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Aliases for RCN1 Gene

Aliases for RCN1 Gene

  • Reticulocalbin 1, EF-Hand Calcium Binding Domain 2 3
  • Proliferation-Inducing Gene 20 2 3
  • RCN 3 4
  • Epididymis Secretory Protein Li 84 3
  • Reticulocalbin-1 3
  • HEL-S-84 3
  • PIG20 3
  • RCAL 3

External Ids for RCN1 Gene

Previous Symbols for RCN1 Gene

  • RCN

Summaries for RCN1 Gene

Entrez Gene Summary for RCN1 Gene

  • Reticulocalbin 1 is a calcium-binding protein located in the lumen of the ER. The protein contains six conserved regions with similarity to a high affinity Ca(+2)-binding motif, the EF-hand. High conservation of amino acid residues outside of these motifs, in comparison to mouse reticulocalbin, is consistent with a possible biochemical function besides that of calcium binding. In human endothelial and prostate cancer cell lines this protein localizes to the plasma membrane.[provided by RefSeq, Jan 2009]

GeneCards Summary for RCN1 Gene

RCN1 (Reticulocalbin 1, EF-Hand Calcium Binding Domain) is a Protein Coding gene. Diseases associated with RCN1 include prostate cancer and wagr syndrome. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is CALU.

UniProtKB/Swiss-Prot for RCN1 Gene

  • May regulate calcium-dependent activities in the endoplasmic reticulum lumen or post-ER compartment

Gene Wiki entry for RCN1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RCN1 Gene

Genomics for RCN1 Gene

Genomic Location for RCN1 Gene

Start:
31,812,391 bp from pter
End:
32,105,755 bp from pter
Size:
293,365 bases
Orientation:
Plus strand

Genomic View for RCN1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RCN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RCN1 Gene

Regulatory Elements for RCN1 Gene

Proteins for RCN1 Gene

  • Protein details for RCN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15293-RCN1_HUMAN
    Recommended name:
    Reticulocalbin-1
    Protein Accession:
    Q15293
    Secondary Accessions:
    • B7Z1M1
    • D3DR00

    Protein attributes for RCN1 Gene

    Size:
    331 amino acids
    Molecular mass:
    38890 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • This protein has four functional calcium-binding sites; potential sites II and VI have lost affinity for calcium.

    Alternative splice isoforms for RCN1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RCN1 Gene

Proteomics data for RCN1 Gene at MOPED

Post-translational modifications for RCN1 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys70, Lys105, Lys122, Lys141, and Lys176
  • Glycosylation at Asn53

Other Protein References for RCN1 Gene

No data available for DME Specific Peptides for RCN1 Gene

Domains for RCN1 Gene

Gene Families for RCN1 Gene

HGNC:
  • EFHAND :EF-hand domain containing

Protein Domains for RCN1 Gene

UniProtKB/Swiss-Prot:

RCN1_HUMAN
Domain:
  • Contains 6 EF-hand domains.:
    • Q15293
Family:
  • Belongs to the CREC family.:
    • Q15293
genes like me logo Genes that share domains with RCN1: view

Function for RCN1 Gene

Molecular function for RCN1 Gene

GENATLAS Biochemistry: reticulocalbin,Ca++ binding protein of the endoplasmic reticulum,involved in protein processing,deleted in WAGR syndrome
UniProtKB/Swiss-Prot Function: May regulate calcium-dependent activities in the endoplasmic reticulum lumen or post-ER compartment

Gene Ontology (GO) - Molecular Function for RCN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
GO:0005515 protein binding IPI 16713569
genes like me logo Genes that share ontologies with RCN1: view

miRNA for RCN1 Gene

miRTarBase miRNAs that target RCN1

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RCN1 Gene

Localization for RCN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RCN1 Gene

Endoplasmic reticulum lumen.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RCN1 Gene COMPARTMENTS Subcellular localization image for RCN1 gene
Compartment Confidence
endoplasmic reticulum 5

Gene Ontology (GO) - Cellular Components for RCN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IDA --
GO:0005788 endoplasmic reticulum lumen IEA --
genes like me logo Genes that share ontologies with RCN1: view

Pathways for RCN1 Gene

SuperPathways for RCN1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RCN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001701 in utero embryonic development IEA --
GO:0043010 camera-type eye development IEA --
genes like me logo Genes that share ontologies with RCN1: view

No data available for Pathways by source for RCN1 Gene

Compounds for RCN1 Gene

(1) HMDB Compounds for RCN1 Gene

Compound Synonyms Cas Number PubMed IDs
Calcium
  • Ca
7440-70-2
genes like me logo Genes that share compounds with RCN1: view

