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Aliases for RCSD1 Gene

Aliases for RCSD1 Gene

  • RCSD Domain Containing 1 2 3
  • CAPZIP 3 4 6
  • RCSD Domain-Containing Protein 1 3 4
  • Protein Kinase Substrate CapZIP 3 4
  • Protein Kinase Substrate MK2S4 3
  • CapZ-Interacting Protein 3
  • MK2S4 3

External Ids for RCSD1 Gene

Previous GeneCards Identifiers for RCSD1 Gene

  • GC01P164331
  • GC01P165865
  • GC01P138845

Summaries for RCSD1 Gene

GeneCards Summary for RCSD1 Gene

RCSD1 (RCSD Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include actin filament binding.

UniProtKB/Swiss-Prot for RCSD1 Gene

  • Stress-induced phosphorylation of CAPZIP may regulate the ability of F-actin-capping protein to remodel actin filament assembly.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RCSD1 Gene

Genomics for RCSD1 Gene

Regulatory Elements for RCSD1 Gene

Genomic Location for RCSD1 Gene

Start:
167,630,093 bp from pter
End:
167,708,692 bp from pter
Size:
78,600 bases
Orientation:
Plus strand

Genomic View for RCSD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RCSD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RCSD1 Gene

Proteins for RCSD1 Gene

  • Protein details for RCSD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6JBY9-CPZIP_HUMAN
    Recommended name:
    CapZ-interacting protein
    Protein Accession:
    Q6JBY9
    Secondary Accessions:
    • B1AK48
    • Q4G0E7
    • Q6IN93
    • Q8IZM2
    • Q96DX0
    • Q9NST4

    Protein attributes for RCSD1 Gene

    Size:
    416 amino acids
    Molecular mass:
    44504 Da
    Quaternary structure:
    • Interacts with CAPZA2 and CAPZB.
    SequenceCaution:
    • Sequence=CAB70910.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for RCSD1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RCSD1 Gene

Proteomics data for RCSD1 Gene at MOPED

Post-translational modifications for RCSD1 Gene

Other Protein References for RCSD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RCSD1 Gene

Domains for RCSD1 Gene

Protein Domains for RCSD1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RCSD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6JBY9

UniProtKB/Swiss-Prot:

CPZIP_HUMAN :
  • Q6JBY9
Domain:
  • Contains 1 RCSD domain.
genes like me logo Genes that share domains with RCSD1: view

No data available for Gene Families for RCSD1 Gene

Function for RCSD1 Gene

Molecular function for RCSD1 Gene

UniProtKB/Swiss-Prot Function: Stress-induced phosphorylation of CAPZIP may regulate the ability of F-actin-capping protein to remodel actin filament assembly.

Gene Ontology (GO) - Molecular Function for RCSD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0051015 actin filament binding IPI 15850461
genes like me logo Genes that share ontologies with RCSD1: view

Phenotypes for RCSD1 Gene

GenomeRNAi human phenotypes for RCSD1:
genes like me logo Genes that share phenotypes with RCSD1: view

Animal Model Products

CRISPR Products

miRNA for RCSD1 Gene

miRTarBase miRNAs that target RCSD1

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RCSD1 Gene

Localization for RCSD1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RCSD1 Gene COMPARTMENTS Subcellular localization image for RCSD1 gene
Compartment Confidence
cytoskeleton 3
nucleus 3
cytosol 2
chloroplast 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for RCSD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005884 actin filament IC 15850461
genes like me logo Genes that share ontologies with RCSD1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RCSD1 Gene

Pathways for RCSD1 Gene

SuperPathways for RCSD1 Gene

No Data Available

Interacting Proteins for RCSD1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000356828%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000356828 for RCSD1 Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for RCSD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003009 skeletal muscle contraction ISS --
GO:0071474 cellular hyperosmotic response IDA 15850461
genes like me logo Genes that share ontologies with RCSD1: view

No data available for Pathways by source for RCSD1 Gene

Transcripts for RCSD1 Gene

Unigene Clusters for RCSD1 Gene

RCSD domain containing 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RCSD1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RCSD1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8
SP1: -
SP2: - -
SP3:

