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Aliases for RBPMS-AS1 Gene

Subcategory (RNA class) for RBPMS-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RBPMS-AS1 Gene

  • RBPMS Antisense RNA 1 2 3 5
  • CTD-3107M8.4 3

External Ids for RBPMS-AS1 Gene

Previous GeneCards Identifiers for RBPMS-AS1 Gene

  • GC08M030239

Summaries for RBPMS-AS1 Gene

GeneCards Summary for RBPMS-AS1 Gene

RBPMS-AS1 (RBPMS Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBPMS-AS1 Gene

Genomics for RBPMS-AS1 Gene

Regulatory Elements for RBPMS-AS1 Gene

Enhancers for RBPMS-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F030743 1.1 ENCODE 32 -358.7 -358741 2.5 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 SP3 MXD4 WRN RBPMS-AS1 GTF2E2 PPP2CB RNU5A-3P GSR UBXN8 GC08M030742 LOC105379355
GH08F031033 0.8 FANTOM5 ENCODE 32 -649.0 -649036 2.7 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 RBPMS-AS1 WRN KCTD9P6 UBXN8 PURG SUMO2P16
GH08F030383 0.2 ENCODE 27 +2.9 2922 0.2 PKNOX1 DMAP1 RAD21 RFX5 MIXL1 ZNF654 CEBPB MXD4 REST TGIF2 RBPMS-AS1 RBPMS PIR39270
GH08F030382 0.7 ENCODE 26.3 +0.1 66 5.4 ARID4B GLI4 DMAP1 ZNF48 YY1 ZNF121 FOS KLF7 ZNF263 SP3 RBPMS-AS1 UBXN8 SARAF RBPMS
GH08F030155 1 ENCODE 21.8 +228.5 228536 3.5 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 WRN RBPMS-AS1 LEPROTL1 SARAF DUSP4 HSPA8P11 DCTN6 MBOAT4
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RBPMS-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RBPMS-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001440109 -399 4400 ARID4B GLI4 ZNF48 YY1 ZNF121 FOS KLF7 ZNF263 SP3 ZNF623

Genomic Location for RBPMS-AS1 Gene

Chromosome:
8
Start:
30,382,119 bp from pter
End:
30,385,401 bp from pter
Size:
3,283 bases
Orientation:
Minus strand

Genomic View for RBPMS-AS1 Gene

Genes around RBPMS-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBPMS-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBPMS-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBPMS-AS1 Gene

Proteins for RBPMS-AS1 Gene

Post-translational modifications for RBPMS-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBPMS-AS1 Gene

Domains & Families for RBPMS-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBPMS-AS1 Gene

Function for RBPMS-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBPMS-AS1 Gene

Localization for RBPMS-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RBPMS-AS1 Gene

Pathways & Interactions for RBPMS-AS1 Gene

SuperPathways for RBPMS-AS1 Gene

No Data Available

Interacting Proteins for RBPMS-AS1 Gene

Gene Ontology (GO) - Biological Process for RBPMS-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RBPMS-AS1 Gene

Transcripts for RBPMS-AS1 Gene

mRNA/cDNA for RBPMS-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RBPMS-AS1 Gene

No ASD Table

Relevant External Links for RBPMS-AS1 Gene

GeneLoc Exon Structure for
RBPMS-AS1
ECgene alternative splicing isoforms for
RBPMS-AS1

Expression for RBPMS-AS1 Gene

mRNA expression in normal human tissues for RBPMS-AS1 Gene

genes like me logo Genes that share expression patterns with RBPMS-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RBPMS-AS1 Gene

Orthologs for RBPMS-AS1 Gene

Evolution for RBPMS-AS1 Gene

ENSEMBL:
Gene Tree for RBPMS-AS1 (if available)
TreeFam:
Gene Tree for RBPMS-AS1 (if available)

No data available for Orthologs for RBPMS-AS1 Gene

Paralogs for RBPMS-AS1 Gene

No data available for Paralogs for RBPMS-AS1 Gene

Variants for RBPMS-AS1 Gene

Sequence variations from dbSNP and Humsavar for RBPMS-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10658617 -- 30,382,575(+) TTTCA(-/AT)AGAGT nc-transcript-variant, upstream-variant-2KB
rs113142693 -- 30,384,560(+) GCGCG(C/T)ACTCA intron-variant, nc-transcript-variant, utr-variant-5-prime
rs113198678 -- 30,384,102(+) TAGGG(C/T)CAGGG intron-variant, upstream-variant-2KB
rs114846565 -- 30,383,535(+) CAACC(C/T)ATAAT intron-variant, upstream-variant-2KB
rs115594893 -- 30,382,419(+) TTGCT(C/T)GGGAA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RBPMS-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv509260 CNV insertion 20534489
nsv526509 CNV gain 19592680

Relevant External Links for RBPMS-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBPMS-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBPMS-AS1 Gene

Disorders for RBPMS-AS1 Gene

Relevant External Links for RBPMS-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RBPMS-AS1

No disorders were found for RBPMS-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBPMS-AS1 Gene

Publications for RBPMS-AS1 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64

Products for RBPMS-AS1 Gene

Sources for RBPMS-AS1 Gene

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