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Aliases for REG1P Gene

Subcategory (RNA class) for REG1P Gene

lncRNA

Aliases for REG1P Gene

  • Regenerating Islet-Derived 1 Pseudogene 2 3
  • Rat Regenerating Islet-Derived-Like, Human Homolog (Pancreatic Stone Protein-Like, Pancreatic Thread Protein-Like) 2
  • Regenerating Islet-Derived-Like, Human Homolog (Pancreatic Stone Protein-Like, Pancreatic Thread Protein-Like) 3
  • Regenerating Islet-Derived-Like, Pancreatic Stone Protein-Like, Pancreatic Thread Protein-Like (Rat) 2
  • REGL 3
  • RS 3

External Ids for REG1P Gene

ORGUL Members for REG1P Gene

Previous HGNC Symbols for REG1P Gene

  • REGL

Previous GeneCards Identifiers for REG1P Gene

  • GC02M079218
  • GC02M079363

Summaries for REG1P Gene

GeneCards Summary for REG1P Gene

REG1P (Regenerating Islet-Derived 1 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for REG1P Gene

Genomics for REG1P Gene

Regulatory Elements for REG1P Gene

Genomic Location for REG1P Gene

Chromosome:
2
Start:
79,135,503 bp from pter
End:
79,138,427 bp from pter
Size:
2,925 bases
Orientation:
Minus strand

Genomic View for REG1P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for REG1P Gene

Proteins for REG1P Gene

Post-translational modifications for REG1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for REG1P Gene

Domains & Families for REG1P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for REG1P Gene

Function for REG1P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for REG1P Gene

Localization for REG1P Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for REG1P Gene COMPARTMENTS Subcellular localization image for REG1P gene
Compartment Confidence
vacuole 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for REG1P Gene

Pathways & Interactions for REG1P Gene

SuperPathways for REG1P Gene

No Data Available

Interacting Proteins for REG1P Gene

Gene Ontology (GO) - Biological Process for REG1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for REG1P Gene

Drugs & Compounds for REG1P Gene

No Compound Related Data Available

Transcripts for REG1P Gene

mRNA/cDNA for REG1P Gene

Unigene Clusters for REG1P Gene

Regenerating islet-derived 1 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for REG1P Gene

No ASD Table

Relevant External Links for REG1P Gene

GeneLoc Exon Structure for
REG1P
ECgene alternative splicing isoforms for
REG1P

Expression for REG1P Gene

mRNA expression in normal human tissues for REG1P Gene

mRNA differential expression in normal tissues according to GTEx for REG1P Gene

This gene is overexpressed in Pancreas (x52.8).

SOURCE GeneReport for Unigene cluster for REG1P Gene Hs.584797

genes like me logo Genes that share expression patterns with REG1P: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for REG1P Gene

Orthologs for REG1P Gene

Evolution for REG1P Gene

ENSEMBL:
Gene Tree for REG1P (if available)
TreeFam:
Gene Tree for REG1P (if available)

No data available for Orthologs for REG1P Gene

Paralogs for REG1P Gene

No data available for Paralogs for REG1P Gene

Variants for REG1P Gene

Sequence variations from dbSNP and Humsavar for REG1P Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs10496213 -- 79,135,028(+) TTTAT(G/T)ATTCA downstream-variant-500B
rs11678299 -- 79,137,248(+) TCATG(C/G)TCTTC nc-transcript-variant
rs11684223 -- 79,137,444(+) GATCC(C/T)ATAGG nc-transcript-variant
rs13400140 -- 79,139,419(+) AAATA(A/G)CCTTA upstream-variant-2KB
rs17016388 -- 79,136,021(+) ATCCA(A/G)TGTCC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for REG1P Gene

Variant ID Type Subtype PubMed ID
nsv522260 CNV Gain 19592680
esv2661607 CNV Deletion 23128226

Relevant External Links for REG1P Gene

HapMap Linkage Disequilibrium report
REG1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for REG1P Gene

Disorders for REG1P Gene

Relevant External Links for REG1P

Genetic Association Database (GAD)
REG1P
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
REG1P
genes like me logo Genes that share disorders with REG1P: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for REG1P Gene

Publications for REG1P Gene

  1. Human regeneration protein/lithostathine genes map to chromosome 2p12. (PMID: 8333731) Gharib B. … Berge-lefranc J.L. (Ann. Hum. Genet. 1993) 2 67
  2. Molecular cloning, expression and chromosomal localization of a novel human REG family gene, REG III. (PMID: 15556304) Nata K. … Okamoto H. (Gene 2004) 67
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67
  5. Human REG family genes are tandemly ordered in a 95-kilobase region of chromosome 2p12. (PMID: 8549770) Miyashita H. … Okamoto H. (FEBS Lett. 1995) 67

Products for REG1P Gene

Sources for REG1P Gene

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