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Aliases & Descriptions for RBP4
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| OTTHUMP00000020114 2 | | OTTHUMP00000020116 2 | | PRBP 3 | | RBP 3 |
| | | Descriptions |
|---|
| Plasma retinol-binding protein 3 | | retinol binding protein 4, plasma 2 | | retinol-binding protein 4, interstitial 2 | | retinol-binding protein 4, plasma 1, 2 |
|
| | Search outside databases for aliases for RBP4 genePrevious GC identifers: GC10M094244 GC10M094585 GC10M095482 GC10M095016 |
Summaries for RBP4(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for RBP4: This protein belongs to the lipocalin family and is the specific carrier for retinol (vitamin A alcohol) in the blood. It delivers retinol from the liver stores to the peripheral tissues. In plasma, the RBP-retinol complex interacts with transthyretin which prevents its loss by filtration through the kidney glomeruli. A deficiency of vitamin A blocks secretion of the binding protein posttranslationally and results in defective delivery and supply to the epidermal cells. [provided by RefSeq] UniProtKB/Swiss-Prot: RET4_HUMAN, P02753Function: Delivers retinol from the liver stores to the peripheral tissues. In plasma, the RBP-retinol complex interacts with transthyretin, this prevents its loss by filtration through the kidney glomeruliGene Wiki entry for RBP4 (Retinol_binding_protein_4) |
Genomic Location for RBP4
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the RBP4 gene 
Entrez Gene cytogenetic band: 10q23-q24 Ensembl cytogenetic band: 10q23.33 HGNC cytogenetic band: 10q23-q24RBP4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure GeneLoc location for GC10M095341:
(about GC identifiers)
Start:
|
95,341,434 bp from pter |
End:
|
95,351,491 bp from pter |
Size:
|
10,058 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000010.9 NT_030059.12
| Proteins for RBP4
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: RET4_HUMAN, P02753 (See
protein sequence)Recommended Name: Retinol-binding protein 4 precursor Size: 201 amino acids; 23010 Da
Subcellular location: Secreted
Mass spectrometry: Mass=21063.46; Mass_error=1.88; Method=Electrospray; Range=17-199; Source=PubMed:7666002;
Mass spectrometry: Mass=20534; Method=MALDI; Range=19-197; Source=PubMed:12237133;
Mass spectrometry: Mass=20162; Method=MALDI; Range=19-194; Source=PubMed:12237133;
PDB structures from and Proteopedia :1BRP (3D)
 1BRQ (3D)
 1JYD (3D)
 1JYJ (3D)
 1QAB (3D)
 1RBP (3D)
 1RLB (3D)
 3BSZ (3D)
 3FMZ (3D)
 
Secondary accessions: O43478 O43479 Q5VY24 Q8WWA3 Q9P178REFSEQ proteins: NP_006735.2
ENSEMBL proteins: ENSP00000360522 ENSP00000360519 ENSP00000360524 ENSP00000360518
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: RBP4 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for RBP4: Assays for RBP4: | Protein
Domains/ Families for RBP4(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P02753
ProtoNet protein and cluster: P02753 2 Blocks protein families: IPB002345 Lipocalin signature IPB002449 Retinol binding protein signature
UniProtKB/Swiss-Prot: RET4_HUMAN, P02753Similarity: Belongs to the calycin superfamily. Lipocalin family | Gene Function for RBP4
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006744
Applied Biosystems Silencer® siRNAs for RBP4
Sigma-Aldrich siRNA and siRNA Panels for RBP4  Sigma-Aldrich shRNA for RBP4  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006744                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006744                                  untagged cDNA clone in CMV expression vector: NM_006744 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_006744
UniProtKB/Swiss-Prot: RET4_HUMAN, P02753Function: Delivers retinol from the liver stores to the peripheral tissues. In plasma, the RBP-retinol complex interacts with transthyretin, this prevents its loss by filtration through the kidney glomeruliGenatlas biochemistry entry for RBP4:retinol binding protein 4,serum (lipocalin family,Kernel group),monomer,binding to transthyretin7 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Rbp4):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for RBP4
