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Aliases & Descriptions for RDX
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DFNB24 2, 5 | | radixin 2 |
| | | Descriptions |
|---|
| deafness, autosomal recessive 24 1 |
|
| | Search outside databases for aliases for RDX genePrevious GC identifers: GC11M112371 GC11M111571 GC11M110134 GC11M109637 |
Summaries for RDX(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for RDX: Radixin is a cytoskeletal protein that may be important in linking actin to the plasma membrane. It is highly similar in sequence to both ezrin and moesin. The radixin gene has been localized by fluorescence in situ hybridization to 11q23. A truncated version representing a pseudogene (RDXP2) was assigned to Xp21.3. Another pseudogene that seemed to lack introns (RDXP1) was mapped to 11p by Southern and PCR analyses. [provided by RefSeq] UniProtKB/Swiss-Prot: RADI_HUMAN, P35241Function: Probably plays a crucial role in the binding of the barbed end of actin filaments to the plasma membraneGene Wiki entry for RDX (Radixin) |
Genomic Location for RDX
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the RDX gene 
Entrez Gene cytogenetic band: 11q23 Ensembl cytogenetic band: 11q22.3 HGNC cytogenetic band: 11q23RDX Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11M109605:
(about GC identifiers)
Start:
|
109,571,496 bp from pter |
End:
|
109,672,647 bp from pter |
Size:
|
101,152 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000011.8 NT_033899.7
| Proteins for RDX
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: RADI_HUMAN, P35241 (See
protein sequence)Recommended Name: Radixin Size: 583 amino acids; 68564 Da
Subunit: Binds SLC9A3R1. Interacts with NHERF1, NHERF2, LAYN, MME/NEP and ICAM2 (By similarity)
Subcellular location: Cell membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm, cytoskeleton. Note=Highly concentrated in the undercoat of the cell-to-cell adherens junction and the cleavage furrow in the interphase and mitotic phase, respectively
Secondary accessions: Q86Y61Post-translational modifications:
Phosphorylated by tyrosine-protein kinases (By similarity)1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002897.1
ENSEMBL proteins: ENSP00000384136 ENSP00000342830
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: RDX 
5/9 Gene Ontology (GO) cellular component terms (links to tree view) (see all 9
): About this table
Antibodies for RDX: Assays for RDX: | Protein
Domains/ Families for RDX(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P35241
ProtoNet protein and cluster: P35241 2 Blocks protein families: IPB000299 Band 4.1 domain IPB000798 ERM family signature
UniProtKB/Swiss-Prot: RADI_HUMAN, P35241Domain: The N-terminal domain interacts with the C-terminal domain of LAYN. An interdomain interaction between its N-terminal and C-terminal domains inhibits its ablilty to bind LAYN. In the presence of acidic phospholipids, the interdomain interaction is inhibited and this enhances binding to LAYN (By similarity)Similarity: Contains 1 FERM domain | Gene Function for RDX
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002906
Applied Biosystems Silencer® siRNAs for RDX
Sigma-Aldrich siRNA for RDX  Sigma-Aldrich shRNA Panels and shRNA for RDX  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002906                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002906                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002906 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002906
UniProtKB/Swiss-Prot: RADI_HUMAN, P35241Function: Probably plays a crucial role in the binding of the barbed end of actin filaments to the plasma membraneGenatlas biochemistry entry for RDX:radixin,actin capping protein,ezrin/moesin/radixin-like (ERM) family member,responding and participating in reorganization of membrane-cytoplasmic interactions,highly expressed in the undercoat of the adherens junction,involved in regulation of linkage of the cytoskeleton to the plasma membrane,deleted in lymphocytes,monocytes,neutrophils and platelet,not sensitive to capain5 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Rdx):
