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Aliases for RCAN3AS Gene

Subcategory (RNA class) for RCAN3AS Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for RCAN3AS Gene

  • RCAN3 Antisense 2 3

External Ids for RCAN3AS Gene

Previous GeneCards Identifiers for RCAN3AS Gene

  • GC01U903302

Summaries for RCAN3AS Gene

GeneCards Summary for RCAN3AS Gene

RCAN3AS (RCAN3 Antisense) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RCAN3AS Gene

Genomics for RCAN3AS Gene

Regulatory Elements for RCAN3AS Gene

Enhancers for RCAN3AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G024501 1.3 ENCODE dbSUPER 0.7 -0.7 -684 3.8 HDGF PKNOX1 FOXA2 SIN3A ARID4B DMAP1 FEZF1 ZNF143 ZNF207 ZNF263 NCMAP SYF2 NIPAL3 RCAN3 STPG1 GRHL3 RCAN3AS GC01M024529
GH01G024506 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.5 -5465 2.4 HDAC1 HDGF CTCF USF1 PKNOX1 ESRRA FOXA2 ETV1 RAD21 ZNF121 RCAN3 NCMAP NIPAL3 RUNX3 SRRM1 RCAN3AS GC01M024529
GH01G024521 1.1 dbSUPER 0.3 -20.1 -20122 1.2 HDGF CREB3L1 AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF766 ZNF207 ELOA RCAN3 NCMAP ENSG00000261349 LOC100506985 GC01M024529 RCAN3AS
GH01G024513 0.8 dbSUPER 0.4 -12.0 -12032 2.5 SIN3A CEBPG FOSL1 CTBP1 ZNF766 GATA3 ADNP FOSL2 FOS ZBTB20 NCMAP NIPAL3 RCAN3AS GC01M024529
GH01G024515 0.8 ENCODE 0.4 -13.4 -13406 0.2 TBP SIN3A ZEB1 FOSL1 CTBP1 ZNF766 GATA3 POLR3A ADNP FOSL2 NCMAP RCAN3AS GC01M024529
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RCAN3AS on UCSC Golden Path with GeneCards custom track

Promoters for RCAN3AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000003207 -740 2201 HDGF PKNOX1 FOXA2 SIN3A ARID4B DMAP1 FEZF1 ZNF143 ZNF207 ZNF263

Genomic Location for RCAN3AS Gene

Chromosome:
1
Start:
24,496,333 bp from pter
End:
24,502,360 bp from pter
Size:
6,028 bases
Orientation:
Minus strand

Genomic View for RCAN3AS Gene

Genes around RCAN3AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RCAN3AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RCAN3AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RCAN3AS Gene

Proteins for RCAN3AS Gene

  • Protein details for RCAN3AS Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    E3W6F2
    Recommended name:
    HCG1812040
    Protein Accession:
    E3W6F2

    Protein attributes for RCAN3AS Gene

    Size:
    56 amino acids
    Molecular mass:
    6356 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RCAN3AS Gene

Post-translational modifications for RCAN3AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for RCAN3AS Gene

Domains & Families for RCAN3AS Gene

Protein Domains for RCAN3AS Gene

ProtoNet:

Suggested Antigen Peptide Sequences for RCAN3AS Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RCAN3AS: view

No data available for Gene Families and UniProtKB/Swiss-Prot for RCAN3AS Gene

Function for RCAN3AS Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RCAN3AS Gene

Localization for RCAN3AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RCAN3AS Gene

Pathways & Interactions for RCAN3AS Gene

SuperPathways for RCAN3AS Gene

No Data Available

Interacting Proteins for RCAN3AS Gene

Gene Ontology (GO) - Biological Process for RCAN3AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RCAN3AS Gene

Drugs & Compounds for RCAN3AS Gene

No Compound Related Data Available

Transcripts for RCAN3AS Gene

mRNA/cDNA for RCAN3AS Gene

(5) Additional mRNA sequences :

Unigene Clusters for RCAN3AS Gene

RCAN3 antisense:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RCAN3AS Gene

No ASD Table

Relevant External Links for RCAN3AS Gene

GeneLoc Exon Structure for
RCAN3AS
ECgene alternative splicing isoforms for
RCAN3AS

Expression for RCAN3AS Gene

NURSA nuclear receptor signaling pathways regulating expression of RCAN3AS Gene:

RCAN3AS

SOURCE GeneReport for Unigene cluster for RCAN3AS Gene:

Hs.399958
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RCAN3AS Gene

Orthologs for RCAN3AS Gene

No data available for Orthologs and Evolution for RCAN3AS Gene

Paralogs for RCAN3AS Gene

No data available for Paralogs for RCAN3AS Gene

Variants for RCAN3AS Gene

Sequence variations from dbSNP and Humsavar for RCAN3AS Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000601409 -- 24,499,206(+) ATCAC(G/T)ACCCT intron-variant
rs1000655164 -- 24,499,480(+) GAGGG(C/G)AGCCA intron-variant
rs1001103325 -- 24,503,006(+) CACCA(C/G)GCTCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001266761 -- 24,496,309(+) ATAGA(C/T)GCTTT nc-transcript-variant
rs1001492203 -- 24,501,455(+) GGGGC(C/G)ATCTG intron-variant, upstream-variant-2KB

Relevant External Links for RCAN3AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RCAN3AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RCAN3AS Gene

Disorders for RCAN3AS Gene

Relevant External Links for RCAN3AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RCAN3AS

No disorders were found for RCAN3AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RCAN3AS Gene

Publications for RCAN3AS Gene

  1. Complexity of Bidirectional Transcription and Alternative Splicing at Human RCAN3 Locus. (PMID: 21961037) Facchin F. … Canaider S. (PLoS ONE 2011) 2 3 64
  2. Human RCAN3 gene expression and cell growth in endothelial cells. (PMID: 21042787) Canaider S. … Perretti M. (Int. J. Mol. Med. 2010) 2 64

Products for RCAN3AS Gene

Sources for RCAN3AS Gene

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