Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RC3H1-IT1 Gene

Subcategory (RNA class) for RC3H1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RC3H1-IT1 Gene

  • RC3H1 Intronic Transcript 1 2 3 5
  • RC3H1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for RC3H1-IT1 Gene

Previous GeneCards Identifiers for RC3H1-IT1 Gene

  • GC00U933582
  • GC01M173979

Summaries for RC3H1-IT1 Gene

GeneCards Summary for RC3H1-IT1 Gene

RC3H1-IT1 (RC3H1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RC3H1-IT1 Gene

Genomics for RC3H1-IT1 Gene

Regulatory Elements for RC3H1-IT1 Gene

Enhancers for RC3H1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F174014 1.1 FANTOM5 Ensembl 0.8 +0.7 706 1.4 RABGAP1L ZBTB37 SERPINC1 GAS5 SNORD81 RC3H1 GPR52 RC3H1-IT1 GC01M173998 RNA5SP68
GH01F174012 0.4 Ensembl 0.8 +4.1 4106 0.2 SERPINC1 GAS5 ZBTB37 SNORD81 RC3H1-IT1 RNA5SP68 GC01M173998
GH01F174010 0.9 Ensembl 0.4 +5.7 5706 0.2 ZNF664 GAS5 RC3H1-IT1 RNA5SP68 GC01M173998
GH01F174020 0.2 ENCODE 0.4 -6.1 -6060 3.9 HDGF ARNT MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 FOS ANKRD45 KLHL20 GAS5 GAS5-AS1 RC3H1 RC3H1-IT1
GH01F174008 0.6 Ensembl 0.4 +7.2 7206 2.0 SMARCE1 ETV1 CEBPB IRF9 ARID1B HMBOX1 ETV6 TRIM24 ANKRD45 SERPINC1 RC3H1-IT1 RNA5SP68 GC01M173998
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RC3H1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RC3H1-IT1 Gene

Chromosome:
1
Start:
174,009,267 bp from pter
End:
174,016,206 bp from pter
Size:
6,940 bases
Orientation:
Minus strand

Genomic View for RC3H1-IT1 Gene

Genes around RC3H1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RC3H1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RC3H1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for RC3H1-IT1 Gene

Proteins for RC3H1-IT1 Gene

Post-translational modifications for RC3H1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RC3H1-IT1 Gene

Domains & Families for RC3H1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RC3H1-IT1 Gene

Function for RC3H1-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RC3H1-IT1 Gene

Localization for RC3H1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RC3H1-IT1 Gene

Pathways & Interactions for RC3H1-IT1 Gene

SuperPathways for RC3H1-IT1 Gene

No Data Available

Interacting Proteins for RC3H1-IT1 Gene

Gene Ontology (GO) - Biological Process for RC3H1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RC3H1-IT1 Gene

Transcripts for RC3H1-IT1 Gene

mRNA/cDNA for RC3H1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RC3H1-IT1 Gene

No ASD Table

Relevant External Links for RC3H1-IT1 Gene

GeneLoc Exon Structure for
RC3H1-IT1
ECgene alternative splicing isoforms for
RC3H1-IT1

Expression for RC3H1-IT1 Gene

mRNA expression in normal human tissues for RC3H1-IT1 Gene

genes like me logo Genes that share expression patterns with RC3H1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RC3H1-IT1 Gene

Orthologs for RC3H1-IT1 Gene

Evolution for RC3H1-IT1 Gene

ENSEMBL:
Gene Tree for RC3H1-IT1 (if available)
TreeFam:
Gene Tree for RC3H1-IT1 (if available)

No data available for Orthologs for RC3H1-IT1 Gene

Paralogs for RC3H1-IT1 Gene

No data available for Paralogs for RC3H1-IT1 Gene

Variants for RC3H1-IT1 Gene

Relevant External Links for RC3H1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RC3H1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RC3H1-IT1 Gene

Disorders for RC3H1-IT1 Gene

No disorders were found for RC3H1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RC3H1-IT1 Gene

Publications for RC3H1-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for RC3H1-IT1 Gene

Sources for RC3H1-IT1 Gene

Content
Loading form....