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Aliases for RC3H1-IT1 Gene

Subcategory (RNA class) for RC3H1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RC3H1-IT1 Gene

  • RC3H1 Intronic Transcript 1 2 3 5
  • RC3H1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for RC3H1-IT1 Gene

Previous GeneCards Identifiers for RC3H1-IT1 Gene

  • GC00U933582
  • GC01M173979

Summaries for RC3H1-IT1 Gene

GeneCards Summary for RC3H1-IT1 Gene

RC3H1-IT1 (RC3H1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RC3H1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RC3H1-IT1 Gene

Genomics for RC3H1-IT1 Gene

Regulatory Elements for RC3H1-IT1 Gene

Enhancers for RC3H1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H174020 1.4 ENCODE dbSUPER 0.4 -6.1 -6060 3 HDGF FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ANKRD45 ZBTB37 GAS5 RC3H1 RC3H1-IT1
GH01H174017 0.5 Ensembl 0.7 -1.3 -1295 0 ZNF362 PRDM6 ZSCAN5C ZNF384 RNA5SP67 SERPINC1 CENPL DARS2 RC3H1 RC3H1-IT1
GH01H174018 0.5 Ensembl 0.7 -2.0 -1995 0 PKNOX1 ZNF362 FOXA1 SERPINC1 DARS2 RNA5SP67 CENPL RC3H1 RC3H1-IT1
GH01H174005 0.8 ENCODE 0.4 +11.0 10989 0 PKNOX1 TBL1XR1 BACH1 EBF1 BATF RELA ZNF316 EED SCRT2 ZSCAN29 RC3H1-IT1 GC01M174024 RNA5SP68
GH01H174019 0.4 Ensembl 0.7 -2.6 -2595 0 FOXA2 ZSCAN16 SERPINC1 RABGAP1L RNA5SP67 CENPL DARS2 RC3H1 RC3H1-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RC3H1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RC3H1-IT1 Gene

Chromosome:
1
Start:
174,009,267 bp from pter
End:
174,016,206 bp from pter
Size:
6,940 bases
Orientation:
Minus strand

Genomic View for RC3H1-IT1 Gene

Genes around RC3H1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RC3H1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RC3H1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for RC3H1-IT1 Gene

Proteins for RC3H1-IT1 Gene

Post-translational modifications for RC3H1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RC3H1-IT1 Gene

Domains & Families for RC3H1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RC3H1-IT1 Gene

Function for RC3H1-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RC3H1-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RC3H1-IT1 Gene

Localization for RC3H1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RC3H1-IT1 Gene

Pathways & Interactions for RC3H1-IT1 Gene

SuperPathways for RC3H1-IT1 Gene

No Data Available

Interacting Proteins for RC3H1-IT1 Gene

Gene Ontology (GO) - Biological Process for RC3H1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RC3H1-IT1 Gene

Drugs & Compounds for RC3H1-IT1 Gene

No Compound Related Data Available

Transcripts for RC3H1-IT1 Gene

mRNA/cDNA for RC3H1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RC3H1-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RC3H1-IT1 Gene

No ASD Table

Relevant External Links for RC3H1-IT1 Gene

GeneLoc Exon Structure for
RC3H1-IT1
ECgene alternative splicing isoforms for
RC3H1-IT1

Expression for RC3H1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RC3H1-IT1 Gene

genes like me logo Genes that share expression patterns with RC3H1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RC3H1-IT1 Gene

Orthologs for RC3H1-IT1 Gene

Evolution for RC3H1-IT1 Gene

ENSEMBL:
Gene Tree for RC3H1-IT1 (if available)
TreeFam:
Gene Tree for RC3H1-IT1 (if available)

No data available for Orthologs for RC3H1-IT1 Gene

Paralogs for RC3H1-IT1 Gene

No data available for Paralogs for RC3H1-IT1 Gene

Variants for RC3H1-IT1 Gene

Relevant External Links for RC3H1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RC3H1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RC3H1-IT1 Gene

Disorders for RC3H1-IT1 Gene

No disorders were found for RC3H1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RC3H1-IT1 Gene

Publications for RC3H1-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 60

Products for RC3H1-IT1 Gene

Sources for RC3H1-IT1 Gene

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