1 Gene Ontology (GO) molecular function term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003779 | actin binding |
IEA | -- | About this table | Pathways & Interactions for RDX
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for RDX (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for RDX 
5/28 Interacting proteins for RDX (ENSP000003428303 P352412) via UniProtKB, MINT, and/or STRING (see all 28
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007605 | sensory perception of sound |
IEA | -- | | GO:0030033 | microvillus assembly |
IEA | -- | | GO:0045176 | apical protein localization |
IEA | -- | | GO:0051016 | barbed-end actin filament capping |
IEA | -- | About this table
|
Drugs & Compounds for RDX(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for RDX 9 Novoseek chemical compound relationships for RDX gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| threonine |
43.26 |
7 |
11387207 (1), 11502006 (1), 9918767 (1), 16394012 (1) (see all 7) |
| tyrosine |
36.53 |
11 |
11587846 (1), 15277531 (1), 17024180 (1), 1382070 (1) (see all 10) |
| gdp |
23.33 |
3 |
9681826 (2), 9287351 (1) |
| phosphatidylinositol |
21.01 |
2 |
16054017 (1), 17827228 (1) |
| phosphotyrosine |
16.98 |
2 |
1382070 (1), 12535520 (1) |
| calcium |
3.44 |
1 |
18290763 (1) |
| lipid |
0.00 |
1 |
17982024 (1), 17538024 (1) |
| zinc |
0.00 |
1 |
14550572 (1) |
| gtp |
0.00 |
2 |
9681826 (2) |
About this table
2 PharmGKB drug compound relationships for RDX geneAbout this table
|
Transcripts for RDX(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002906
Sigma-Aldrich siRNA for RDX  Sigma-Aldrich shRNA Panels and shRNA for RDX  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002906 REFSEQ mRNAs for RDX gene: NM_002906.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002906               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002906                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002906                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002906  Additional cDNA sequence: AF086024.1 AK295075.1 AK312903.1 AK316061.1 BC002626.2 BC020751.1 BC029467.1 BC047109.1 BC127248.1 BX648536.1 DQ916738.1 DQ916739.1 DQ916740.1 DQ916741.1 DQ916742.1 L02320.1 16 DOTS entries: DT.97803338 DT.101974122 DT.215749 DT.101981317 DT.404826 DT.100825101 DT.100825093 DT.95158114 DT.97788679 DT.100825095 DT.101955213 DT.215863 DT.40197717 DT.91721350 DT.95132655 DT.99962028 24/308 AceView cDNA sequences (see all 308
):AI242238 BM973545 BU078898 BC002626 BQ447711 AI351747 T16402 BC020751 AI609818 BE138912 AI373255 BQ632112 AW183680 BX501284 AI693697 BQ010341 AI365124 AA430011 T16589 CK300704 BE350211 BU079182 AW136407 AA281544
highest scoring ESTs for RDX:AA113430 AU077254 AU119270 AU134152 AW025631 BC002626 BC047109 BE391924 BG528339 BG538628 Unigene Cluster for RDX: Radixin Hs.263671 [show with all ESTs]Unigene Representative Sequence: NM_002906
GeneLoc Exon Structure
5/10 Alternative Splicing Database (ASD) splice patterns (SP) for RDX (see all 10
)
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | · | 7c | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13a | · | 13b | ^ | 14 | ^ | 15a | · | 15b | · | 15c | ^ | 16 | ^ | 17 | ^ | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |
| SP5: | |   | - |   | - |   | - |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 18 | ^ | 19 | |
| SP1: | |   | |   | |
| SP2: | |   | |   | |
| SP3: | |   | |   | |
| SP4: | |   | |   | |
| SP5: | |   | |   |
About this scheme
ECgene alternative splicing isoforms for RDX
2 Ensembl transcripts including schematic representations: ENST00000405097
ENST00000343115
|
Expression for RDX
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| RDX expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for RDX
1 / 2 / 3 11 probe-sets matching RDX gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GCAGATAAGA
SOURCE GeneReport for Unigene cluster: Hs.263671
