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Aliases for RBPMS-AS1 Gene

Subcategory (RNA class) for RBPMS-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RBPMS-AS1 Gene

  • RBPMS Antisense RNA 1 2 3 5
  • CTD-3107M8.4 3

External Ids for RBPMS-AS1 Gene

Previous GeneCards Identifiers for RBPMS-AS1 Gene

  • GC08M030239

Summaries for RBPMS-AS1 Gene

GeneCards Summary for RBPMS-AS1 Gene

RBPMS-AS1 (RBPMS Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBPMS-AS1 Gene

Genomics for RBPMS-AS1 Gene

Regulatory Elements for RBPMS-AS1 Gene

Enhancers for RBPMS-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G030382 1.3 ENCODE dbSUPER 26.3 +0.1 66 5.4 ARID4B SIN3A DMAP1 GLI4 ZNF48 YY1 ZNF121 GATA2 KLF7 FOS RBPMS-AS1 UBXN8 SARAF RBPMS
GH08G030419 1.9 FANTOM5 Ensembl ENCODE dbSUPER 17.4 -36.6 -36647 4.8 ATF1 FOXA2 ARNT ZFP64 FEZF1 ZNF48 TCF12 GATA2 FOS REST RBPMS-AS1 RBPMS GTF2E2 MBOAT4 PIR31328
GH08G030383 1.1 ENCODE dbSUPER 27 +2.9 2922 0.2 PKNOX1 DMAP1 RAD21 RFX5 ZSCAN5C ZNF143 MIXL1 DEK ZNF654 MXD4 RBPMS-AS1 RBPMS PIR39270
GH08G030410 1.4 Ensembl ENCODE dbSUPER 19.1 -29.2 -29175 7.7 ELF3 FOXA2 ZSCAN9 RAD21 RARA YY1 FOS CREM MIXL1 THAP11 RBPMS-AS1 RBPMS PPP2CB ENSG00000254152 PIR31328
GH08G030545 1.4 Ensembl ENCODE dbSUPER 17.1 -164.3 -164302 8.2 PKNOX1 ATF1 ZFP64 ARID4B DMAP1 ZNF48 YY1 SP5 MXD4 REST RBPMS-AS1 RBPMS ENSG00000253112 RNU5A-3P GTF2E2 SMIM18 PIR40668 PIR38894
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RBPMS-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RBPMS-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000223068 -299 3801 ARID4B GLI4 ZNF48 YY1 ZNF121 GATA2 KLF7 FOS ZNF263 SP3

Genomic Location for RBPMS-AS1 Gene

Chromosome:
8
Start:
30,382,119 bp from pter
End:
30,385,401 bp from pter
Size:
3,283 bases
Orientation:
Minus strand

Genomic View for RBPMS-AS1 Gene

Genes around RBPMS-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBPMS-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBPMS-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBPMS-AS1 Gene

Proteins for RBPMS-AS1 Gene

Post-translational modifications for RBPMS-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBPMS-AS1 Gene

Domains & Families for RBPMS-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBPMS-AS1 Gene

Function for RBPMS-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBPMS-AS1 Gene

Localization for RBPMS-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RBPMS-AS1 Gene

Pathways & Interactions for RBPMS-AS1 Gene

SuperPathways for RBPMS-AS1 Gene

No Data Available

Interacting Proteins for RBPMS-AS1 Gene

Gene Ontology (GO) - Biological Process for RBPMS-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RBPMS-AS1 Gene

Drugs & Compounds for RBPMS-AS1 Gene

No Compound Related Data Available

Transcripts for RBPMS-AS1 Gene

mRNA/cDNA for RBPMS-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RBPMS-AS1 Gene

No ASD Table

Relevant External Links for RBPMS-AS1 Gene

GeneLoc Exon Structure for
RBPMS-AS1
ECgene alternative splicing isoforms for
RBPMS-AS1

Expression for RBPMS-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RBPMS-AS1 Gene

genes like me logo Genes that share expression patterns with RBPMS-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RBPMS-AS1 Gene

Orthologs for RBPMS-AS1 Gene

Evolution for RBPMS-AS1 Gene

ENSEMBL:
Gene Tree for RBPMS-AS1 (if available)
TreeFam:
Gene Tree for RBPMS-AS1 (if available)

No data available for Orthologs for RBPMS-AS1 Gene

Paralogs for RBPMS-AS1 Gene

No data available for Paralogs for RBPMS-AS1 Gene

Variants for RBPMS-AS1 Gene

Sequence variations from dbSNP and Humsavar for RBPMS-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000315799 -- 30,385,572(+) GTTCT(C/T)GTTAA intron-variant, upstream-variant-2KB
rs1000594900 -- 30,387,041(+) AATAA(G/T)CGCTG intron-variant, upstream-variant-2KB
rs1000825756 -- 30,387,194(+) GGACA(C/T)GTAGG intron-variant, upstream-variant-2KB
rs1001270282 -- 30,384,081(+) CTGGC(A/T)CGGGA intron-variant, upstream-variant-2KB
rs1001322586 -- 30,384,297(+) CAGCC(A/G)CTGAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RBPMS-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv509260 CNV insertion 20534489
nsv526509 CNV gain 19592680

Relevant External Links for RBPMS-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBPMS-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBPMS-AS1 Gene

Disorders for RBPMS-AS1 Gene

Relevant External Links for RBPMS-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RBPMS-AS1

No disorders were found for RBPMS-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBPMS-AS1 Gene

Publications for RBPMS-AS1 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64

Products for RBPMS-AS1 Gene

Sources for RBPMS-AS1 Gene

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