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for RBP4 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for RBP4 
5/7 Interacting proteins for RBP4 (ENSP000003605223) via UniProtKB, MINT, and/or STRING (see all 7
)About this table
5/23 Gene Ontology (GO) biological process terms (links to tree view) (see all 23
): About this table
|
Drugs & Compounds for RBP4(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for RBP4 10/43 Novoseek chemical compound relationships for RBP4 gene (see all 43
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| n-4-methoxyphenylretinamide |
63.29 |
2 |
7586162 (1), 2140925 (1) |
| retinyl ester |
55.91 |
2 |
8290933 (2) |
| purpurin |
51.85 |
4 |
1601873 (2), 1915658 (1) |
| glucose |
48.48 |
165 |
18430770 (5), 19190263 (5), 18466349 (4), 17656599 (4) (see all 54) |
| cadmium |
39.52 |
32 |
9614399 (4), 7719661 (3), 12849688 (3), 12733083 (3) (see all 11) |
| 1,3-dichloropropene |
35.86 |
1 |
8243412 (1) |
| cholesterol |
33.39 |
35 |
8669421 (4), 18782570 (2), 16843945 (2), 17890490 (2) (see all 23) |
| lipid |
30.70 |
26 |
17292720 (2), 18199128 (2), 17986278 (1), 18430770 (1) (see all 16) |
| zinc |
29.76 |
42 |
9881002 (5), 11240140 (4), 10702174 (3), 11926045 (2) (see all 17) |
| vitamin-e |
29.75 |
9 |
8839511 (2), 8316755 (1), 9554560 (1), 10648269 (1) (see all 6) |
About this table
|
Transcripts for RBP4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006744
Sigma-Aldrich siRNA and siRNA Panels for RBP4  Sigma-Aldrich shRNA for RBP4  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_006744 REFSEQ mRNAs for RBP4 gene: NM_006744.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_006744               OriGene GFP tagged cDNA clone in CMV expression vector: NM_006744                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006744                                  untagged cDNA clone in CMV expression vector: NM_006744  Additional cDNA sequence: BC020633.1 X00129.1 11 DOTS entries: DT.449609 DT.101987968 DT.95269390 DT.121212756 DT.108214 DT.95269391 DT.100740972 DT.95269382 DT.121212750 DT.91783506 DT.95269381 24/276 AceView cDNA sequences (see all 276
):AA742458 H28527 CA771937 BQ269598 AV648544 H25489 CA867042 H26422 BQ271126 BQ271418 AV718975 BQ787983 H21451 AV652752 BM090826 AV662271 AI132990 CA776212 AI111174 BU077944 CA772098 R54700 BX496564 AV683638
highest scoring ESTs for RBP4:X00129 AV648043 AV648119 AV648272 AV648275 AV648504 AV648515 AV648525 AV648544 AV649661 Unigene Cluster for RBP4: Retinol binding protein 4, plasma Hs.50223 [show with all ESTs]Unigene Representative Sequence: BQ064708
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for RBP4
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | ^ | 5a | · | 5b | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP3: | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for RBP4
4 Ensembl transcripts including schematic representations: ENST00000371467
ENST00000371464
ENST00000371469
ENST00000371463
|
Expression for RBP4
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| RBP4 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for RBP4
1 / 2 / 3 3 probe-sets matching RBP4 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTGGGCACCT
SOURCE GeneReport for Unigene cluster: Hs.50223
Expression variation in blood from EXPOLDB for RBP4 |
Orthologs for RBP4
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for RBP4 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for RBP4
ENSEMBL Gene Tree for RBP4 | Paralogs for RBP4(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for RBP4(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for RBP4 (up to first 250kb)
|
Disorders & Mutations for RBP4
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 180250 UniProtKB/Swiss-Prot: RET4_HUMAN, P02753
