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Aliases for RCN3 Gene

Aliases for RCN3 Gene

  • Reticulocalbin 3, EF-Hand Calcium Binding Domain 2 3
  • EF-Hand Calcium-Binding Protein RLP49 3 4
  • Reticulocabin 3
  • RLP49 3

External Ids for RCN3 Gene

Previous GeneCards Identifiers for RCN3 Gene

  • GC19P054706
  • GC19P054722
  • GC19P050030
  • GC19P046407

Summaries for RCN3 Gene

GeneCards Summary for RCN3 Gene

RCN3 (Reticulocalbin 3, EF-Hand Calcium Binding Domain) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is CALU.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RCN3 Gene

Genomics for RCN3 Gene

Regulatory Elements for RCN3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RCN3 Gene

Chromosome:
19
Start:
49,527,579 bp from pter
End:
49,546,962 bp from pter
Size:
19,384 bases
Orientation:
Plus strand

Genomic View for RCN3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RCN3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RCN3 Gene

Proteins for RCN3 Gene

  • Protein details for RCN3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96D15-RCN3_HUMAN
    Recommended name:
    Reticulocalbin-3
    Protein Accession:
    Q96D15
    Secondary Accessions:
    • Q9HBZ8

    Protein attributes for RCN3 Gene

    Size:
    328 amino acids
    Molecular mass:
    37493 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RCN3 Gene

Proteomics data for RCN3 Gene at MOPED

Post-translational modifications for RCN3 Gene

  • Glycosylation at Asn 140
  • Modification sites at PhosphoSitePlus

Other Protein References for RCN3 Gene

No data available for DME Specific Peptides for RCN3 Gene

Domains & Families for RCN3 Gene

Gene Families for RCN3 Gene

Protein Domains for RCN3 Gene

Suggested Antigen Peptide Sequences for RCN3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96D15

UniProtKB/Swiss-Prot:

RCN3_HUMAN :
  • Contains 6 EF-hand domains.
  • Belongs to the CREC family.
Domain:
  • Contains 6 EF-hand domains.
Family:
  • Belongs to the CREC family.
genes like me logo Genes that share domains with RCN3: view

Function for RCN3 Gene

Gene Ontology (GO) - Molecular Function for RCN3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with RCN3: view
genes like me logo Genes that share phenotypes with RCN3: view

miRNA for RCN3 Gene

miRTarBase miRNAs that target RCN3

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RCN3

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for RCN3 Gene

Localization for RCN3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RCN3 Gene

Endoplasmic reticulum lumen.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RCN3 Gene COMPARTMENTS Subcellular localization image for RCN3 gene
Compartment Confidence
endoplasmic reticulum 3

Gene Ontology (GO) - Cellular Components for RCN3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005788 endoplasmic reticulum lumen IEA --
genes like me logo Genes that share ontologies with RCN3: view

Pathways & Interactions for RCN3 Gene

SuperPathways for RCN3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RCN3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RCN3 Gene

Drugs & Compounds for RCN3 Gene

No Compound Related Data Available

Transcripts for RCN3 Gene

mRNA/cDNA for RCN3 Gene

(3) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RCN3 Gene

Reticulocalbin 3, EF-hand calcium binding domain:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RCN3

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RCN3 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7
SP1:
SP2: -
SP3: -

Relevant External Links for RCN3 Gene

GeneLoc Exon Structure for
RCN3
ECgene alternative splicing isoforms for
RCN3

Expression for RCN3 Gene

mRNA expression in normal human tissues for RCN3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for RCN3 Gene

This gene is overexpressed in Bone marrow stromal cell (56.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for RCN3 Gene



SOURCE GeneReport for Unigene cluster for RCN3 Gene Hs.567550

genes like me logo Genes that share expression patterns with RCN3: view

Protein tissue co-expression partners for RCN3 Gene

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RCN3 Gene

Orthologs for RCN3 Gene

This gene was present in the common ancestor of animals.

Orthologs for RCN3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RCN3 35
  • 90.65 (n)
  • 96.34 (a)
RCN3 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RCN3 35
  • 90.45 (n)
  • 95.73 (a)
RCN3 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rcn3 35
  • 87.2 (n)
  • 92.68 (a)
Rcn3 16
Rcn3 36
  • 93 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RCN3 35
  • 98.88 (n)
  • 99.39 (a)
RCN3 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rcn3 35
  • 86.69 (n)
  • 93.29 (a)
oppossum
(Monodelphis domestica)
Mammalia RCN3 36
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RCN3 36
  • 66 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RCN3 36
  • 61 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rcn3 35
  • 63.05 (n)
  • 60.34 (a)
zebrafish
(Danio rerio)
Actinopterygii rcn3 35
  • 60.54 (n)
  • 61.2 (a)
rcn3 36
  • 58 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta scf 36
  • 44 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea calu-1 36
  • 40 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 41 (a)
ManyToMany
-- 36
  • 45 (a)
ManyToMany
CSA.6945 36
  • 40 (a)
ManyToMany
Species with no ortholog for RCN3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RCN3 Gene

ENSEMBL:
Gene Tree for RCN3 (if available)
TreeFam:
Gene Tree for RCN3 (if available)

Paralogs for RCN3 Gene

Paralogs for RCN3 Gene

(3) SIMAP similar genes for RCN3 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with RCN3: view

Variants for RCN3 Gene

Sequence variations from dbSNP and Humsavar for RCN3 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1129459 -- 49,543,180(+) TATGG(A/C/T)GAGGA synonymous-codon, reference
rs1129460 -- 49,543,216(+) TGAGC(A/C)CCGCG utr-variant-3-prime
rs1129476 -- 49,543,491(+) CAGCT(C/T)TAAGA utr-variant-3-prime
rs1129479 -- 49,543,524(+) CAAAT(C/T)TGAGC utr-variant-3-prime
rs3187346 -- 49,543,108(+) CAGGA(C/T)GGGCG synonymous-codon, reference

Structural Variations from Database of Genomic Variants (DGV) for RCN3 Gene

Variant ID Type Subtype PubMed ID
nsv9739 CNV Gain+Loss 18304495
nsv912261 CNV Loss 21882294
nsv912262 CNV Loss 21882294
nsv833862 CNV Loss 17160897
nsv912265 CNV Loss 21882294
nsv833863 CNV Loss 17160897

Variation tolerance for RCN3 Gene

Residual Variation Intolerance Score: 85.24% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.71; 78.66% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RCN3 Gene

HapMap Linkage Disequilibrium report
RCN3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RCN3 Gene

Disorders for RCN3 Gene

Relevant External Links for RCN3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RCN3
genes like me logo Genes that share disorders with RCN3: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RCN3 Gene

Publications for RCN3 Gene

  1. The rapidly expanding CREC protein family: members, localization, function, and role in disease. (PMID: 19260022) HonorAc B. (Bioessays 2009) 23 67
  2. A proteomic approach reveals transient association of reticulocalbin-3, a novel member of the CREC family, with the precursor of subtilisin-like proprotein convertase, PACE4. (PMID: 16433634) Tsuji A. … Matsuda Y. (Biochem. J. 2006) 23 67
  3. Proteomic characterization of the human cortical neuronal cell line HCN-2. (PMID: 14615026) Peyrl A. … Lubec G. (J. Chem. Neuroanat. 2003) 23 67
  4. Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) (Nature 2014) 67
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 67

Products for RCN3 Gene

Sources for RCN3 Gene

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