Transcripts for RCN1 Gene

Unigene Clusters for RCN1 Gene

Reticulocalbin 1, EF-hand calcium binding domain:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RCN1 Gene

No ASD Table

Relevant External Links for RCN1 Gene

GeneLoc Exon Structure for
RCN1
ECgene alternative splicing isoforms for
RCN1

Expression for RCN1 Gene

mRNA expression in normal human tissues for RCN1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RCN1 Gene

SOURCE GeneReport for Unigene cluster for RCN1 Gene Hs.97887

genes like me logo Genes that share expressions with RCN1: view

Orthologs for RCN1 Gene

This gene was present in the common ancestor of animals.

Orthologs for RCN1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RCN1 36
  • 97.65 (n)
  • 97.25 (a)
RCN1 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RCN1 36
  • 90.94 (n)
  • 93.96 (a)
RCN1 37
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RCN1 36
  • 91.46 (n)
  • 97.15 (a)
RCN1 37
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rcn1 36
  • 89 (n)
  • 95.75 (a)
Rcn1 16
Rcn1 37
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RCN1 37
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RCN1 37
  • 89 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rcn1 36
  • 89.11 (n)
  • 95.42 (a)
chicken
(Gallus gallus)
Aves RCN1 36
  • 77.26 (n)
  • 79.26 (a)
RCN1 37
  • 53 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RCN1 37
  • 78 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia MGC76276 36
rcn1 36
  • 74.28 (n)
  • 79.14 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10291 36
zebrafish
(Danio rerio)
Actinopterygii rcn1 36
  • 73.88 (n)
  • 77.05 (a)
rcn1 37
  • 73 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta scf 37
  • 44 (a)
OneToMany
scf 38
  • 46 (a)
CG9112 38
  • 36 (a)
worm
(Caenorhabditis elegans)
Secernentea calu-1 37
  • 46 (a)
OneToMany
M03F4.7 38
  • 47 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 46 (a)
ManyToMany
-- 37
  • 55 (a)
ManyToMany
CSA.6945 37
  • 42 (a)
ManyToMany
Species with no ortholog for RCN1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RCN1 Gene

ENSEMBL:
Gene Tree for RCN1 (if available)
TreeFam:
Gene Tree for RCN1 (if available)

Paralogs for RCN1 Gene

Paralogs for RCN1 Gene

Selected SIMAP similar genes for RCN1 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for RCN1 Gene

genes like me logo Genes that share paralogs with RCN1: view

Variants for RCN1 Gene

Sequence variations from dbSNP and Humsavar for RCN1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs4876 -- 32,103,432(+) GATCA(C/T)GCACA synonymous-codon, reference
rs6711 -- 32,105,392(-) GGGGG(A/G)CAGGT utr-variant-3-prime
rs8219 -- 32,091,188(+) CTCTC(C/T)TCGGG utr-variant-5-prime
rs170327 -- 32,089,919(-) tttgg(A/G)aggcg upstream-variant-2KB
rs190104 -- 32,090,986(-) CCGCT(C/T)GCGCG utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for RCN1 Gene

Variant ID Type Subtype PubMed ID
nsv832107 CNV Gain 17160897
nsv39810 CNV Loss 16902084

Relevant External Links for RCN1 Gene

HapMap Linkage Disequilibrium report
RCN1

Disorders for RCN1 Gene

(1) Novoseek inferred disease relationships for RCN1 Gene

Disease -log(P) Hits PubMed IDs
tumors 0 2

Relevant External Links for RCN1

Genetic Association Database (GAD)
RCN1
genes like me logo Genes that share disorders with RCN1: view

No data available for UniProtKB/Swiss-Prot for RCN1 Gene

Publications for RCN1 Gene

  1. Cloning of a human homologue of mouse reticulocalbin reveals conservation of structural domains in the novel endoplasmic reticulum resident Ca(2+)-binding protein with multiple EF-hand motifs. (PMID: 8586628) Ozawa M. (J. Biochem. 1995) 2 3 4
  2. The reticulocalbin gene maps to the WAGR region in human and to the Small eye Harwell deletion in mouse. (PMID: 9192846) Kent J. … Bickmore W.A. (Genomics 1997) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. Novel surface expression of reticulocalbin 1 on bone endothelial cells and human prostate cancer cells is regulated by TNF-alpha. (PMID: 18561328) Cooper C.R. … Pienta K.J. (J. Cell. Biochem. 2008) 3 23
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for RCN1 Gene

Sources for RCN1 Gene

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