Defects in RBP4 are a cause of retinol-binding protein deficiency [MIM:180250]. This condition causes night vision problems. It produces a typical "fundus xerophthalmicus," featuring a progressed atrophy of the retinal pigment epithelium A deficiency of vitamin A blocks secretion of the binding protein post-translationally and results in defective delivery and supply of vitamin to the epidermal cells (a condition associated with a dermatosis)10/76 Novoseek disease relationships for RBP4 gene (see all 76
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| vitamin a deficiency |
83.29 |
29 |
14749226 (3), 16702331 (2), 1493768 (1), 16208398 (1) (see all 18) |
| insulin resistance |
75.46 |
347 |
18390799 (7), 18588869 (7), 18641048 (5), 18397979 (5) (see all 95) |
| insulin sensitivity |
66.24 |
62 |
18239568 (5), 17405846 (3), 18430770 (3), 17294166 (3) (see all 27) |
| hypervitaminosis a |
65.53 |
1 |
1517032 (1) |
| proximal renal tubular dysfunction |
56.95 |
1 |
8084448 (1) |
| albuminuria |
56.17 |
10 |
12702785 (2), 18973209 (2), 2250610 (1), 9203174 (1) (see all 5) |
| protein-energy malnutrition |
54.14 |
1 |
11470636 (1) |
| proteinuria |
52.40 |
18 |
10620205 (5), 8084448 (2), 8448868 (2), 1379421 (1) (see all 11) |
| obesity |
51.47 |
105 |
17341558 (4), 16034410 (3), 18381580 (3), 17726085 (3) (see all 39) |
| microalbuminuria |
50.08 |
11 |
17568782 (4), 15016173 (2), 18973209 (2), 17875187 (1) (see all 6) |
About this table
Genatlas disease: RBP4 night blindness and progressive atrophy of the retinal pigment epithelium,autosomal recessive,with retinol binding protein 4 deficiency Human Gene Mutation Database: RBP4 Human Genome Epidemiology Navigator: RBP4 (8 documents)
|
Medical News for RBP4(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for RBP4 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/505 PubMed articles for RBP4 gene (see all 505
):- The structure of human retinol-binding protein (RBP) with its carrier protein transthyretin reveals an interaction with the carboxy terminus of RBP. (PubMed id 10052934)1, 3, 4 Naylor H.M. and Newcomer M.E. (1999)
- Characterization of two post-translationally processed forms of human serum retinol-binding protein: altered ratios in chronic renal failure. (PubMed id 7666002)1, 3, 4 Jaconi S.... Siegenthaler G. (1995)
- Comparative urine protein phenotyping using mass spectrometric immunoassay. (PubMed id 12716133)1, 3, 4 Kiernan U.A.... Nelson R.W. (2003)
- The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)3, 4 Deloukas P.... Rogers J. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Comparative phenotypic analyses of human plasma and urinary retinol binding protein using mass spectrometric immunoassay. (PubMed id 12237133)3, 4 Kiernan U.A.... Nelson R.W. (2002)
- Phenotype in retinol deficiency due to a hereditary defect in retinol binding protein synthesis. (PubMed id 9888420)3, 4 Seeliger M.W.... Zrenner E. (1999)
- Biochemical but not clinical vitamin A deficiency results from mutations in the gene for retinol binding protein. (PubMed id 10232633)3, 4 Biesalski H.K.... Zrenner E. (1999)
- Three-dimensional structure and active site of three hydrophobic molecule-binding proteins with significant amino acid sequence similarity. (PubMed id 1623143)3, 4 Monaco H.L. and Zanotti G. (1992)
- Crystallographic refinement of human serum retinol binding protein at 2-A resolution. (PubMed id 2217163)3, 4 Cowan S.W.... Jones T.A. (1990)
|
Search for RBP4
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing RBP4
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing RBP4
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RBP4(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Mutations of the RBP4 gene | http://www.retina-international.com/sci-news/rlbp4mut.htm | | Wikipedia | http://en.wikipedia.org/wiki/Retinol_binding_protein_4 |
|
| | | About This Section
| --
| Services for RBP4(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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