Aliases for REG3A Gene
Aliases for REG3A Gene
- Regenerating Family Member 3 Alpha 2 3 5
- Regenerating Islet-Derived Protein III-Alpha 3 4
- Hepatointestinal Pancreatic Protein 3 4
- Regenerating Islet-Derived 3 Alpha 2 3
- Pancreatitis-Associated Protein 1 3 4
- Human Proislet Peptide 3 4
- Reg III-Alpha 3 4
- REG-3-Alpha 3 4
- HIP/PAP 3 4
- PAP1 3 4
- PAP 3 4
- HIP 3 4
- Regenerating Islet-Derived Protein 3-Alpha 3
External Ids for REG3A Gene
- HGNC: 8601
- Entrez Gene: 5068
- Ensembl: ENSG00000172016
- OMIM: 167805
- UniProtKB: Q06141
Previous HGNC Symbols for REG3A Gene
- PAP
Previous GeneCards Identifiers for REG3A Gene
- GC02M079296
- GC02M079384
- GC02M079119
Summaries for REG3A Gene
-
This gene encodes a pancreatic secretory protein that may be involved in cell proliferation or differentiation. It has similarity to the C-type lectin superfamily. The enhanced expression of this gene is observed during pancreatic inflammation and liver carcinogenesis. The mature protein also functions as an antimicrobial protein with antibacterial activity. Alternate splicing results in multiple transcript variants that encode the same protein.[provided by RefSeq, Nov 2014]
GeneCards Summary for REG3A Gene
REG3A (Regenerating Family Member 3 Alpha) is a Protein Coding gene. Diseases associated with REG3A include Pancreatitis and Acute Pancreatitis. Among its related pathways are Innate Immune System and Defensins. Gene Ontology (GO) annotations related to this gene include carbohydrate binding. An important paralog of this gene is REG3G.
UniProtKB/Swiss-Prot for REG3A Gene
-
Bactericidal C-type lectin which acts exclusively against Gram-positive bacteria and mediates bacterial killing by binding to surface-exposed carbohydrate moieties of peptidoglycan. Regulates keratinocyte proliferation and differentiation after skin injury via activation of EXTL3-PI3K-AKT signaling pathway.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for REG3A Gene
Genomics for REG3A Gene
GeneHancer (GH) Regulatory Elements for REG3A Gene
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH02I079159 | Promoter | 0.7 | EPDnew | 550.8 | +0.3 | 297 | 0.1 | CREB1 ATF2 | ENSG00000224879 REG3A GC02P079100 | |
GH02I079160 | Promoter | 0.5 | EPDnew | 550.8 | 0.0 | -19 | 0.1 | ENSG00000224879 REG3A PIR32625 GC02P079100 |
- Top Transcription factor binding sites by QIAGEN in the REG3A gene promoter:
Regulatory Element Products
Genomic Locations for REG3A Gene
- chr2:79,157,003-79,159,754
- (GRCh38/hg38)
- Size:
- 2,752 bases
- Orientation:
- Minus strand
- chr2:79,384,132-79,386,880
- (GRCh37/hg19)
Genomic View for REG3A Gene
- Cytogenetic band:
-
- 2p12 by Ensembl
- 2p12 by Entrez Gene
- 2p12 by HGNC


RefSeq DNA sequence for REG3A Gene
Proteins for REG3A Gene
-
Protein details for REG3A Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q06141-REG3A_HUMAN
- Recommended name:
- Regenerating islet-derived protein 3-alpha
- Protein Accession:
- Q06141
Protein attributes for REG3A Gene
- Size:
- 175 amino acids
- Molecular mass:
- 19395 Da
- Quaternary structure:
-
- Interacts with EXTL3.
Protein Expression for REG3A Gene
Post-translational modifications for REG3A Gene
- Proteolytic processing by trypsin removes an inhibitory N-terminal propeptide and is essential for peptidoglycan binding and antibacterial activity.
Other Protein References for REG3A Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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No data available for DME Specific Peptides for REG3A Gene
Domains & Families for REG3A Gene
Gene Families for REG3A Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Plasma proteins
- Predicted secreted proteins
- Transporters
Protein Domains for REG3A Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for REG3A Gene
Graphical View of Domain Structure for InterPro Entry
Q06141UniProtKB/Swiss-Prot:
REG3A_HUMAN :- The EPN motif is essential for recognition of the peptidoglycan carbohydrate backbone and for efficient bacterial killing with Glu-114 playing a key role in peptidoglycan binding and bactericidal activity.
