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Aliases for RBPMS-AS1 Gene

Subcategory (RNA class) for RBPMS-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for RBPMS-AS1 Gene

  • RBPMS Antisense RNA 1 2 3 5
  • CTD-3107M8.4 3

External Ids for RBPMS-AS1 Gene

Previous GeneCards Identifiers for RBPMS-AS1 Gene

  • GC08M030239

Summaries for RBPMS-AS1 Gene

GeneCards Summary for RBPMS-AS1 Gene

RBPMS-AS1 (RBPMS Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RBPMS-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBPMS-AS1 Gene

Genomics for RBPMS-AS1 Gene

Regulatory Elements for RBPMS-AS1 Gene

Enhancers for RBPMS-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H030419 1.8 FANTOM5 Ensembl ENCODE dbSUPER 17.4 -36.6 -36647 4.8 HDAC1 ATF1 FOXA2 TBL1XR1 ARNT BMI1 RAD21 TCF12 GATA2 SCRT2 RBPMS-AS1 RBPMS GTF2E2 MBOAT4 PIR31328
GH08H030383 1.1 ENCODE dbSUPER 27 +2.9 2922 0.2 PKNOX1 FOXA2 DMAP1 RAD21 RFX5 ZSCAN5C ZNF143 MIXL1 DEK ZNF654 RBPMS-AS1 RBPMS PIR39270
GH08H030410 1.4 Ensembl ENCODE dbSUPER 19.1 -29.2 -29175 7.7 ELF3 FOXA2 ZSCAN9 RAD21 RARA YY1 FOS RCOR1 CREM MIXL1 RBPMS-AS1 RBPMS PPP2CB PPIAP84 PIR31328
GH08H030545 1.5 Ensembl ENCODE dbSUPER 17.1 -164.3 -164302 8.2 PKNOX1 FOXA2 ATF1 ZFP64 ARID4B DMAP1 YY1 ATF7 SP5 MXD4 RBPMS-AS1 RBPMS ENSG00000253112 RNU5A-3P GTF2E2 SMIM18 PIR38894 PIR40668
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RBPMS-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RBPMS-AS1 Gene

Genomic Locations for RBPMS-AS1 Gene
3,283 bases
Minus strand

Genomic View for RBPMS-AS1 Gene

Genes around RBPMS-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBPMS-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBPMS-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBPMS-AS1 Gene

Proteins for RBPMS-AS1 Gene

Post-translational modifications for RBPMS-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBPMS-AS1 Gene

Domains & Families for RBPMS-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBPMS-AS1 Gene

Function for RBPMS-AS1 Gene

Phenotypes From GWAS Catalog for RBPMS-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBPMS-AS1 Gene

Localization for RBPMS-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RBPMS-AS1 Gene

Pathways & Interactions for RBPMS-AS1 Gene

SuperPathways for RBPMS-AS1 Gene

No Data Available

Interacting Proteins for RBPMS-AS1 Gene

Gene Ontology (GO) - Biological Process for RBPMS-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for RBPMS-AS1 Gene

Drugs & Compounds for RBPMS-AS1 Gene

No Compound Related Data Available

Transcripts for RBPMS-AS1 Gene

mRNA/cDNA for RBPMS-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RBPMS-AS1 Gene

No ASD Table

Relevant External Links for RBPMS-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RBPMS-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RBPMS-AS1 Gene

genes like me logo Genes that share expression patterns with RBPMS-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RBPMS-AS1 Gene

Orthologs for RBPMS-AS1 Gene

Evolution for RBPMS-AS1 Gene

Gene Tree for RBPMS-AS1 (if available)
Gene Tree for RBPMS-AS1 (if available)

No data available for Orthologs for RBPMS-AS1 Gene

Paralogs for RBPMS-AS1 Gene

No data available for Paralogs for RBPMS-AS1 Gene

Variants for RBPMS-AS1 Gene

Sequence variations from dbSNP and Humsavar for RBPMS-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000315799 -- 30,385,572(+) GTTCT(C/T)GTTAA intron-variant, upstream-variant-2KB
rs1000594900 -- 30,387,041(+) AATAA(G/T)CGCTG intron-variant, upstream-variant-2KB
rs1000825756 -- 30,387,194(+) GGACA(C/T)GTAGG intron-variant, upstream-variant-2KB
rs1001270282 -- 30,384,081(+) CTGGC(A/T)CGGGA intron-variant, upstream-variant-2KB
rs1001322586 -- 30,384,297(+) CAGCC(A/G)CTGAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RBPMS-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv509260 CNV insertion 20534489
nsv526509 CNV gain 19592680

Relevant External Links for RBPMS-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBPMS-AS1 Gene

Disorders for RBPMS-AS1 Gene

Relevant External Links for RBPMS-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for RBPMS-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBPMS-AS1 Gene

Publications for RBPMS-AS1 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 60

Products for RBPMS-AS1 Gene

Sources for RBPMS-AS1 Gene

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