- 119,795,237(-) GTGGA(A/G)CTTTT intron-variant
rs729234 -- 119,795,212(-) CATTT(A/C)AAGTG intron-variant
rs947269 -- 119,804,513(-) TTGCC(A/G)TAGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for REG4 Gene

Variant ID Type Subtype PubMed ID
nsv524681 CNV Gain 19592680
nsv831215 CNV Gain 17160897
dgv93e1 CNV Complex 17122850
nsv428201 CNV Gain 18775914
dgv94e1 CNV Complex 17122850
nsv831226 CNV Gain+Loss 17160897

Variation tolerance for REG4 Gene

Residual Variation Intolerance Score: 81.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.53; 11.49% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for REG4 Gene

HapMap Linkage Disequilibrium report
REG4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for REG4 Gene

Disorders for REG4 Gene

MalaCards: The human disease database

(1) MalaCards diseases for REG4 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
ulcerative colitis
  • left-sided ulcerative colitis
- elite association - COSMIC cancer census association via MalaCards
Search REG4 in MalaCards View complete list of genes associated with diseases

Relevant External Links for REG4

Genetic Association Database (GAD)
REG4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
REG4
genes like me logo Genes that share disorders with REG4: view

No data available for UniProtKB/Swiss-Prot and Genatlas for REG4 Gene

Publications for REG4 Gene

  1. Reg IV, a new member of the regenerating gene family, is overexpressed in colorectal carcinomas. (PMID: 12455032) Violette S. … Lesuffleur T. (Int. J. Cancer 2003) 2 3 4 23 67
  2. The role of Reg IV gene and its encoding product in gastric carcinogenesis. (PMID: 19740514) Zheng H.C. … Takano Y. (Hum. Pathol. 2010) 3 23
  3. REG4 is associated with carcinogenesis in the 'intestinal' pathway of intraductal papillary mucinous neoplasms. (PMID: 19136934) Nakata K. … Tsuneyoshi M. (Mod. Pathol. 2009) 3 23
  4. Serum REG4 level is a predictive biomarker for the response to preoperative chemoradiotherapy in patients with pancreatic cancer. (PMID: 19546835) Eguchi H. … Nakagawa H. (Pancreas 2009) 3 23
  5. Reg IV is an independent prognostic factor for relapse in patients with clinically localized prostate cancer. (PMID: 18754868) Ohara S. … Yasui W. (Cancer Sci. 2008) 3 23

Products for REG4 Gene

Sources for REG4 Gene

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