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Aliases for RDH10 Gene

Aliases for RDH10 Gene

  • Retinol Dehydrogenase 10 (All-Trans) 2 3
  • Short Chain Dehydrogenase/Reductase Family 16C Member 4 3 4
  • SDR16C4 3 4
  • Short Chain Dehydrogenase/Reductase Family 16C, Member 4 3
  • Short Chain Dehydrogenase/Reductase Family 16C 2
  • Retinol Dehydrogenase 10 3
  • EC 1.1.1.300 4
  • EC 1.1.1.n2 63
  • Member 4 2
  • EC 1.1.1 63

External Ids for RDH10 Gene

Summaries for RDH10 Gene

Entrez Gene Summary for RDH10 Gene

  • This gene encodes a retinol dehydrogenase, which converts all-trans-retinol to all-trans-retinal, with preference for NADP as a cofactor. Studies in mice suggest that this protein is essential for synthesis of embryonic retinoic acid and is required for limb, craniofacial, and organ development. [provided by RefSeq, Dec 2011]

GeneCards Summary for RDH10 Gene

RDH10 (Retinol Dehydrogenase 10 (All-Trans)) is a Protein Coding gene. Diseases associated with RDH10 include fundus albipunctatus. Among its related pathways are Signaling by GPCR and Disease. GO annotations related to this gene include retinol dehydrogenase activity and NADP-retinol dehydrogenase activity. An important paralog of this gene is HSD17B11.

UniProtKB/Swiss-Prot for RDH10 Gene

  • Retinol dehydrogenase with a clear preference for NADP. Converts all-trans-retinol to all-trans-retinal. Has no detectable activity towards 11-cis-retinol, 9-cis-retinol and 13-cis-retinol.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RDH10 Gene

Genomics for RDH10 Gene

Genomic Location for RDH10 Gene

Start:
73,294,602 bp from pter
End:
73,325,285 bp from pter
Size:
30,684 bases
Orientation:
Plus strand

Genomic View for RDH10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RDH10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RDH10 Gene

Regulatory Elements for RDH10 Gene

Proteins for RDH10 Gene

  • Protein details for RDH10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IZV5-RDH10_HUMAN
    Recommended name:
    Retinol dehydrogenase 10
    Protein Accession:
    Q8IZV5
    Secondary Accessions:

    Protein attributes for RDH10 Gene

    Size:
    341 amino acids
    Molecular mass:
    38087 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RDH10 Gene

Proteomics data for RDH10 Gene at MOPED

Post-translational modifications for RDH10 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys319

Other Protein References for RDH10 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

Domains for RDH10 Gene

Gene Families for RDH10 Gene

HGNC:
  • SDRC3 :Short chain dehydrogenase/reductase superfamily / Classical SDR fold cluster 3

Suggested Antigen Peptide Sequences for RDH10 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IZV5

UniProtKB/Swiss-Prot:

RDH10_HUMAN
Family:
  • Belongs to the short-chain dehydrogenases/reductases (SDR) family.:
    • Q8IZV5
genes like me logo Genes that share domains with RDH10: view

Function for RDH10 Gene

Molecular function for RDH10 Gene

UniProtKB/Swiss-Prot CatalyticActivity: All-trans-retinol + NADP(+) = all-trans-retinal + NADPH.
UniProtKB/Swiss-Prot Function: Retinol dehydrogenase with a clear preference for NADP. Converts all-trans-retinol to all-trans-retinal. Has no detectable activity towards 11-cis-retinol, 9-cis-retinol and 13-cis-retinol.

Enzyme Numbers (IUBMB) for RDH10 Gene

Gene Ontology (GO) - Molecular Function for RDH10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004745 retinol dehydrogenase activity IDA 12407145
GO:0016491 oxidoreductase activity --
GO:0052650 NADP-retinol dehydrogenase activity IEA --
genes like me logo Genes that share ontologies with RDH10: view
genes like me logo Genes that share phenotypes with RDH10: view

Animal Models for RDH10 Gene

MGI Knock Outs for RDH10:

miRNA for RDH10 Gene

miRTarBase miRNAs that target RDH10

No data available for Transcription Factor Targeting and HOMER Transcription for RDH10 Gene

Localization for RDH10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RDH10 Gene

Microsome membrane; Single-pass membrane protein. Endoplasmic reticulum membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RDH10 Gene COMPARTMENTS Subcellular localization image for RDH10 gene
Compartment Confidence
endoplasmic reticulum 5
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for RDH10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 NOT nucleus IDA 19458327
GO:0005737 cytoplasm IDA 19458327
GO:0005789 endoplasmic reticulum membrane TAS --
GO:0016020 membrane --
GO:0016021 integral component of membrane IDA 19458327
genes like me logo Genes that share ontologies with RDH10: view

Pathways for RDH10 Gene

genes like me logo Genes that share pathways with RDH10: view

UniProtKB/Swiss-Prot Q8IZV5-RDH10_HUMAN

  • Pathway: Cofactor metabolism; retinol metabolism

Interacting Proteins for RDH10 Gene

Gene Ontology (GO) - Biological Process for RDH10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001523 retinoid metabolic process TAS --
GO:0001656 metanephros development IEA --
GO:0001701 in utero embryonic development IEA --
GO:0002138 retinoic acid biosynthetic process IEA --
GO:0007601 visual perception IDA 12407145
genes like me logo Genes that share ontologies with RDH10: view

