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Aliases for RD3L Gene

Aliases for RD3L Gene

  • Retinal Degeneration 3-Like 2 3
  • Retinal Degeneration Protein 3-Like 3 4
  • TDRD9 Antisense 1 2 3
  • TDRD9 Antisense RNA 1 (Non-Protein Coding) 3
  • Protein RD3-Like 3
  • TDRD9-AS1 3
  • TDRD9AS1 3

External Ids for RD3L Gene

Previous HGNC Symbols for RD3L Gene

  • TDRD9-AS1

Previous GeneCards Identifiers for RD3L Gene

  • GC14M104410

Summaries for RD3L Gene

GeneCards Summary for RD3L Gene

RD3L (Retinal Degeneration 3-Like) is a Protein Coding gene. An important paralog of this gene is RD3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RD3L Gene

Genomics for RD3L Gene

Genomic Location for RD3L Gene

Start:
103,940,426 bp from pter
End:
103,942,308 bp from pter
Size:
1,883 bases
Orientation:
Minus strand

Genomic View for RD3L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RD3L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RD3L Gene

No data available for Regulatory Elements for RD3L Gene

Proteins for RD3L Gene

  • Protein details for RD3L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DJH9-RD3L_HUMAN
    Recommended name:
    Protein RD3-like
    Protein Accession:
    P0DJH9
    Secondary Accessions:

    Protein attributes for RD3L Gene

    Size:
    198 amino acids
    Molecular mass:
    23209 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RD3L Gene

Proteomics data for RD3L Gene at MOPED

Post-translational modifications for RD3L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RD3L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RD3L Gene

Domains for RD3L Gene

Protein Domains for RD3L Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RD3L: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RD3L Gene

Function for RD3L Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RD3L Gene

Localization for RD3L Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RD3L Gene

Pathways for RD3L Gene

SuperPathways for RD3L Gene

No Data Available

Interacting Proteins for RD3L Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000455434%0d%0a9606.ENSP00000270708%0d%0a
Selected Interacting proteins: ENSP00000455434 for RD3L Gene via STRING

Symbol External ID(s) Details
WRAP73

Gene Ontology (GO) - Biological Process for RD3L Gene

None

No data available for Pathways by source for RD3L Gene

Transcripts for RD3L Gene

mRNA/cDNA for RD3L Gene

(0) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RD3L Gene

Retinal degeneration 3-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RD3L Gene

No ASD Table

Relevant External Links for RD3L Gene

GeneLoc Exon Structure for
RD3L
ECgene alternative splicing isoforms for
RD3L

Expression for RD3L Gene

mRNA expression in normal human tissues for RD3L Gene

mRNA differential expression in normal tissues according to GTEx for RD3L Gene

This gene is overexpressed in Heart - Left Ventricle (31.9) and Heart - Atrial Appendage (17.5).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for RD3L Gene

SOURCE GeneReport for Unigene cluster for RD3L Gene Hs.632325

genes like me logo Genes that share expressions with RD3L: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for RD3L Gene

Orthologs for RD3L Gene

This gene was present in the common ancestor of chordates.

Orthologs for RD3L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RD3L 35
  • 99.66 (n)
  • 99.49 (a)
cow
(Bos Taurus)
Mammalia RD3L 35
  • 84.85 (n)
  • 82.32 (a)
RD3L 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RD3L 35
  • 89.06 (n)
  • 86.87 (a)
RD3L 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia BC048943 35
  • 81.39 (n)
  • 75.63 (a)
BC048943 36
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RD3L 36
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RD3L 36
  • 79 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1305627 35
  • 81.27 (n)
  • 75.26 (a)
chicken
(Gallus gallus)
Aves LOC772190 35
  • 74.92 (n)
  • 74.75 (a)
RD3L 36
  • 75 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RD3L 36
  • 75 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rd3l 35
  • 69.08 (n)
  • 66.84 (a)
zebrafish
(Danio rerio)
Actinopterygii RD3L 36
  • 30 (a)
OneToOne
si:ch211-253p18.5 35
  • 49.47 (n)
  • 37.77 (a)
Species with no ortholog for RD3L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RD3L Gene

ENSEMBL:
Gene Tree for RD3L (if available)
TreeFam:
Gene Tree for RD3L (if available)

Paralogs for RD3L Gene

Paralogs for RD3L Gene

genes like me logo Genes that share paralogs with RD3L: view

Variants for RD3L Gene

Relevant External Links for RD3L Gene

HapMap Linkage Disequilibrium report
RD3L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RD3L Gene

Disorders for RD3L Gene

No disorders were found for RD3L Gene.

No data available for UniProtKB/Swiss-Prot for RD3L Gene

Publications for RD3L Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R. … Weissenbach J. (Nature 2003) 4

Products for RD3L Gene

Sources for RD3L Gene

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