- Domain:
-
- The EPN motif is essential for recognition of the peptidoglycan carbohydrate backbone and for efficient bacterial killing with Glu-114 playing a key role in peptidoglycan binding and bactericidal activity.
Function for REG3A Gene
Molecular function for REG3A Gene
- UniProtKB/Swiss-Prot Function:
- Bactericidal C-type lectin which acts exclusively against Gram-positive bacteria and mediates bacterial killing by binding to surface-exposed carbohydrate moieties of peptidoglycan. Regulates keratinocyte proliferation and differentiation after skin injury via activation of EXTL3-PI3K-AKT signaling pathway.
- UniProtKB/Swiss-Prot Induction:
- Appears in pancreatic juice after induction of pancreatic inflammation.
Phenotypes From GWAS Catalog for REG3A Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005515 | protein binding | IPI | 25416956 |
GO:0030246 | carbohydrate binding | TAS,IEA | -- |
GO:0042802 | identical protein binding | IPI | 24256734 |
Phenotypes for REG3A Gene
- MGI mutant phenotypes for REG3A:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for REG3A:
Animal Models for REG3A Gene
- MGI Knock Outs for REG3A:
-
- Reg3b tm1Lex
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miRNA for REG3A Gene
- miRTarBase miRNAs that target REG3A
-
- hsa-mir-203a-3p (MIRT790158)
- hsa-mir-2277-3p (MIRT790193)
- hsa-mir-4706 (MIRT790576)
- hsa-mir-4749-5p (MIRT790607)
- hsa-mir-4781-5p (MIRT790637)
- hsa-mir-6507-5p (MIRT790856)
- hsa-mir-6777-5p (MIRT790951)
- hsa-mir-6825-5p (MIRT790998)
- hsa-mir-6889-5p (MIRT791079)
- hsa-mir-7106-5p (MIRT791089)
- hsa-mir-766-5p (MIRT791122)
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-
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- Yeast expression
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-
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No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for REG3A Gene
Localization for REG3A Gene
Subcellular locations from UniProtKB/Swiss-Prot for REG3A Gene
- Secreted. Note=Found in the apical region of pancreatic acinar cells.
- Cytosol (2)
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005576 | extracellular region | TAS | -- |
GO:0005615 | extracellular space | TAS | 8997243 |
GO:0005737 | cytoplasm | TAS | 8997243 |
Pathways & Interactions for REG3A Gene
SuperPathway | Contained pathways | ||
---|---|---|---|
1 | Innate Immune System |
.61
|
|
2 | Defensins |
Pathways by source for REG3A Gene
3 Reactome pathways for REG3A Gene
Interacting Proteins for REG3A Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0006953 | acute-phase response | IEA | -- |
GO:0006954 | inflammatory response | IEA | -- |
GO:0007157 | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules | TAS | 8997243 |
GO:0007275 | multicellular organism development | TAS | 8997243 |
GO:0008283 | cell proliferation | TAS | 8997243 |
No data available for SIGNOR curated interactions for REG3A Gene
Transcripts for REG3A Gene
mRNA/cDNA for REG3A Gene
- (3) REFSEQ mRNAs :
- (8) Additional mRNA sequences :
- (168) Selected AceView cDNA sequences:
- (5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for REG3A Gene
CRISPR Products
-
OriGene CRISPR knockouts for REG3A
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-
Vectors and viruses for KO, Activation, Repression, and more
-
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-
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for REG3A
- Applied Biological Materials Clones for REG3A
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SP1: | - | - | |||||||||||||||
SP2: | - | ||||||||||||||||
SP3: | - |
Expression for REG3A Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Pancreas (Endocrine System)
- Duct Cells Pancreatic Ducts
- Islets of Langerhans
-
Testis (Reproductive System)
- Sertoli cells Seminiferous Tubules
-
Epithelial Cells
- Duct Cells Pancreatic Ducts
- Neural Tube (Nervous System)
- Intestine (Gastrointestinal Tract)
-
Colon (Gastrointestinal Tract)
mRNA differential expression in normal tissues according to GTEx for REG3A Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for REG3A Gene
NURSA nuclear receptor signaling pathways regulating expression of REG3A Gene:
REG3ASOURCE GeneReport for Unigene cluster for REG3A Gene:
Hs.567312mRNA Expression by UniProt/SwissProt for REG3A Gene:
Q06141-REG3A_HUMANEvidence on tissue expression from TISSUES for REG3A Gene
- Intestine(4.9)
- Pancreas(4.8)
- Stomach(4.6)
- Liver(4.3)
- Blood(4.2)
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-
OriGene qPCR primer pairs for REG3A
-
