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Aliases for RCCD1 Gene

Aliases for RCCD1 Gene

  • RCC1 Domain Containing 1 2 3

External Ids for RCCD1 Gene

Previous GeneCards Identifiers for RCCD1 Gene

  • GC15P089301
  • GC15P091498
  • GC15P067609

Summaries for RCCD1 Gene

GeneCards Summary for RCCD1 Gene

RCCD1 (RCC1 Domain Containing 1) is a Protein Coding gene. An important paralog of this gene is HERC5.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RCCD1 Gene

Genomics for RCCD1 Gene

Regulatory Elements for RCCD1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RCCD1 Gene

90,954,870 bp from pter
90,973,158 bp from pter
18,289 bases
Plus strand

Genomic View for RCCD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RCCD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RCCD1 Gene

Proteins for RCCD1 Gene

  • Protein details for RCCD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    RCC1 domain-containing protein 1
    Protein Accession:
    Secondary Accessions:
    • B2RTP9
    • Q29RX6

    Protein attributes for RCCD1 Gene

    376 amino acids
    Molecular mass:
    40079 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RCCD1 Gene

Proteomics data for RCCD1 Gene at MOPED

Post-translational modifications for RCCD1 Gene

  • Ubiquitination at Lys271, Lys352, Lys373, and Lys375
  • Modification sites at PhosphoSitePlus

Other Protein References for RCCD1 Gene

No data available for DME Specific Peptides for RCCD1 Gene

Domains for RCCD1 Gene

Protein Domains for RCCD1 Gene


Suggested Antigen Peptide Sequences for RCCD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • A6NED2
  • Contains 4 RCC1 repeats.
genes like me logo Genes that share domains with RCCD1: view

No data available for Gene Families for RCCD1 Gene

Function for RCCD1 Gene

Animal Model Products

miRNA for RCCD1 Gene

miRTarBase miRNAs that target RCCD1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RCCD1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RCCD1 Gene

Localization for RCCD1 Gene

Subcellular locations from

Jensen Localization Image for RCCD1 Gene COMPARTMENTS Subcellular localization image for RCCD1 gene
Compartment Confidence
cytosol 4
plasma membrane 4
nucleus 3

Gene Ontology (GO) - Cellular Components for RCCD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA --
GO:0005886 plasma membrane IDA --
genes like me logo Genes that share ontologies with RCCD1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RCCD1 Gene

Pathways for RCCD1 Gene

SuperPathways for RCCD1 Gene

No Data Available

Interacting Proteins for RCCD1 Gene

Gene Ontology (GO) - Biological Process for RCCD1 Gene


No data available for Pathways by source for RCCD1 Gene

Transcripts for RCCD1 Gene

Unigene Clusters for RCCD1 Gene

RCC1 domain containing 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RCCD1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RCCD1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9a · 9b · 9c
SP1: -
SP2: -
SP4: - -
SP5: -

Relevant External Links for RCCD1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RCCD1 Gene

mRNA expression in normal human tissues for RCCD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for RCCD1 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (20.3), Gallbladder (9.8), Pancreas (8.3), and Prostate (6.8).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RCCD1 Gene

SOURCE GeneReport for Unigene cluster for RCCD1 Gene Hs.655895

genes like me logo Genes that share expressions with RCCD1: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Expression partners for RCCD1 Gene

Orthologs for RCCD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for RCCD1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia RCCD1 35
  • 84.45 (n)
  • 80.43 (a)
RCCD1 36
  • 80 (a)
(Canis familiaris)
Mammalia RCCD1 35
  • 85.65 (n)
  • 82.19 (a)
RCCD1 36
  • 80 (a)
(Mus musculus)
Mammalia Rccd1 35
  • 77.27 (n)
  • 74.87 (a)
Rccd1 16
Rccd1 36
  • 74 (a)
(Pan troglodytes)
Mammalia RCCD1 35
  • 99.73 (n)
  • 100 (a)
RCCD1 36
  • 99 (a)
(Rattus norvegicus)
Mammalia Rccd1 35
  • 79.3 (n)
  • 75.81 (a)
(Ornithorhynchus anatinus)
Mammalia RCCD1 36
  • 45 (a)
(Gallus gallus)
Aves RCCD1 35
  • 65.57 (n)
  • 61.84 (a)
RCCD1 36
  • 41 (a)
(Anolis carolinensis)
Reptilia RCCD1 36
  • 51 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia rccd1 35
  • 60.17 (n)
  • 55.08 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.17685 35
(Danio rerio)
Actinopterygii rccd1 35
  • 56.75 (n)
  • 51.72 (a)
rccd1 36
  • 39 (a)
rccd1 36
  • 39 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG6678 36
  • 31 (a)
(Caenorhabditis elegans)
Secernentea K11D2.1 36
  • 22 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 38 (a)
Species with no ortholog for RCCD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RCCD1 Gene

Gene Tree for RCCD1 (if available)
Gene Tree for RCCD1 (if available)

Paralogs for RCCD1 Gene

Paralogs for RCCD1 Gene

Selected SIMAP similar genes for RCCD1 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with RCCD1: view

Variants for RCCD1 Gene

Sequence variations from dbSNP and Humsavar for RCCD1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs13630 -- 90,961,979(-) TTCAT(G/T)GTTTT utr-variant-3-prime, intron-variant
rs14484 -- 90,962,217(+) GGAAT(C/G)CTGTG utr-variant-3-prime, intron-variant
rs867468 -- 90,954,897(+) TTGGG(A/G)CATGA utr-variant-5-prime
rs868547 -- 90,955,530(-) AGATC(C/T)TGGGT intron-variant
rs869523 -- 90,958,860(-) actca(C/T)gcgtg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RCCD1 Gene

Variant ID Type Subtype PubMed ID
nsv833089 CNV Loss 17160897
nsv515661 CNV Loss 19592680
nsv833090 CNV Loss 17160897

Relevant External Links for RCCD1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RCCD1 Gene

Disorders for RCCD1 Gene

(1) University of Copenhagen DISEASES for RCCD1 Gene

genes like me logo Genes that share disorders with RCCD1: view

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , Novoseek inferred disease relationships , Genatlas and External Links for RCCD1 Gene

Publications for RCCD1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody M.C. … Nusbaum C. (Nature 2006) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3

Products for RCCD1 Gene

Sources for RCCD1 Gene

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