Relevant External Links for RCSD1 Gene

GeneLoc Exon Structure for
RCSD1
ECgene alternative splicing isoforms for
RCSD1

Expression for RCSD1 Gene

mRNA expression in normal human tissues for RCSD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RCSD1 Gene

This gene is overexpressed in Whole Blood (9.6) and Spleen (4.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RCSD1 Gene

SOURCE GeneReport for Unigene cluster for RCSD1 Gene Hs.493867

mRNA Expression by UniProt/SwissProt for RCSD1 Gene

Q6JBY9-CPZIP_HUMAN
Tissue specificity: Highly expressed in skeletal muscle and more weakly in cardiac muscle. Also expressed in several lymphoid organs, including spleen, thymus, peripheral blood leukocytes, lymph node and bone marrow.
genes like me logo Genes that share expressions with RCSD1: view

In Situ Assay Products

Orthologs for RCSD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RCSD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RCSD1 35
  • 99.44 (n)
  • 99.28 (a)
RCSD1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RCSD1 35
  • 82.41 (n)
  • 78.63 (a)
RCSD1 36
  • 77 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RCSD1 35
  • 77.92 (n)
  • 72.03 (a)
RCSD1 36
  • 68 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rcsd1 35
  • 72.55 (n)
  • 65.44 (a)
Rcsd1 16
Rcsd1 36
  • 65 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RCSD1 36
  • 56 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RCSD1 36
  • 38 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rcsd1 35
  • 72.57 (n)
  • 64.29 (a)
chicken
(Gallus gallus)
Aves RCSD1 35
  • 59.66 (n)
  • 54.44 (a)
RCSD1 36
  • 48 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RCSD1 36
  • 53 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii dub 36
  • 38 (a)
OneToMany
RCSD1 (2 of 2) 36
  • 35 (a)
OneToMany
Species with no ortholog for RCSD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RCSD1 Gene

ENSEMBL:
Gene Tree for RCSD1 (if available)
TreeFam:
Gene Tree for RCSD1 (if available)

Paralogs for RCSD1 Gene

No data available for Paralogs for RCSD1 Gene

Variants for RCSD1 Gene

Sequence variations from dbSNP and Humsavar for RCSD1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs742469 -- 167,649,634(-) AGCCT(C/T)CTAAA intron-variant
rs742470 -- 167,648,979(+) CCCTC(A/C)GGGAG intron-variant
rs742471 -- 167,645,515(+) ATTTC(A/G)CAGAG intron-variant
rs742472 -- 167,645,508(+) CTGGG(A/G)AATTT intron-variant
rs761073 -- 167,651,237(-) GTGGC(A/G)Ttgtc intron-variant

Relevant External Links for RCSD1 Gene

HapMap Linkage Disequilibrium report
RCSD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RCSD1 Gene

Disorders for RCSD1 Gene

Relevant External Links for RCSD1

Genetic Association Database (GAD)
RCSD1
Human Genome Epidemiology (HuGE) Navigator
RCSD1
genes like me logo Genes that share disorders with RCSD1: view

No data available for UniProtKB/Swiss-Prot for RCSD1 Gene

Publications for RCSD1 Gene

  1. Pre-B-cell leukemia homeobox 1 (PBX1) shows functional and possible genetic association with bone mineral density variation. (PMID: 19064610) Cheung C.L. … Kung A.W. (Hum. Mol. Genet. 2009) 3 48
  2. Follow-up of a major linkage peak on chromosome 1 reveals suggestive QTLs associated with essential hypertension: GenNet study. (PMID: 19536175) Ehret G.B. … Chakravarti A. (Eur. J. Hum. Genet. 2009) 3 48
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  4. The phosphorylation of CapZ-interacting protein (CapZIP) by stress- activated protein kinases triggers its dissociation from CapZ. (PMID: 15850461) Eyers C.E. … Cohen P. (Biochem. J. 2005) 3 4
  5. A new partner gene fused to ABL1 in a t(1;9)(q24;q34)-associated B-cell acute lymphoblastic leukemia. (PMID: 17541395) De Braekeleer E. … De Braekeleer M. (Leukemia 2007) 3

Products for RCSD1 Gene

Sources for RCSD1 Gene

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