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No data available for Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for REG3A Gene
Orthologs for REG3A Gene
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | REG3A 33 34 |
|
||
mouse (Mus musculus) |
Mammalia | Reg3b 33 16 34 |
|
||
Reg3g 34 |
|
ManyToMany | |||
Reg3a 34 |
|
ManyToMany | |||
dog (Canis familiaris) |
Mammalia | REG3A 34 34 |
|
ManyToMany | |
rat (Rattus norvegicus) |
Mammalia | Reg3b 33 |
|
||
cow (Bos Taurus) |
Mammalia | PTP 34 |
|
ManyToMany | |
REG3G 34 |
|
ManyToMany | |||
oppossum (Monodelphis domestica) |
Mammalia | -- 34 |
|
ManyToMany | |
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
chicken (Gallus gallus) |
Aves | REG4 34 |
|
OneToMany | |
lizard (Anolis carolinensis) |
Reptilia | -- 34 |
|
ManyToMany | |
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany | |||
-- 34 |
|
ManyToMany |
- Species where no ortholog for REG3A was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for REG3A Gene
Variants for REG3A Gene
SNP ID | Clin | Chr 02 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs1000304866 | -- | 79,160,886(-) | C/T | upstream_transcript_variant | |
rs1000866442 | -- | 79,159,323(-) | A/G | intron_variant | |
rs1001329113 | -- | 79,156,528(-) | C/T | downstream_transcript_variant | |
rs1002243112 | -- | 79,157,504(-) | A/C | intron_variant | |
rs1002337856 | -- | 79,157,867(-) | G/A | intron_variant |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv1135e212 | CNV | loss | 25503493 |
esv3584761 | CNV | loss | 24956385 |
esv3892770 | CNV | gain | 25118596 |
nsv522260 | CNV | gain | 19592680 |
Additional Variant Information for REG3A Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- REG3A
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for REG3A Gene
Disorders for REG3A Gene
Disorder | Aliases | PubMed IDs |
---|---|---|
pancreatitis |
|
|
acute pancreatitis |
|
|
cystic fibrosis |
|
|
pancreatic cancer |
|
|
inflammatory bowel disease |
|
Additional Disease Information for REG3A
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for UniProtKB/Swiss-Prot and Genatlas for REG3A Gene
Publications for REG3A Gene
- Molecular cloning, genomic organization, and chromosomal localization of the human pancreatitis-associated protein (PAP) gene. (PMID: 8188210) Dusetti NJ … Iovanna JL (Genomics 1994) 2 3 4 22 58
- Structural organization and chromosomal localization of a human gene (HIP/PAP) encoding a C-type lectin overexpressed in primary liver cancer. (PMID: 8076648) Lasserre C … Brechot C (European journal of biochemistry 1994) 3 4 22 58
- Cloning and tissue-specific expression of cDNAs for the human and mouse homologues of rat pancreatitis-associated protein (PAP). (PMID: 7679928) Itoh T … Teraoka H (Biochimica et biophysica acta 1993) 3 4 22 58
- A novel gene (HIP) activated in human primary liver cancer. (PMID: 1325291) Lasserre C … Bréchot C (Cancer research 1992) 3 4 22 58
- Human pancreatitis-associated protein. Messenger RNA cloning and expression in pancreatic diseases. (PMID: 1469087) Orelle B … Iovanna JL (The Journal of clinical investigation 1992) 3 4 22 58
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for REG3A
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- GeneTex REG3A antibody for REG3A
- Search GeneTex for Proteins for REG3A
- ViGene Biosciences adenoviral particle packaged cDNA for REG3A gene
- ViGene Biosciences lentiviral particle packaged cDNA for REG3A gene
- ViGene Biosciences ready-to-package AAV shRNAs for REG3A gene
- Search ViGene Biosciences for REG3A
- Santa Cruz Biotechnology (SCBT) Antibodies for REG3A
- Search Santa Cruz Biotechnology (SCBT) for REG3A siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for REG3A
- Horizon Cell Lines for REG3A
- genomics-online: cdna clones - Search results for 143 available REG3A gene related products
- Overview of 143 available REG3A gene related products
- orf clones - Search results for 143 available REG3A gene related products
- Overview of 143 available REG3A gene related products
- genomics-online: gRNA clones - Search results for 143 available REG3A gene related products
- Overview of 143 available REG3A gene related products
- genomics-online: primer clones - Search results for 143 available REG3A gene related products
- Overview of 143 available REG3A gene related products
- genomics-online: shRNA clones - Search results for 143 available REG3A gene related products
- Overview of 143 available REG3A gene related products
Sources for REG3A Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew