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Aliases for RCN3 Gene

Aliases for RCN3 Gene

  • Reticulocalbin 3, EF-Hand Calcium Binding Domain 2 3
  • EF-Hand Calcium-Binding Protein RLP49 3 4
  • Reticulocalbin-3 3
  • Reticulocabin 3
  • RLP49 3

External Ids for RCN3 Gene

Previous GeneCards Identifiers for RCN3 Gene

  • GC19P054706
  • GC19P054722
  • GC19P050030
  • GC19P046407

Summaries for RCN3 Gene

GeneCards Summary for RCN3 Gene

RCN3 (Reticulocalbin 3, EF-Hand Calcium Binding Domain) is a Protein Coding gene. Diseases associated with RCN3 include ollier disease. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is CALU.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RCN3 Gene

Genomics for RCN3 Gene

Regulatory Elements for RCN3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RCN3 Gene

49,527,618 bp from pter
49,546,962 bp from pter
19,345 bases
Plus strand

Genomic View for RCN3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RCN3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RCN3 Gene

Proteins for RCN3 Gene

  • Protein details for RCN3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein Accession:
    Secondary Accessions:
    • Q9HBZ8

    Protein attributes for RCN3 Gene

    328 amino acids
    Molecular mass:
    37493 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RCN3 Gene

Proteomics data for RCN3 Gene at MOPED

Post-translational modifications for RCN3 Gene

  • Glycosylation at Asn140
  • Modification sites at PhosphoSitePlus

Other Protein References for RCN3 Gene

Antibody Products

No data available for DME Specific Peptides for RCN3 Gene

Domains for RCN3 Gene

Gene Families for RCN3 Gene

Protein Domains for RCN3 Gene

Suggested Antigen Peptide Sequences for RCN3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 6 EF-hand domains.
  • Belongs to the CREC family.
  • Contains 6 EF-hand domains.
  • Belongs to the CREC family.
genes like me logo Genes that share domains with RCN3: view

Function for RCN3 Gene

Gene Ontology (GO) - Molecular Function for RCN3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with RCN3: view

Phenotypes for RCN3 Gene

GenomeRNAi human phenotypes for RCN3:
genes like me logo Genes that share phenotypes with RCN3: view

miRNA for RCN3 Gene

miRTarBase miRNAs that target RCN3

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RCN3

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for RCN3 Gene

Localization for RCN3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RCN3 Gene

Endoplasmic reticulum lumen.

Subcellular locations from

Jensen Localization Image for RCN3 Gene COMPARTMENTS Subcellular localization image for RCN3 gene
Compartment Confidence
endoplasmic reticulum 3
extracellular 2
cytosol 1
lysosome 1
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for RCN3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum --
GO:0005788 endoplasmic reticulum lumen IEA --
genes like me logo Genes that share ontologies with RCN3: view

Pathways for RCN3 Gene

SuperPathways for RCN3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RCN3 Gene


No data available for Pathways by source for RCN3 Gene

Transcripts for RCN3 Gene

mRNA/cDNA for RCN3 Gene

(9) Selected AceView cDNA sequences:
(4) Additional mRNA sequences :
(3) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RCN3 Gene

Reticulocalbin 3, EF-hand calcium binding domain:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RCN3

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RCN3 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7
SP2: -
SP3: -

Relevant External Links for RCN3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RCN3 Gene

mRNA expression in normal human tissues for RCN3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for RCN3 Gene

This gene is overexpressed in Bone marrow stromal cell (56.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RCN3 Gene

SOURCE GeneReport for Unigene cluster for RCN3 Gene Hs.567550

genes like me logo Genes that share expressions with RCN3: view

Expression partners for RCN3 Gene

* - Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RCN3 Gene

Orthologs for RCN3 Gene

This gene was present in the common ancestor of animals.

Orthologs for RCN3 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia RCN3 35
  • 90.65 (n)
  • 96.34 (a)
RCN3 36
  • 96 (a)
(Canis familiaris)
Mammalia RCN3 35
  • 90.45 (n)
  • 95.73 (a)
RCN3 36
  • 95 (a)
(Mus musculus)
Mammalia Rcn3 35
  • 87.2 (n)
  • 92.68 (a)
Rcn3 16
Rcn3 36
  • 93 (a)
(Pan troglodytes)
Mammalia RCN3 35
  • 98.88 (n)
  • 99.39 (a)
RCN3 36
  • 99 (a)
(Rattus norvegicus)
Mammalia Rcn3 35
  • 86.69 (n)
  • 93.29 (a)
(Monodelphis domestica)
Mammalia RCN3 36
  • 87 (a)
(Ornithorhynchus anatinus)
Mammalia RCN3 36
  • 66 (a)
(Anolis carolinensis)
Reptilia RCN3 36
  • 61 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia rcn3 35
  • 63.05 (n)
  • 60.34 (a)
(Danio rerio)
Actinopterygii rcn3 35
  • 60.54 (n)
  • 61.2 (a)
rcn3 36
  • 58 (a)
fruit fly
(Drosophila melanogaster)
Insecta scf 36
  • 44 (a)
(Caenorhabditis elegans)
Secernentea calu-1 36
  • 40 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 41 (a)
-- 36
  • 45 (a)
CSA.6945 36
  • 40 (a)
Species with no ortholog for RCN3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RCN3 Gene

Gene Tree for RCN3 (if available)
Gene Tree for RCN3 (if available)

Paralogs for RCN3 Gene

Paralogs for RCN3 Gene

(3) SIMAP similar genes for RCN3 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with RCN3: view

Variants for RCN3 Gene

Sequence variations from dbSNP and Humsavar for RCN3 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1129459 -- 49,543,180(+) TATGG(C/T)GAGGA reference, synonymous-codon
rs1129460 -- 49,543,216(+) TGAGC(A/C)CCGCG utr-variant-3-prime
rs1129476 -- 49,543,491(+) CAGCT(C/T)TAAGA utr-variant-3-prime
rs1129479 -- 49,543,524(+) CAAAT(C/T)TGAGC utr-variant-3-prime
rs10417248 -- 49,538,496(+) gtgta(A/G)agaca intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RCN3 Gene

Variant ID Type Subtype PubMed ID
nsv9739 CNV Gain+Loss 18304495
nsv912261 CNV Loss 21882294
nsv912262 CNV Loss 21882294
nsv833862 CNV Loss 17160897
nsv912265 CNV Loss 21882294
nsv833863 CNV Loss 17160897

Relevant External Links for RCN3 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RCN3 Gene

Disorders for RCN3 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for RCN3 Gene in MalaCards »

(1) Disease for RCN3 Gene

(1) University of Copenhagen DISEASES for RCN3 Gene

genes like me logo Genes that share disorders with RCN3: view

No data available for OMIM , UniProtKB/Swiss-Prot , Novoseek inferred disease relationships , Genatlas and External Links for RCN3 Gene

Publications for RCN3 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu R.-M. … Chen J.-L. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 4
  4. A proteomic approach reveals transient association of reticulocalbin-3, a novel member of the CREC family, with the precursor of subtilisin-like proprotein convertase, PACE4. (PMID: 16433634) Tsuji A. … Matsuda Y. (Biochem. J. 2006) 3 23
  5. Proteomic characterization of the human cortical neuronal cell line HCN-2. (PMID: 14615026) Peyrl A. … Lubec G. (J. Chem. Neuroanat. 2003) 23

Products for RCN3 Gene

Sources for RCN3 Gene

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