Expression variation in blood from EXPOLDB for RDX |
Orthologs for RDX
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for RDX gene from 5/13 species (see all 13
)
About this table Species with no ortholog for RDX
ENSEMBL Gene Tree for RDX | Paralogs for RDX(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for RDX gene
- MSN2 EZR2
Pseudogenes
- 1 related pseudogene
|
SNPs/Variants for RDX(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for RDX (up to first 250kb)
|
Disorders & Mutations for RDX
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 179410 disorders: 611022 UniProtKB/Swiss-Prot: RADI_HUMAN, P35241
Defects in RDX are the cause of non-syndromic sensorineural deafness autosomal recessive type 24 (DFNB24) [MIM:611022]. DFNB24 is a form of sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information10/14 Novoseek disease relationships for RDX gene (see all 14
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| neurofibromatosis type 2 |
88.48 |
9 |
9553042 (1), 15467741 (1), 8012352 (1), 11438984 (1) (see all 9) |
| meningioma |
61.75 |
4 |
18190852 (1), 8586465 (1), 17640904 (1), 11368764 (1) |
| schwannoma |
57.54 |
4 |
9403715 (3), 11368764 (1) |
| neuroma acoustic |
34.95 |
1 |
8586465 (1) |
| tumors |
33.03 |
25 |
11092524 (2), 9553042 (1), 15467741 (1), 16054017 (1) (see all 22) |
| metastasis |
9.17 |
3 |
19152423 (1), 17874463 (1) |
| breast carcinoma |
2.04 |
2 |
18190852 (1), 17640904 (1) |
| dysplasia |
0.00 |
1 |
17910583 (1) |
| cancer lung |
0.00 |
2 |
18190852 (1), 17640904 (1) |
| cancer |
0.00 |
4 |
11092524 (1), 15908786 (1), 19152423 (1) |
About this table
1 PharmGKB disease relationship for RDX geneAbout this table
Human Gene Mutation Database: RDX
|
Medical News for RDX(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for RDX (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/250 PubMed articles for RDX gene (see all 250
):- Mutations of the RDX gene cause nonsyndromic hearing loss at the DFNB24 locus. (PubMed id 17226784)1, 2, 3, 4 Khan S.Y....Riazuddin S. (2007)
- Molecular cloning, cDNA sequence, and chromosomal assignment of the human radixin gene and two dispersed pseudogenes. (PubMed id 8486357)1, 2, 3, 4 Wilgenbus K.K.... Furthmayr H. (1993)
- NHE-RF, a regulatory cofactor for Na(+)-H+ exchange, is a common interactor for merlin and ERM (MERM) proteins. (PubMed id 9430655)1, 3, 4 Murthy A....Ramesh V. (1998)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Disturbed colocalization of multidrug resistance protein 2 and radixin in human cholestatic liver diseases. (PubMed id 17725603)1, 3 Kojima H....Fukui H. (2008)
- Ezrin and radixin both regulate the apical membrane localization of ABCC2 (MRP2) in human intestinal epithelial Caco-2 cells. (PubMed id 17825285)1, 3 Yang Q....Sugiyama Y. (2007)
- Differential expression and distribution of ezrin, radixin and moesin in human natural killer cells. (PubMed id 12385025)1, 3 Ramoni C....Fais S. (2002)
- Changes in the expression and localization of hepatocellular transporters and radixin in primary biliary cirrhosis. (PubMed id 14568249)1, 3 Kojima H....Keppler D. (2003)
- Interaction of radixin with Rho small G protein GDP/GTP exchange protein Dbl. (PubMed id 9681826)1, 3 Takahashi K....Takai Y. (1998)
- A gene family consisting of ezrin, radixin and moesin. Its specific localization at actin filament/plasma membrane association sites. (PubMed id 1429901)1, 3 Sato N....Tsukita S. (1992)
|
Search for RDX
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing RDX
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing RDX
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RDX(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for RDX(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for RDX:

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| Antibodies & Assays for RDX  (Radixin) |
| | | | Search Tocris compounds for RDX |
|
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Incremental update: 13 Oct 2009
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