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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

RBPMS2 Gene

protein-coding GIFtS: 44
GCID: GC15M065032

RNA binding protein with multiple splicing 2

Explore 1 disease affiliated with
RBPMS2 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
RNA Binding Protein With Multiple Splicing 2¹ ²
RNA-Binding Protein With Multiple Splicing 2²

External Ids:	HGNC: 19098¹	Entrez Gene: 348093²	Ensembl: ENSG00000166831⁷	UniProtKB: Q6ZRY4³

Export aliases for RBPMS2 gene to outside databases

Previous GC identifers: GC15M062612 GC15U900325 GC15M062747 GC15M062819 GC15M041857

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000015.9 NC_018926.1 NT_010194.17

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the RBPMS2 gene promoter:
MIF-1 Nkx2-5 GATA-2 HNF-1A PPAR-gamma1 HNF-1 SEF-1 (1) PPAR-gamma2 LyF-1 Ik-1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: RBPMS2 promoter sequence

Search SABiosciences Chromatin IP Primers for RBPMS2

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RBPMS2

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q22.31 Ensembl cytogenetic band: 15q22.31 HGNC cytogenetic band: 15q22.3

RBPMS2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RBPMS2 gene location

GeneLoc information about chromosome 15 GeneLoc Exon Structure

GeneLoc location for GC15M065032: view genomic region (about GC identifiers)

Start:	65,032,091 bp from pter	End:	65,067,786 bp from pter
Size:	35,696 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RBPS2_HUMAN, Q6ZRY4 (See protein sequence)

Recommended Name: RNA-binding protein with multiple splicing 2

Size: 209 amino acids; 22497 Da

Explore the universe of human proteins at neXtProt for RBPMS2: NX_Q6ZRY4

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q6ZRY4

RBPMS2 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_919248.1

ENSEMBL proteins:

ENSP00000456720 ENSP00000300069

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

RBPMS2 for domains About GeneDecksing

2 InterPro domains/families:

IPR012677 Nucleotide-bd_a/b_plait

IPR000504 RRM_dom

Graphical View of Domain Structure for InterPro Entry Q6ZRY4

ProtoNet protein and cluster: Q6ZRY4

1 Blocks protein family: IPB000504 RNA-binding region RNP-1 (RNA recognition motif)

UniProtKB/Swiss-Prot: RBPS2_HUMAN, Q6ZRY4

Similarity: Contains 1 RRM (RNA recognition motif) domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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In Situ Assay
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Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000166	nucleotide binding	IEA	--
GO:0003676	nucleic acid binding	IEA	--

RBPMS2 for ontologies About GeneDecksing

1 GenomeRNAi human phenotype for RBPMS2:

Decreased viability with pacli

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for RBPMS2

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for RBPMS2
Search CenterWatch for drugs/clinical trials and news about RBPMS2 / RBPS2

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for RBPMS2 gene:

NM_194272.1

Unigene Cluster for RBPMS2:

RNA binding protein with multiple splicing 2

Hs.436518 [show with all ESTs]

Unigene Representative Sequence: AY369207

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000560606 ENST00000300069(uc002anq.3)

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Additional cDNA sequence:

AK124123.1 AK127873.1 AY369207.1 BC131612.1 BC148208.1

4 DOTS entries:

DT.442905 DT.97771266 DT.121026265 DT.75193898

24/33 AceView cDNA sequences (see all 33):

AW271941 BU508435 BM677360 AK124123 AI373117 BQ773376 AI949228 AY369207

CD360030 BX104994 AA622730 AK127873 AI309137 AI274305 BE348466 BU173634

BE968842 BQ447479 AI745402 AA216168 BM721780 BQ772600 AI139750 AI654442

GeneLoc Exon Structure

5/7 Alternative Splicing Database (ASD) splice patterns (SP) for RBPMS2 (see all 7) About this scheme

ExUns:	1a	·	1b	·	1c	^	2	^	3	^	4	^	5a	·	5b	^	6	^	7	^	8a	·	8b	·	8c	^	9a	·	9b	·	9c	^	10a	·	10b	·	10c
SP1:													-																		-
SP2:							-		-				-																		-
SP3:							-		-				-								-
SP4:							-		-				-
SP5:																															-

ECgene alternative splicing isoforms for RBPMS2

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

RBPMS2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AAGAAGAAAA

About this image

RBPMS2 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

5 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Brain

Brain

Eye

Diencephalic Ventricular Zone

Neural Tube

Telencephalon

Neural Tube

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 4 LifeMap Cells

Name

Category

PureStem™ myogenic progenitor Z11 (Embryonic Progenitor Cell)

Heart, Myocardium, Smooth Muscle

PureStem™ epithelial progenitor E164 (Embryonic Progenitor Cell)

Intermediate Mesoderm, Kidney

PureStem™ progenitor E44 (Embryonic Progenitor Cell)

Sox17-GFP genetically modified stem cells (Embryonic Stem Cell)