Compounds for RDH10 Gene

(3) HMDB Compounds for RDH10 Gene

Compound Synonyms Cas Number PubMed IDs
Glucosylceramide (d18:1/20:0)
  • 1-O-b-D-glucopyranosyl-Ceramide
85305-87-9
NADP
  • Adenine-nicotinamide dinucleotide phosphate
53-59-8
NADPH
  • 2'-(dihydrogen phosphate) 5'-(trihydrogen pyrophosphate) Adenosine 5'-ester with 1,4-dihydro-1-b-D-ribofuranosylnicotinamide
53-57-6

(2) Novoseek inferred chemical compound relationships for RDH10 Gene

Compound -log(P) Hits PubMed IDs
vitamin a 77 14
retinoic acid 66.4 6
genes like me logo Genes that share compounds with RDH10: view

Transcripts for RDH10 Gene

Unigene Clusters for RDH10 Gene

Retinol dehydrogenase 10 (all-trans):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RDH10 Gene

No ASD Table

Relevant External Links for RDH10 Gene

GeneLoc Exon Structure for
RDH10
ECgene alternative splicing isoforms for
RDH10

Expression for RDH10 Gene

mRNA expression in normal human tissues for RDH10 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RDH10 Gene

SOURCE GeneReport for Unigene cluster for RDH10 Gene Hs.244940

mRNA Expression by UniProt/SwissProt for RDH10 Gene

Q8IZV5-RDH10_HUMAN
Tissue specificity: Detected in retina, kidney, liver, small intestine, placenta, lung, heart and skeletal muscle.
genes like me logo Genes that share expressions with RDH10: view

No data available for mRNA differential expression in normal tissues for RDH10 Gene

Orthologs for RDH10 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RDH10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RDH10 35
  • 99.71 (n)
  • 100 (a)
RDH10 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RDH10 35
  • 93.55 (n)
  • 100 (a)
RDH10 36
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RDH10 35
  • 95.41 (n)
  • 100 (a)
RDH10 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rdh10 35
  • 92.28 (n)
  • 98.83 (a)
Rdh10 16
Rdh10 36
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RDH10 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rdh10 35
  • 92.57 (n)
  • 99.41 (a)
chicken
(Gallus gallus)
Aves RDH10 35
  • 84.37 (n)
  • 92.33 (a)
RDH10 36
  • 93 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RDH10 36
  • 91 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.24399 35
tropical clawed frog
(Silurana tropicalis)
Amphibia rdh10 35
  • 80.55 (n)
  • 88.86 (a)
Str.6763 35
zebrafish
(Danio rerio)
Actinopterygii rdh10 35
rdh10a 35
  • 74.63 (n)
  • 79.65 (a)
rdh10a 36
  • 80 (a)
OneToMany
rdh10b 36
  • 77 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG15629 36
  • 35 (a)
ManyToMany
CG9265 36
  • 27 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea dhs-29 36
  • 20 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 36
  • 23 (a)
ManyToMany
TDA5 36
  • 20 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3112 36
  • 45 (a)
OneToOne
Species with no ortholog for RDH10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RDH10 Gene

ENSEMBL:
Gene Tree for RDH10 (if available)
TreeFam:
Gene Tree for RDH10 (if available)

Paralogs for RDH10 Gene

Paralogs for RDH10 Gene

Selected SIMAP similar genes for RDH10 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with RDH10: view

Variants for RDH10 Gene

Sequence variations from dbSNP and Humsavar for RDH10 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs2272770 -- 73,297,892(+) GCAGT(C/T)ACTTC intron-variant
rs2925450 -- 73,301,038(-) agaaT(A/T)GAGTT intron-variant
rs2925454 -- 73,302,285(+) ACACC(A/C)AGTAC intron-variant
rs2925455 -- 73,305,424(+) TATTA(A/C)TAGCA intron-variant
rs3215435 -- 73,297,619(+) CCCCG(-/G)CCACC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RDH10 Gene

Variant ID Type Subtype PubMed ID
esv2737154 CNV Deletion 23290073
nsv891012 CNV Loss 21882294

Relevant External Links for RDH10 Gene

HapMap Linkage Disequilibrium report
RDH10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RDH10 Gene

Disorders for RDH10 Gene

(1) MalaCards Diseases for RDH10 Gene

Search for RDH10 Gene in MalaCards »

(1) University of Copenhagen DISEASES for RDH10 Gene

Relevant External Links for RDH10

Genetic Association Database (GAD)
RDH10
genes like me logo Genes that share disorders with RDH10: view

No data available for UniProtKB/Swiss-Prot for RDH10 Gene

Publications for RDH10 Gene

  1. Cloning and characterization of a novel all-trans retinol short-chain dehydrogenase/reductase from the RPE. (PMID: 12407145) Wu B.X. … Ma J.-X. (Invest. Ophthalmol. Vis. Sci. 2002) 2 3 4 23
  2. Genomic organization and transcription of the human retinol dehydrogenase 10 (RDH10) gene. (PMID: 14596915) Picozzi P. … Ginelli E. (FEBS Lett. 2003) 3 4 23
  3. The 11-cis-retinol dehydrogenase activity of RDH10 and its interaction with visual cycle proteins. (PMID: 19458327) Farjo K.M. … Ma J.X. (Invest. Ophthalmol. Vis. Sci. 2009) 3 23
  4. Kinetic analysis of human enzyme RDH10 defines the characteristics of a physiologically relevant retinol dehydrogenase. (PMID: 18502750) Belyaeva O.V. … Kedishvili N.Y. (J. Biol. Chem. 2008) 3 23
  5. Characterization of key residues and membrane association domains in retinol dehydrogenase 10. (PMID: 19102727) Takahashi Y. … Ma J.X. (Biochem. J. 2009) 3 23

Products for RDH10 Gene

Sources for RDH10 Gene

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