Early Embryo, Inner Cell Mass

See RBPMS2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RBPMS2

SOURCE GeneReport for Unigene cluster: Hs.436518

SABiosciences Custom PCR Arrays for RBPMS2

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for RBPMS2 gene from 8/26 species (see all 26) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	RBPMS2¹	RNA binding protein with multiple splicing 2	81.67(n) 89(a)		395678 NM_204869.1 NP_990200.1
lizard (Anolis carolinensis)	Reptilia	RBPMS2⁶	--	94(a)	1 ↔ 1	GL343479.1(662960-668600)
African clawed frog (Xenopus laevis)	Amphibia	Xl.6280²	Xenopus laevis transcribed sequence with moderate similarity more	78.47(n)		BU912066.1
zebrafish (Danio rerio)	Actinopterygii	zgc55559²	hypothetical protein MGC55559	76.68(n)		393229 BC048876.1
fruit fly (Drosophila melanogaster)	Insecta	cpo¹	couch potato	54.85(n) 54.43(a)		45840 NM_169782.2 NP_732283.4
worm (Caenorhabditis elegans)	Secernentea	mec-8⁶	MEChanosensory abnormality family member (mec-8)	23(a)	1 → many	I(9441007-9450724)
thale cress (Arabidopsis thaliana)	eudicotyledons	AT2G42240⁶ AT3G13700⁶ (see all 3)	RNA recognition motif-containing protein (see all 3)	17(a) 16(a) (see all 3)	many ↔ many many ↔ many (see all 3)	2(17596817-17599604) 3(4490628-4493737)
rice (Oryza sativa)	Liliopsida	-- -- (see all 3)	proline rich protein 3, putative, expressed RNA recognition motif containing protein, putative... (see all 3)	18(a) 15(a) (see all 3)	possible ortholog many ↔ many (see all 3)	8(9122564-9126613) 6(2634899-2640380)

ENSEMBL Gene Tree for RBPMS2 (if available)
TreeFam Gene Tree for RBPMS2 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for RBPMS2 gene

RBPMS²

1 SIMAP similar gene for RBPMS2 using alignment to 2 protein entries: RBPS2_HUMAN (see all proteins):

RBPMS

RBPMS2 for paralogs About GeneDecksing

2 Pseudogenes.org Pseudogenes for RBPMS2
PGOHUM00000239037 PGOHUM00000243247

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 15 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs12101631^1,2	H	--	41882586(+)	`AGGTAG/AAAGCT`	1	--	us2k¹		4		NS EA	418
rs140540133^1,2	C,	--	65031732(+)	`GTAAA-/GTGGTT`	1	--	int¹		0	--	--	--	--
rs145552224^1,2		--	65031747(+)	`CGAGTA/GTATCA`	1	--	int¹		0	--	--	--	--
rs148871121^1,2		--	65031800(+)	`GTGTAA/GGGAGT`	1	--	int¹		0	--	--	--	--
rs113998066^1,2	F,	--	65031825(+)	`ACAGCC/TTGGAA`	1	--	int¹		1		WA	118
rs143569838^1,2		--	65031828(+)	`GCCTGC/GAAACT`	1	--	int¹		0	--	--	--	--
rs138197014^1,2		--	65031860(+)	`CCAGGC/GCCTTA`	1	--	int¹		0	--	--	--	--
rs182039093^1,2		--	65031935(+)	`GTGAGC/TTCCAA`	1	--	int¹		0	--	--	--	--
rs75287472^1,2		--	65032012(+)	`TCCCCC/TGACTC`	1	--	int¹		2		CSA WA	120
rs184268731^1,2		--	65032013(+)	`CCCCCA/GACTCC`	1	--	int¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for RBPMS2 (65032091 - 65067786 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for RBPMS2: --

SABiosciences Cancer Mutation PCR Assays

QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RBPMS2

DNA2.0 Custom Variant and Variant Library Synthesis for RBPMS2

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

RBPMS2 for disorders About GeneDecksing

1 disease for RBPMS2: About MalaCards

neuronitis

Export disorders for RBPMS2 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for RBPMS2 gene integrated from 9 sources:
(articles sorted by number of sources associating them with RBPMS2)

Utopia: connect your pdf to the dynamic
world of online information

Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
The RNA-binding protein RBPMS2 regulates development o f gastrointestinal smooth muscle. (PubMed id 22683258)¹ Notarnicola C....De Santa Barbara P. (2012)
A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)¹ Wagner S.A....Choudhary C. (2011)
A yeast two-hybrid system reconstituting substrate recognition of the von Hippel-Lindau tumor suppressor protein. (PubMed id 17986458)¹ Bex C....Buchberger A. (2007)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)
Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )² Aoki H.... Hino O. (2000)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 348093	HGNC: 19098	AceView: RBPMS2	Ensembl:ENSG00000166831	euGenes: HUgn348093
ECgene: RBPMS2	H-InvDB: RBPMS2

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for RBPMS2	Pharmacogenomics, SNPs, Pathways

Intellectual Property for RBPMS2 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for RBPMS2 gene:
Search GeneIP for patents involving RBPMS2

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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About This Section


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	OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RBPMS2		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RBPMS2
	Browse OriGene GFP tagged cDNA clones in CMV expression vector		Browse OriGene MicroRNA Expression Plasmids
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	OriGene Purified Protein for RBPMS2		OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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	QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RBPMS2
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	QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RBPMS2
	QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RBPMS2
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	GenScript Custom Purified and Recombinant Proteins Services for RBPMS2		GenScript cDNA clones with any tag delivered in your preferred vector for RBPMS2
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	Gene Synthesis: Any Gene in Any Vector		Vector-based siRNA and miRNA, Ready for Transfection
	Gene Mutant Library, Variants up to 10^11		Plasmid Preparation
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Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RBPMS2

	SwitchGear 3'UTR luciferase reporter plasmids for RBPMS2
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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RBPMS2

GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

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Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes RBPMS2 gene at Home site.

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RBPMS2 Gene

RNA binding protein with multiple splicing 2

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RBPMS2 Gene

RNA binding protein with multiple splicing 2

Aliasesfor RBPMS2 gene

Summariesfor RBPMS2 gene

Genomic Viewsfor RBPMS2 gene

Proteinsfor RBPMS2 gene

Protein Domains /Familiesfor RBPMS2 gene

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